Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:8383120-8384508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7e-07 7.1e-05 25.0 3.7 1 23 42 64 42 64 0.98

2 15 0.026 2.7 10.7 1.0 1 23 70 92 70 92 0.91

3 15 5.1e-06 0.00052 22.3 5.9 1 23 98 120 98 120 0.97

4 15 8.8e-05 0.009 18.4 6.8 1 23 126 148 126 148 0.98

5 15 0.00035 0.036 16.5 2.1 1 23 154 176 154 176 0.98

6 15 5.9e-07 6e-05 25.3 0.5 1 23 182 204 182 204 0.97

7 15 1.8e-07 1.8e-05 26.9 0.9 1 23 210 232 210 232 0.99

8 15 1.4e-05 0.0014 21.0 1.3 1 23 238 260 238 260 0.98

9 15 1.9e-07 1.9e-05 26.9 1.0 1 23 266 288 266 288 0.99

10 15 2.4e-06 0.00025 23.3 1.5 1 23 294 316 294 316 0.99

11 15 4.5e-05 0.0045 19.4 0.5 1 23 322 344 322 344 0.93

12 15 3.5e-07 3.6e-05 26.0 1.3 1 23 350 372 350 372 0.98

13 15 0.015 1.5 11.4 0.7 1 23 378 400 378 400 0.95

14 15 1.3e-05 0.0013 21.1 2.2 1 23 406 428 406 428 0.98

15 15 5.6e-06 0.00057 22.2 0.3 1 23 434 456 434 456 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7e-07	7.1e-05	25.0	3.7	1	23	42	64	42	64	0.98
2	15	0.026	2.7	10.7	1.0	1	23	70	92	70	92	0.91
3	15	5.1e-06	0.00052	22.3	5.9	1	23	98	120	98	120	0.97
4	15	8.8e-05	0.009	18.4	6.8	1	23	126	148	126	148	0.98
5	15	0.00035	0.036	16.5	2.1	1	23	154	176	154	176	0.98
6	15	5.9e-07	6e-05	25.3	0.5	1	23	182	204	182	204	0.97
7	15	1.8e-07	1.8e-05	26.9	0.9	1	23	210	232	210	232	0.99
8	15	1.4e-05	0.0014	21.0	1.3	1	23	238	260	238	260	0.98
9	15	1.9e-07	1.9e-05	26.9	1.0	1	23	266	288	266	288	0.99
10	15	2.4e-06	0.00025	23.3	1.5	1	23	294	316	294	316	0.99
11	15	4.5e-05	0.0045	19.4	0.5	1	23	322	344	322	344	0.93
12	15	3.5e-07	3.6e-05	26.0	1.3	1	23	350	372	350	372	0.98
13	15	0.015	1.5	11.4	0.7	1	23	378	400	378	400	0.95
14	15	1.3e-05	0.0013	21.1	2.2	1	23	406	428	406	428	0.98
15	15	5.6e-06	0.00057	22.2	0.3	1	23	434	456	434	456	0.98

Sequence Information

Coding Sequence: ATGGATCAGATAAATATGTCTTCGAAACAACGGAAGCGAACCGAAGGTGACGTATGTGCACAAGAATTTCTTCGGAATCGTCTCCTGGGGCGAACTATGTTAACCGATACTGGCAAGCGACCGTACAAATGTCATATATGTGAAAAATCATTTAACCGTCAGAGTGACTTAACTTTGCACAAAAAGATACACAGTAATGAACGACCACATAAATGCAAGATATGTGGCAAAGGATTCCTTCAGAAGAAGCTGGTTGAACCACATATGGTAACTCACACTGGCGAGCGGCCGTATAAATGTGATATATGTGACAAATCATTTGCCCATCAGAGTACCTTATGTAGGCACAGAACGAATCACAGTAATGAACGACAGCATAAATGCGAGATATGTGGCAAAGAATTCCTTCAGAAGCATCACCTGAAGCAACATATGTTAACTCACACTGTCCAGCGGCTGTACAAATGTGATATTTGTGGCAAAACGTTTAATAAGGAGAAAATTTTTAGTAGGCACAGAAAAATTCACAGTGATAAACGACCACATATATGCGAGGTATGCGGCAAAGGATTTCCTCGAAAGTATCTGCTTGAGCAACATATGTTAACTCACACTGGCGAGCGGCCGTATAAATGTGATATATGTGGAAAATCATTTACCCAACAGAGTGTCTTAACTTTACACAGAAAAATTCACAGTGATGAACGACCGCATAAATGCGAGATATGTGGCAAAGGATTTCTTCAAAAGTATCTGCTTGAGCAACATATGCTAACTCACACTGGCGAGTTGCCGTACAAATGCGAGATATGTGGCAAAGGATTCGTTCAGAAGTGTTGGCTTGCGCGACATATGTTAACTCACACTGGTAGGTTACCGTACAAATGCGAGATATGTGATAAAGGATTCATTCAGAAGTGTGTGCTTGAGCGACATATGTTAACTCACACCGGCGATCGGCCGTTCAAATGTGATATCTGTGGCAAATCATTTTATGAGACGCGTAACTTGAAACTACATGTGGTAGCTCACACTGGCGATCGGCCGTATAAATGTGATATATGTGAAAAATCATTTAACCGTCAGAGTGACTTAAATTTGCACAAAAAGATACACAGTAATGAACGACCACATAAATGCGAGATATGTGGCAAAGGATTCCTTCAGAAGAAGCAGGTTGAACCACATATGGTAACTCACACTGGCGAGCGGCCATACAAATGTCATATATGTGACAAATCATTTGCCCGTCAGAGTATCTTAACTGTGCACAGCAAGATGCACAGTAATGAACGACCGCATAAATGCGAGATATGTGGCGAAGGATTCGTTCAGAAGTATCTGCTTGAGCAACATGTGATAACTCACACTGGCGAGTGTGGGGAATAG
Protein Sequence: MDQINMSSKQRKRTEGDVCAQEFLRNRLLGRTMLTDTGKRPYKCHICEKSFNRQSDLTLHKKIHSNERPHKCKICGKGFLQKKLVEPHMVTHTGERPYKCDICDKSFAHQSTLCRHRTNHSNERQHKCEICGKEFLQKHHLKQHMLTHTVQRLYKCDICGKTFNKEKIFSRHRKIHSDKRPHICEVCGKGFPRKYLLEQHMLTHTGERPYKCDICGKSFTQQSVLTLHRKIHSDERPHKCEICGKGFLQKYLLEQHMLTHTGELPYKCEICGKGFVQKCWLARHMLTHTGRLPYKCEICDKGFIQKCVLERHMLTHTGDRPFKCDICGKSFYETRNLKLHVVAHTGDRPYKCDICEKSFNRQSDLNLHKKIHSNERPHKCEICGKGFLQKKQVEPHMVTHTGERPYKCHICDKSFARQSILTVHSKMHSNERPHKCEICGEGFVQKYLLEQHVITHTGECGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -