Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:411523797-411525760[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.11 11 8.7 2.7 1 19 97 115 97 119 0.92

2 17 1e-05 0.001 21.4 0.9 1 23 124 146 124 146 0.99

3 17 2.2e-05 0.0022 20.3 2.4 1 23 152 174 152 174 0.98

4 17 0.00093 0.094 15.2 8.5 2 23 196 217 195 217 0.96

5 17 5.6e-07 5.7e-05 25.3 0.6 1 23 223 245 223 245 0.98

6 17 8.1e-08 8.3e-06 28.0 0.8 1 23 251 273 251 273 0.99

7 17 9.4e-06 0.00095 21.5 1.2 1 23 279 301 279 301 0.99

8 17 1.3e-05 0.0013 21.1 0.6 1 23 307 329 307 329 0.99

9 17 0.29 30 7.4 1.1 1 20 335 351 335 353 0.82

10 17 4.3e-05 0.0044 19.4 2.5 1 21 377 397 377 399 0.95

11 17 0.00034 0.035 16.6 1.2 1 23 405 427 405 427 0.93

12 17 1.1e-05 0.0011 21.3 0.3 1 23 433 455 433 455 0.97

13 17 0.00093 0.094 15.2 4.3 1 23 461 483 461 483 0.98

14 17 0.006 0.61 12.7 4.1 1 23 489 511 489 511 0.94

15 17 3.2e-06 0.00033 22.9 0.5 1 23 517 539 517 539 0.98

16 17 5.7e-06 0.00058 22.2 0.2 1 23 545 567 545 567 0.99

17 17 0.00099 0.1 15.1 5.4 1 23 572 594 572 594 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.11	11	8.7	2.7	1	19	97	115	97	119	0.92
2	17	1e-05	0.001	21.4	0.9	1	23	124	146	124	146	0.99
3	17	2.2e-05	0.0022	20.3	2.4	1	23	152	174	152	174	0.98
4	17	0.00093	0.094	15.2	8.5	2	23	196	217	195	217	0.96
5	17	5.6e-07	5.7e-05	25.3	0.6	1	23	223	245	223	245	0.98
6	17	8.1e-08	8.3e-06	28.0	0.8	1	23	251	273	251	273	0.99
7	17	9.4e-06	0.00095	21.5	1.2	1	23	279	301	279	301	0.99
8	17	1.3e-05	0.0013	21.1	0.6	1	23	307	329	307	329	0.99
9	17	0.29	30	7.4	1.1	1	20	335	351	335	353	0.82
10	17	4.3e-05	0.0044	19.4	2.5	1	21	377	397	377	399	0.95
11	17	0.00034	0.035	16.6	1.2	1	23	405	427	405	427	0.93
12	17	1.1e-05	0.0011	21.3	0.3	1	23	433	455	433	455	0.97
13	17	0.00093	0.094	15.2	4.3	1	23	461	483	461	483	0.98
14	17	0.006	0.61	12.7	4.1	1	23	489	511	489	511	0.94
15	17	3.2e-06	0.00033	22.9	0.5	1	23	517	539	517	539	0.98
16	17	5.7e-06	0.00058	22.2	0.2	1	23	545	567	545	567	0.99
17	17	0.00099	0.1	15.1	5.4	1	23	572	594	572	594	0.95

Sequence Information

Coding Sequence: ATGTCCTTTCTGAAAGCAAAGGATTGGGATCTAACGCAAACTCAGCGTGCTAACAATGCTGATCGAAGAAACGAAAACCTAAACGATTTCATTCCAAGTAAATTAACCGATATCAAAAAGAATAATTTCGATTATTCGAATTCAAATCATGGTTCAGAAAACAGTGAGCATTCAAATGTCATTTCTGGAAGCTGTAATGAATACGAACAAACCGATGACCTACAAAACAATCAGCAAAACAGTCTACAGGAAAACATTCTTACCTCAACCACTGATACATCACGTCAACATGAATGCAAGCTTTGTGGTAAACGATTCCTCCATAAAAAGAATCTGGACGAACATGATTTGCTACATCGGGTACGCCCTTTTCGTTGTGATGTCTGTGGTAACACTTTCACTAGGAGCGACCGCCTATTGATTCATCAACGTTCACACACGGGTGAGCGACCGTTCAAGTGCACTGTATGCGACAAAGATTTTACCAGCCACTTTGCTTTAACCGGACACATGCGGCTTCATACCGATGAGCGCGCGGCTACCTTAATCGGACACAATCGTCTTCATGCGGAAGAGCGTCCCTGCAAGTGCACTGTGTGTGGCAAAGATTATTGCCACCAACATTCCCTAATCGAACACATGCGCCTTCATACTGGTGAGCGGTCATTCAAGTGCACCGTGTGCGATAAAGATTTTGCCCGTAAAAGCGTTCTAACTGCACACATGCGTCTTCATACCGGCGATAGGCCGTTTAAGTGTAACGTTTGCGGCCAAGATTTTACCCAGAGTGGTAGTCTAATTAGACACATGCGCCGTCATACGGGTGAACGTCCGTATAAGTGCAAACTATGCGGTGAAGCTTTTGCCAAAAACTGTACCTTAACCGCACACATACGTCTTCACACGGGCGAGCGGCCTTATAAGTGCACCATTTGCGGTGACGATTTTATTCGAAGAAACCAGCTAGCCAATCACATGCGCCGTCATAGGGATAACTATCATTACAAGTGTgatgtgtgtggtaaaaaaactGAAGACTTGAATACGCATATGTGCATTGTTAGCAGTGATTCACCACAAAGtgagaaaaaaatgctTCATCGGAATTCACACAAGGGTATGCGGCCGTATGAGTGTACCGTGTGCGGTAAAGCTTTTGCTCAGCAAAGCCATCTAGATGAACACACGCGTTGTCATACGGGCGAACGACCGTACAACTGCATTACGTGCGGTCAAGATTTTGCCAGACGCTTTTCGCTTACCAAACATATGCGCCTGCATACGGATGGCTCCATGTATGAGTGTGATGTGTGTGGTAAAGGATTCAGAGTCGCTACTAGCTTGAAGCGGCACAAGACCGTCCATACCGGTGAGCGGCTGTACAAGTGTACCATGTGCGGTAaagattttgcgaaaaaatgtTTTCTATCCGAACATATGAACTTTCATACGGGTGAACGACCACACAAATGCATCACGTGCGGGAAAACTTTTTACACAAGAGATGCTTTCGTCAAACACACGCGCTTTCATACGGGTAACTATACATTCAAGTGTGATATTTGTGGCAAAGGATTCGGTTCAAATACTCAGCTCAAAGAGCACACGAATATGCATACCGGTGAGCGGCCGTACAAGTGCGAGGCGTGCGGTAAAGGTTTTGCCCGAAAATCAGTCCTATCCTTACATATGCGCGTTCATACGGGTGAACGGCACAAGTGCATTACTTGCGGCAAAGATTTTGCTAAAAAATCTACCCTCACTCAACATATGCGCCATCATGTGGCTAGCGATACAATAGTGTGA
Protein Sequence: MSFLKAKDWDLTQTQRANNADRRNENLNDFIPSKLTDIKKNNFDYSNSNHGSENSEHSNVISGSCNEYEQTDDLQNNQQNSLQENILTSTTDTSRQHECKLCGKRFLHKKNLDEHDLLHRVRPFRCDVCGNTFTRSDRLLIHQRSHTGERPFKCTVCDKDFTSHFALTGHMRLHTDERAATLIGHNRLHAEERPCKCTVCGKDYCHQHSLIEHMRLHTGERSFKCTVCDKDFARKSVLTAHMRLHTGDRPFKCNVCGQDFTQSGSLIRHMRRHTGERPYKCKLCGEAFAKNCTLTAHIRLHTGERPYKCTICGDDFIRRNQLANHMRRHRDNYHYKCDVCGKKTEDLNTHMCIVSSDSPQSEKKMLHRNSHKGMRPYECTVCGKAFAQQSHLDEHTRCHTGERPYNCITCGQDFARRFSLTKHMRLHTDGSMYECDVCGKGFRVATSLKRHKTVHTGERLYKCTMCGKDFAKKCFLSEHMNFHTGERPHKCITCGKTFYTRDAFVKHTRFHTGNYTFKCDICGKGFGSNTQLKEHTNMHTGERPYKCEACGKGFARKSVLSLHMRVHTGERHKCITCGKDFAKKSTLTQHMRHHVASDTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -