Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:53668788-53676775[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.1e-06 0.00062 22.1 3.0 1 23 43 65 43 65 0.97

2 16 4.6e-06 0.00047 22.5 2.2 1 23 71 93 71 93 0.98

3 16 0.00053 0.054 16.0 4.0 1 23 99 121 99 121 0.98

4 16 0.00017 0.018 17.5 1.7 1 23 127 149 127 149 0.97

5 16 3.8e-06 0.00038 22.7 1.6 1 23 155 177 155 177 0.97

6 16 1.3e-05 0.0014 21.0 3.7 1 23 183 205 183 205 0.97

7 16 0.00017 0.017 17.5 1.5 1 23 211 233 211 233 0.96

8 16 3.5e-05 0.0035 19.7 2.6 1 23 239 261 239 261 0.98

9 16 1.3e-05 0.0013 21.1 0.6 1 23 267 289 267 289 0.98

10 16 1.5e-06 0.00015 24.0 1.3 1 23 295 317 295 317 0.98

11 16 0.00062 0.063 15.8 1.0 1 23 323 345 323 345 0.97

12 16 0.009 0.91 12.1 4.8 1 23 351 373 351 373 0.97

13 16 4.8e-07 4.9e-05 25.5 0.5 1 23 379 401 379 401 0.98

14 16 0.0029 0.29 13.7 1.4 1 19 407 425 407 435 0.94

15 16 0.28 28 7.4 1.3 5 23 445 463 444 463 0.94

16 16 1.3e-05 0.0013 21.1 0.4 1 23 469 491 469 491 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.1e-06	0.00062	22.1	3.0	1	23	43	65	43	65	0.97
2	16	4.6e-06	0.00047	22.5	2.2	1	23	71	93	71	93	0.98
3	16	0.00053	0.054	16.0	4.0	1	23	99	121	99	121	0.98
4	16	0.00017	0.018	17.5	1.7	1	23	127	149	127	149	0.97
5	16	3.8e-06	0.00038	22.7	1.6	1	23	155	177	155	177	0.97
6	16	1.3e-05	0.0014	21.0	3.7	1	23	183	205	183	205	0.97
7	16	0.00017	0.017	17.5	1.5	1	23	211	233	211	233	0.96
8	16	3.5e-05	0.0035	19.7	2.6	1	23	239	261	239	261	0.98
9	16	1.3e-05	0.0013	21.1	0.6	1	23	267	289	267	289	0.98
10	16	1.5e-06	0.00015	24.0	1.3	1	23	295	317	295	317	0.98
11	16	0.00062	0.063	15.8	1.0	1	23	323	345	323	345	0.97
12	16	0.009	0.91	12.1	4.8	1	23	351	373	351	373	0.97
13	16	4.8e-07	4.9e-05	25.5	0.5	1	23	379	401	379	401	0.98
14	16	0.0029	0.29	13.7	1.4	1	19	407	425	407	435	0.94
15	16	0.28	28	7.4	1.3	5	23	445	463	444	463	0.94
16	16	1.3e-05	0.0013	21.1	0.4	1	23	469	491	469	491	0.97

Sequence Information

Coding Sequence: ATGTCAGATATCGTCTACACTGCTAGCTTTGAAAGGGTTGATACGGACAGTAAGCTTTCACCATTACCGGAGCCACAGGCGGAGCTCGAAGATCACACAGATCAACCTTTCAAGCCACTTCGGCTCTTCCACTGCGAAGTTTGTGGCAAAGAATTTCGCAGTAAGTATCAGCTGCAGCGACACGGCACTACTCACACAGCAGAGCACACGTTCCATTGTGAAATATGTGGCAAAGTATACACCCGGCAGAATTCTTTGACCTTGCATAAACGCATTCACGGTAACGAACAGCCGCATAAGTGCAAGGTTTGTGGTGAAGCGTTCCTCCAGAAACATCAGCTACAACGTCACGTTACCACTCACACTGGCGAACGGCCGCACAAATGTGAAATATGTGACAAAGAATTTTTACGTAAGCGAGACCTGCAAAAACATGTTCTCATCCACACGGGCGAGCGGCCCTATAAATGCGAAATATGTGGAAAAACATTCACCCAACGGGTCAATATGACCACACATAAGTTCATACATGATAGCGAAGGGTCGCATAAATGTCAAATATGCGGcaaacaattttttcaaaagcGCAACCTGCAGCGTCATGTTACCATCCATACTGGCGAGCAACCGTATAAATGTATTATTTGTGGCAAAGGATTCACACAGCAATGTAATTTGAAGACACACGGTTTGATTCATTCTAGCGAACGGGCGTACAAATGTGAAATATGTGGCAAAGAATTTCATCTGAAGCATAACCTGCAGCAACACGTTATCATACACACTGGAGAACGGCCGTATAAATGTGAAATATGTGATTTAACGTTCATTCAGCGTAGTAGCTTGTCCACGCATAAATTAATTCACAGTAGAGAACGAATTCATCGGTGCGTGATATGTGGCAAAGAATTCATTCAGAAGTATAACCTGCAGGAACACATTACCACCCACACCGGCGAGCGGCGCTATAATTGTGATATATGTGGTAAAGAATTTCACCAGCGTGGTAGACTGGCTACGCACAAACTCATTCACAATAGTGAACGGTCGCACAAATGTGAGATGTGTGGCAAAGAATTCCTTCAAAACTGCCACCTACAACAGCACGTTATAATACACACTGGTGAACGGCCGTATAAATGTGATATATGTGGCAAAGGATTCACCCAGCGAGGTAgtttgaaaacacacacactCATTCACGGTAGTAAACGGCTATATAAGTGCGACGTTTGTGGCGAAGGATTCCTCCGTAAAAATCACTTGAAGAAACACGGCAGCTTGATCTCACACAAATTAATTCATGAAAGCGAAAGCTTGTATAAATATAAGCTATGTGACAAAACATTGCTTCAGAAGCGATACCTACAACGGCACACTAAGACCCACACTCGCAAACACACGTATCCATGTGAAGTATGTGGCAAAGTATTTACTCGACAGGATTTCTTCGCGTCACACAAACTTTCTCACGGTAGTGAACAGTCGGATGAGGGCGAGGTGTTTGGCGAGGATCAAAAGTATCATCTGGAGAAACAAGATGTTACCCACATCGACACTGTGAAATGTGACGTCAAACCCATTCCTCGCGACTCGCTGGATATCAATCTCGCTTCCCAGTACAACCACTCGGAGGAGCTGTTCAAGGATAGAAAACACGTTGTCCTACAGGATGAAACCTTGGGATGCACTACGTTCCGTCGACTCCGCAACACCCGGGATCTGAGCCCGGAGAAGATAATTCCGTTAAAACATCCGCTTCAAATCGGGGGATTGCTGGAGAAACCTTCGCCCAGCAGTGTAAAACTGATGAACACCGGACCACATACTCCGCTCACCAATCCCGGTTACTCGCGACAAACTGGGGACGGAAATTTCTTCAACTActaa
Protein Sequence: MSDIVYTASFERVDTDSKLSPLPEPQAELEDHTDQPFKPLRLFHCEVCGKEFRSKYQLQRHGTTHTAEHTFHCEICGKVYTRQNSLTLHKRIHGNEQPHKCKVCGEAFLQKHQLQRHVTTHTGERPHKCEICDKEFLRKRDLQKHVLIHTGERPYKCEICGKTFTQRVNMTTHKFIHDSEGSHKCQICGKQFFQKRNLQRHVTIHTGEQPYKCIICGKGFTQQCNLKTHGLIHSSERAYKCEICGKEFHLKHNLQQHVIIHTGERPYKCEICDLTFIQRSSLSTHKLIHSRERIHRCVICGKEFIQKYNLQEHITTHTGERRYNCDICGKEFHQRGRLATHKLIHNSERSHKCEMCGKEFLQNCHLQQHVIIHTGERPYKCDICGKGFTQRGSLKTHTLIHGSKRLYKCDVCGEGFLRKNHLKKHGSLISHKLIHESESLYKYKLCDKTLLQKRYLQRHTKTHTRKHTYPCEVCGKVFTRQDFFASHKLSHGSEQSDEGEVFGEDQKYHLEKQDVTHIDTVKCDVKPIPRDSLDINLASQYNHSEELFKDRKHVVLQDETLGCTTFRRLRNTRDLSPEKIIPLKHPLQIGGLLEKPSPSSVKLMNTGPHTPLTNPGYSRQTGDGNFFNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -