Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:212295548-212307402[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00012 0.012 18.0 0.1 3 19 99 115 97 116 0.96

2 18 4.9e-05 0.005 19.2 0.6 1 23 125 147 125 147 0.97

3 18 0.00062 0.063 15.8 0.7 1 23 168 190 168 190 0.97

4 18 0.0006 0.061 15.8 2.5 1 23 197 219 197 219 0.98

5 18 1.8e-07 1.9e-05 26.9 1.5 1 23 225 247 225 247 0.98

6 18 5.3e-05 0.0054 19.1 1.8 1 23 253 275 253 275 0.98

7 18 4.8e-05 0.0049 19.3 0.7 1 23 660 682 660 682 0.96

8 18 0.22 22 7.7 5.9 3 23 690 710 688 710 0.97

9 18 2.8e-05 0.0029 20.0 0.8 1 23 716 738 716 738 0.98

10 18 5.8e-05 0.0059 19.0 1.4 2 23 745 766 745 766 0.97

11 18 0.0052 0.53 12.8 4.9 1 23 780 803 780 803 0.95

12 18 0.014 1.4 11.5 0.2 1 23 808 830 808 830 0.97

13 18 0.00013 0.013 17.9 2.9 1 23 836 858 836 858 0.98

14 18 3.3e-06 0.00034 22.9 1.1 1 23 864 886 864 886 0.97

15 18 0.00021 0.021 17.3 0.3 1 23 892 914 892 914 0.96

16 18 1.1e-06 0.00011 24.5 3.3 2 23 921 942 921 942 0.98

17 18 1.7e-07 1.7e-05 27.0 1.4 1 23 948 970 948 970 0.98

18 18 0.002 0.2 14.2 4.3 1 23 976 998 976 998 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00012	0.012	18.0	0.1	3	19	99	115	97	116	0.96
2	18	4.9e-05	0.005	19.2	0.6	1	23	125	147	125	147	0.97
3	18	0.00062	0.063	15.8	0.7	1	23	168	190	168	190	0.97
4	18	0.0006	0.061	15.8	2.5	1	23	197	219	197	219	0.98
5	18	1.8e-07	1.9e-05	26.9	1.5	1	23	225	247	225	247	0.98
6	18	5.3e-05	0.0054	19.1	1.8	1	23	253	275	253	275	0.98
7	18	4.8e-05	0.0049	19.3	0.7	1	23	660	682	660	682	0.96
8	18	0.22	22	7.7	5.9	3	23	690	710	688	710	0.97
9	18	2.8e-05	0.0029	20.0	0.8	1	23	716	738	716	738	0.98
10	18	5.8e-05	0.0059	19.0	1.4	2	23	745	766	745	766	0.97
11	18	0.0052	0.53	12.8	4.9	1	23	780	803	780	803	0.95
12	18	0.014	1.4	11.5	0.2	1	23	808	830	808	830	0.97
13	18	0.00013	0.013	17.9	2.9	1	23	836	858	836	858	0.98
14	18	3.3e-06	0.00034	22.9	1.1	1	23	864	886	864	886	0.97
15	18	0.00021	0.021	17.3	0.3	1	23	892	914	892	914	0.96
16	18	1.1e-06	0.00011	24.5	3.3	2	23	921	942	921	942	0.98
17	18	1.7e-07	1.7e-05	27.0	1.4	1	23	948	970	948	970	0.98
18	18	0.002	0.2	14.2	4.3	1	23	976	998	976	998	0.98

Sequence Information

Coding Sequence: ATGGAAGGTTCGATGCAGATTCGATTAGAACCTGAGGCAATAACTCAACCAGAAATCCAGTGCGACAGTTATACTGATACAACTATAGTACACCTAAAACAAGAAAATGCTGTGGAGGAATCGACCGATACGGAAGTGAATACTCACGAGAATAACAGTAGTCTCTTCGAAGGTCATGCCTCGGAAAAATCATCTGTTTCTTCCAGAAACTACAATGAACCCGACCAAAGAAGCGACAACAGCCAGCAGATCGGTTCGACGATTCCGCCCGCCGATTCCACACAACCATACGGATGCGAGTATTGTGGCAAACGGTTCATTCAGAGAAGCCAGCTAATCAAGCACGCGTGGGCTCATCTCGGCGAACGACTGTTTAGATGTGATGTGTGCGAGAAGACATTTGTCACTAGCACCAGCTTACGGTTACATTTGGGGTCGCACAGCAGAGAAAAGCAGCACAGTCTATCGGATCATCAAATACCCCGCACCACTAAGAAGTCACACAAGTGCACTGTGTGTGAGGAGGAATTTCCTCGCAGATCTGCTTTATCCGAACACAGGTCGATTCACAAGCCTGCGCCGGGACGGTACAAGTGTACCGTTTGCTGCAAAGGATTTACCAAGAACTCTTCCCTAGCCACACACATGCTCATTCATACGGGGGAACGGCCCTACAAGTGCCCCGTGTGCGATAAAAATTTTACCCAGAAGTCTACCCTAACGACACACATGTCCCTTCATACGGGTTACTATCGACACACTTGTGATGTTTGTGGCAAAGGATTCAACGCAAGTACTTTCTTGAGGAATCACATGAGAAGCCATTCCAAGAAGCCGTCGGAAAGCCAAACACAATCCGTGGAAGAGACTAAGAAATTCGTGCAAAGTAAATTTGAACCTGTTAAGTTCGGCGTGAAAGATATGCGTTACCGTGACACTGGAGAAGTGATAATCCGATGTGAATCAAGCGCACTTGCATCGGAGATGGTACCGGTTGCTCAAGAAACGGTCAGTAACACATACGAGATTGCATCACAGAAACCACCGAAGCCAAGATTGAAAGTGACTGGAATTGCGGAGGAAATTGATGCCAATGAGCTCGCAGACAGGCTGAAAAAACAAAACCGCCTCCCGGAAGCAGCCAATTCGAAAAATTGTTCGCCTGCATCACTAGTGCCAGTACCTTACATCGGCACTTGTACCCTGAGAAGAATTGCACTACCACACATCAAACTGACATCACGGGATTATCTTTTCTCGTATGAATCATCTTCGGATCCGGTGGCCGATAGTCATTTCGTCAATCGTCAGTATACGAGTGGAGATTCCAATAGCGATTCAACGATACACACTGACGGTCATATTACGGTGTATTATCAAAATGTACGAGGACTCCGAACTAAGATTGATGGTTTCCTCTTGGATGtgtcagatgaaaaatattaTCTTACCGTGCTGACCGAAACCTGGCTGAATAATGAAATCCACTCTGCTCAACTGTTTTTTAATGTCTACACAGTTTACCGGAACGATCGTGATCCTATTTCTTCTCAAAAAAAAGTAGAGGAGGGGGCGTACTTATTGCCGTCTCCAATAAGCATAGTTCCGCAAAAGTCGGGACTCGAGTTAGCGCTGCTGTTGGACACCTATGGGTTAATGTTTTTGGTGCAtgAAGTGGAAGAATCGCAGCGAATTAAGACAGAGACGACAGATTCCGATCAAACAGAAACACAGTACAATAGTAATACTGAGGAAAAGATAGAAACCCTAAAACAAGAATATTTCGATACAAACAGTTCAATCGATATCGAAGATTTCCACATAAACGCCACCTATGAATCAGACTTCAATGATTTCGATCAATGCGATATTAAATTGATAGACTCCCAAGTACAAAATGACGCACAGAACAACGAGGAAACCCCCGAAAGCCCACAGGAGGCATCTTTCATTTCAACCAGTGATCCCACGAGGCAACACGAATGCGAAATTTGTGGAAAACGATTTCCCAGCAGGAAAAGTTTGATACAACACTCCTTAATTCATGGCGATGAACGGCCCTTCGGCTGCGATATTTGCAGTAAGACATTTCTTAGGCGCCACGATCTTTTGCACCATCAGCATATCCACACCGGCGAGCGTCCGTACAAGTGCACCCTGTGCGGGAGAGGTTTTACCCAAAGACAGGTTCTAAATACCCACATGTCCATTCATACGGGCGTGTATCGGCGCAAGTGCGATTTATGTGGCAAAGGATTCAATACAAATACTCAGTTGAAGAGGCACAACCTCATGCATATCGATGGGACACTGGCCAGTGAGCAAAAGCTTTACAAACACATATGCAAATACTGTGATAAGCGATTCGTTCTACGCAAGCGTCTTATCCATCACATTCGACTTTATCACGACACAGTATACTTCAATTGCGATTTCTGCGGTAaacggtttctcgaaaataaCGCCCTAGCGGTACATCTACGTGAACACAATAGTGAAAGACCGTACGAGTGCACCGTGTGTGGCAAAGATTGCAAGCAAAAACGTGACCTAATCGTACATATGCACCTTCATACGGGCAGGGAAACGTTCAAGTGCACGATATGTGATAAAGAATATTCCCGCAAATCCTACCTAAGAGAACACATATCAGGTCACACGGGTAAACGATTGTACAGCTGCACCGTGTGTGGCAAAGAATTCACCGAGAGAGCTAGTTTAATCGAGCATAAGTATGTTCATTCGCGTAACCGACCCAATACGTGCACCGTGTGCGGTAAAAGCTTTGCCCGAAACGATTGCTTATCCAAACATATGCGCACTCATTCGGGGGAACGGCCCTACAAGTGCACCATATGCAACAAATCTTTTGCTCAAAGTTCTACTCTTACCACACACATGGCCCGTCACACGGGTGAGTATCGACACAAGTGCGACGTTTGCGGTAAAGGATTCGCTGCTAGATGTAAGTTGAAAAGGCACAAGCTGACACATGCTGGtgctaattcgaATGAATTTCGATATTCCATGGCTGTGGATTTGATGAGACCTTCGGTGAACTTGACTGAAGCAGAAAAAGCAACGCATGATGCAATTTTGGGAAAAAATCAGGAACGATTGACCTCGGCAAGAGATCGTCGTGTTGAACGAGCAGAATTCAATACCCTGCACCAGTGGGAGAATGGAAAAATAGAGGATTTTGTTAAACGACTGAAGAAAAAAGCAAATATGTGTGGTTATGACGCTGTGCAGCAGGATAAACGCTGGTATTAA
Protein Sequence: MEGSMQIRLEPEAITQPEIQCDSYTDTTIVHLKQENAVEESTDTEVNTHENNSSLFEGHASEKSSVSSRNYNEPDQRSDNSQQIGSTIPPADSTQPYGCEYCGKRFIQRSQLIKHAWAHLGERLFRCDVCEKTFVTSTSLRLHLGSHSREKQHSLSDHQIPRTTKKSHKCTVCEEEFPRRSALSEHRSIHKPAPGRYKCTVCCKGFTKNSSLATHMLIHTGERPYKCPVCDKNFTQKSTLTTHMSLHTGYYRHTCDVCGKGFNASTFLRNHMRSHSKKPSESQTQSVEETKKFVQSKFEPVKFGVKDMRYRDTGEVIIRCESSALASEMVPVAQETVSNTYEIASQKPPKPRLKVTGIAEEIDANELADRLKKQNRLPEAANSKNCSPASLVPVPYIGTCTLRRIALPHIKLTSRDYLFSYESSSDPVADSHFVNRQYTSGDSNSDSTIHTDGHITVYYQNVRGLRTKIDGFLLDVSDEKYYLTVLTETWLNNEIHSAQLFFNVYTVYRNDRDPISSQKKVEEGAYLLPSPISIVPQKSGLELALLLDTYGLMFLVHEVEESQRIKTETTDSDQTETQYNSNTEEKIETLKQEYFDTNSSIDIEDFHINATYESDFNDFDQCDIKLIDSQVQNDAQNNEETPESPQEASFISTSDPTRQHECEICGKRFPSRKSLIQHSLIHGDERPFGCDICSKTFLRRHDLLHHQHIHTGERPYKCTLCGRGFTQRQVLNTHMSIHTGVYRRKCDLCGKGFNTNTQLKRHNLMHIDGTLASEQKLYKHICKYCDKRFVLRKRLIHHIRLYHDTVYFNCDFCGKRFLENNALAVHLREHNSERPYECTVCGKDCKQKRDLIVHMHLHTGRETFKCTICDKEYSRKSYLREHISGHTGKRLYSCTVCGKEFTERASLIEHKYVHSRNRPNTCTVCGKSFARNDCLSKHMRTHSGERPYKCTICNKSFAQSSTLTTHMARHTGEYRHKCDVCGKGFAARCKLKRHKLTHAGANSNEFRYSMAVDLMRPSVNLTEAEKATHDAILGKNQERLTSARDRRVERAEFNTLHQWENGKIEDFVKRLKKKANMCGYDAVQQDKRWY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -