Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:119610447-119624967[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00025 0.025 17.0 3.4 1 23 102 124 102 124 0.98

2 16 6.7e-06 0.00069 21.9 1.1 1 23 130 153 130 153 0.97

3 16 0.0014 0.14 14.7 0.2 1 23 160 183 160 183 0.98

4 16 0.0001 0.01 18.2 0.3 1 23 215 237 215 237 0.97

5 16 0.062 6.3 9.5 4.7 1 23 243 265 243 265 0.95

6 16 7.1e-06 0.00072 21.9 0.4 2 23 354 375 353 375 0.97

7 16 1.6e-05 0.0016 20.7 1.0 1 23 381 403 381 403 0.99

8 16 0.0013 0.13 14.8 2.2 1 23 481 503 481 503 0.98

9 16 1.1e-06 0.00011 24.4 2.8 1 23 509 531 509 531 0.99

10 16 1.1e-05 0.0011 21.3 1.3 1 23 587 609 587 609 0.97

11 16 0.0015 0.15 14.6 2.1 1 22 615 636 615 639 0.89

12 16 1.4e-06 0.00014 24.1 0.7 1 23 695 717 695 717 0.99

13 16 0.0001 0.01 18.2 1.0 1 23 723 745 723 745 0.98

14 16 0.0028 0.29 13.7 3.4 1 23 899 921 899 921 0.98

15 16 2.9e-08 3e-06 29.4 0.7 1 23 927 949 927 949 0.99

16 16 3.2e-05 0.0032 19.8 0.7 2 23 956 978 955 978 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00025	0.025	17.0	3.4	1	23	102	124	102	124	0.98
2	16	6.7e-06	0.00069	21.9	1.1	1	23	130	153	130	153	0.97
3	16	0.0014	0.14	14.7	0.2	1	23	160	183	160	183	0.98
4	16	0.0001	0.01	18.2	0.3	1	23	215	237	215	237	0.97
5	16	0.062	6.3	9.5	4.7	1	23	243	265	243	265	0.95
6	16	7.1e-06	0.00072	21.9	0.4	2	23	354	375	353	375	0.97
7	16	1.6e-05	0.0016	20.7	1.0	1	23	381	403	381	403	0.99
8	16	0.0013	0.13	14.8	2.2	1	23	481	503	481	503	0.98
9	16	1.1e-06	0.00011	24.4	2.8	1	23	509	531	509	531	0.99
10	16	1.1e-05	0.0011	21.3	1.3	1	23	587	609	587	609	0.97
11	16	0.0015	0.15	14.6	2.1	1	22	615	636	615	639	0.89
12	16	1.4e-06	0.00014	24.1	0.7	1	23	695	717	695	717	0.99
13	16	0.0001	0.01	18.2	1.0	1	23	723	745	723	745	0.98
14	16	0.0028	0.29	13.7	3.4	1	23	899	921	899	921	0.98
15	16	2.9e-08	3e-06	29.4	0.7	1	23	927	949	927	949	0.99
16	16	3.2e-05	0.0032	19.8	0.7	2	23	956	978	955	978	0.95

Sequence Information

Coding Sequence: ATGAATGAGATTGAGGTGAAACAGGAAAAAGATGTGGACGTGGACGTGCAGCATCAGGGCGGAACGGCTGCAAGTGATGAAAATTGTGGATCTGATCAGGAAATTGTGGTCGGAATCGATGAGGATCATATAAAATTTCTGACCAGCATGGCGTCCGGTGATGATTCACTGGATTGCCCACCGGAAATAGGTGGTAGTGGCAGAATGAGCCCAGCAGATCAGGGTGAAGAGGAGGATGAAGATGTTATGGCTGCAGCAGAATCAATTTTATCGAGAACGGCAGAACGGACAAACCAGCCAATATATCACTGCGAGTACTGCAATAAGAGCTTCACTTGGCTTAAATCCCTCACGGTGCATCTTCGCACTCATACCAACGTAAAGCCGTATAAATGCGAATTATGCGATAGGTCTTTTGTAAGGTCCGATTATCTCAAATACCACATCATAAAGTCCCATGAAACTAACGAACAGGTTTTTACCTGTACTGCTTGTTCCGGAGTTTTTGCGACTAATCGAGGTTTGCTGCGGCATATTCGTACCGAACATGGCGGACATATTGAACGGAGGGAAATAAATTCCACGAGTGTGGACTGTCCTTCGGACAGCGGATCGTTCGCTGAAGTTGATGAACATGGAAAGTTTGCCTGTACTTACTGCGACGAGTCTTTCGTTGCTCGCAACCAGTTAGTGGATCACATGAAACGTCACTTGGGCGAAAAACCATTCCGATGTGATCTTTGTACGAAATCCTTTATTCGACAGGATTTCCTGCAATGTCATCGTTCCAACCATTTGAAATCAATGGATTATAAGCAGAATGGATTTCCGTCTGAAACATCCAAACGACCACGAATCAGCCTGAAGAAAATGGAAGATCTGGTACAATCCAATTCTGCTTCTAGGGCAGAGTCGAGCGATGATGAAGCGGATGAAGGCGGTGCAAGCTCTTCGGATAGCGAGAACCAGGATGAGTTGGATGTGGAAGAAAGCGAAGAACAGAGAAGTTTACTGGCAGCGTTACTGAAAGAGGTTTCCAAAACGGACGACGATCGACTTCAGTGTCCGCGGTGCGAGAAGACATTCCCGGAGCAGTCAGCGTTGAAGATGCACCTAAGGACGCACACTGCGATTACCCCGTTCAAATGCCCACTATGCAGCTTGGCATTCATTCGATCCGACTATCTGAAGAACCATCTGAAGAAACACATCGAAGACAATGGCGAGGATCCCGGAGCGCCAGGAGCAATTGATACCTCTACCTTATCGTTCAGCATGTCCAGCTTTGCAAACACAGTAACTGCCGCAACATCGTCACAATCGTTGCTCAAACCGATTAGTGCTCGGCCGCAGTCGACTGGAATCTCACTGCTTAAACCACCCGAGGAGAGAAAACCTCCCGATCAGCAAGAGTACTGCATCCGAACTGATGACGGTAAATTCATGTGCACAGTGTGTGAACGGGTGTTCTCCCATCAGCAAACCGTACGTATTCATTTTCGGATCCATACCAACGAGAAACCGTACAAATGTAGTCACTGCTCCGAATCGTTTATTCGGTCGGACTATCTGGAGAGGCATATGAAGGTGCACTGGAAAGATGGTCCGGGCATCCTGCCTGCGATGGTGGGAAGGAGCtctttggttccatttggggcgTCGGATAGTAGTGACTCGACGAGTCCCCAGAAACTGACCATTGGTCGGGCTGGTTTACTCCCGGAGAACTATCACTTTGTCGAAGCAGGTGATGGTCAGTATGCATGTAAAATTTGCGAACAAGTATTCACACATAGTGATTCATTGCGGAAGCATGCGCTCACCCACACGGAGGAAAAACCTTTCTTCTGCGATATCTGTGATCGATCTTTCAATAGGGTCGACTACCTTAAGGAGCATTTCAAATCGAAACGGCACCGACAAGCGCTAGCTGAGACGAACGGCGAGACGATCGAAGAAGATGATGATTCCACCACCGATACAAGTCTTACCGGACGTATGGCCAAGACAAAGTCCCCGATCAGCCCCATGACGAATGCTCTGGCAGAACGAATAGAATTCCAGCGAACCGATGACGGCCGCTACAAGTGTACAGAGTGTGACAAAACGTTCGTCACGGCGGTTACACTTAAAATGCATCTGCGGTTACATACGGGCGAGAAGCCGTACAAGTGCAGCATGTGCAGTATGGCATTTATTCGGTCGGATTACTTGAAAACGCATGAAAAAATACACCGACAGGAAGCGTACATGAGTCATCGACGGATGAGGGTTAAGGAAgatgatgacgatgacgatGGCGTAGATAGAAGTTCTGGCGATGAATCGGGAGATGAGACTGGTATGCACCAAGTGCATACGACGGGTGACTACAATGGTCGGCTAGATGTCAAACAAGATCCGGAGATACATATCGAGGATACAGTTGCCGTTGATGATGGTGAGGAAGCTGAAGAGGAGGAGGAAGAAGAGGACGACAGTGAAGATGAACAGGTTATTGAAGTGATGGTGAAAGAGGAAGACTCCGACGATGACGAAACTGAAGAGGAAGATGACGAAGGGGAAGAAAATCAGGATGACCAACAAGAGGAGGAGGAAGAGGAAAATGATAACAATAATAGCTACGAGAACGAGGATAGTGCATCGAGGGCAAGTGGTGGAGCCGGGTCCGAACCCACTGGTCCAAAGACCAAACACCGCTGTCATGTTTGTAGAAAGGAATTTGCCTGGCCCAAATCCCTGAAAATTCACCTCAGGACGCATACTGGTGAGCGGCCTTACGAGTGCGAGGTGTGTGGGAAAAGCTTCACCAGATCCGATAGCTTGAAGGCGCACCGTAATACACACGGTGATGTCAGGGTGCTACAGTGCCATTTGTGTGATGCAAGCTTTACGAATGAGAGCGGTCTGATACGACATCAAAAGTTGGAACACGGTATAGAACCACTGGATGTTTGA
Protein Sequence: MNEIEVKQEKDVDVDVQHQGGTAASDENCGSDQEIVVGIDEDHIKFLTSMASGDDSLDCPPEIGGSGRMSPADQGEEEDEDVMAAAESILSRTAERTNQPIYHCEYCNKSFTWLKSLTVHLRTHTNVKPYKCELCDRSFVRSDYLKYHIIKSHETNEQVFTCTACSGVFATNRGLLRHIRTEHGGHIERREINSTSVDCPSDSGSFAEVDEHGKFACTYCDESFVARNQLVDHMKRHLGEKPFRCDLCTKSFIRQDFLQCHRSNHLKSMDYKQNGFPSETSKRPRISLKKMEDLVQSNSASRAESSDDEADEGGASSSDSENQDELDVEESEEQRSLLAALLKEVSKTDDDRLQCPRCEKTFPEQSALKMHLRTHTAITPFKCPLCSLAFIRSDYLKNHLKKHIEDNGEDPGAPGAIDTSTLSFSMSSFANTVTAATSSQSLLKPISARPQSTGISLLKPPEERKPPDQQEYCIRTDDGKFMCTVCERVFSHQQTVRIHFRIHTNEKPYKCSHCSESFIRSDYLERHMKVHWKDGPGILPAMVGRSSLVPFGASDSSDSTSPQKLTIGRAGLLPENYHFVEAGDGQYACKICEQVFTHSDSLRKHALTHTEEKPFFCDICDRSFNRVDYLKEHFKSKRHRQALAETNGETIEEDDDSTTDTSLTGRMAKTKSPISPMTNALAERIEFQRTDDGRYKCTECDKTFVTAVTLKMHLRLHTGEKPYKCSMCSMAFIRSDYLKTHEKIHRQEAYMSHRRMRVKEDDDDDDGVDRSSGDESGDETGMHQVHTTGDYNGRLDVKQDPEIHIEDTVAVDDGEEAEEEEEEEDDSEDEQVIEVMVKEEDSDDDETEEEDDEGEENQDDQQEEEEEENDNNNSYENEDSASRASGGAGSEPTGPKTKHRCHVCRKEFAWPKSLKIHLRTHTGERPYECEVCGKSFTRSDSLKAHRNTHGDVRVLQCHLCDASFTNESGLIRHQKLEHGIEPLDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00948996;
90% Identity: -
80% Identity: -