Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:445392072-445393409[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.3e-06 0.00054 22.3 2.9 1 23 30 52 30 52 0.97

2 15 3.8e-06 0.00039 22.7 2.7 1 23 58 81 58 81 0.97

3 15 1.4e-06 0.00014 24.1 1.0 1 23 87 109 87 109 0.97

4 15 0.13 13 8.5 0.8 1 23 115 137 115 137 0.86

5 15 0.002 0.2 14.2 1.0 1 20 143 162 143 164 0.94

6 15 4.1e-07 4.1e-05 25.8 1.2 1 23 170 192 170 192 0.98

7 15 5.8e-07 5.9e-05 25.3 3.2 1 23 198 220 198 220 0.99

8 15 0.0009 0.092 15.2 1.0 1 23 226 248 226 248 0.97

9 15 9.6e-07 9.8e-05 24.6 1.3 1 23 254 276 254 276 0.99

10 15 3.2e-06 0.00032 23.0 0.9 1 23 282 304 282 304 0.97

11 15 3.2e-05 0.0033 19.8 0.4 1 20 310 329 310 332 0.92

12 15 7.2e-06 0.00073 21.9 3.0 1 23 338 360 338 360 0.98

13 15 4e-06 0.0004 22.7 0.2 1 23 366 388 366 388 0.97

14 15 5.2e-05 0.0053 19.2 0.5 2 23 395 416 395 416 0.95

15 15 1.3e-07 1.3e-05 27.4 2.5 1 23 422 444 422 444 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.3e-06	0.00054	22.3	2.9	1	23	30	52	30	52	0.97
2	15	3.8e-06	0.00039	22.7	2.7	1	23	58	81	58	81	0.97
3	15	1.4e-06	0.00014	24.1	1.0	1	23	87	109	87	109	0.97
4	15	0.13	13	8.5	0.8	1	23	115	137	115	137	0.86
5	15	0.002	0.2	14.2	1.0	1	20	143	162	143	164	0.94
6	15	4.1e-07	4.1e-05	25.8	1.2	1	23	170	192	170	192	0.98
7	15	5.8e-07	5.9e-05	25.3	3.2	1	23	198	220	198	220	0.99
8	15	0.0009	0.092	15.2	1.0	1	23	226	248	226	248	0.97
9	15	9.6e-07	9.8e-05	24.6	1.3	1	23	254	276	254	276	0.99
10	15	3.2e-06	0.00032	23.0	0.9	1	23	282	304	282	304	0.97
11	15	3.2e-05	0.0033	19.8	0.4	1	20	310	329	310	332	0.92
12	15	7.2e-06	0.00073	21.9	3.0	1	23	338	360	338	360	0.98
13	15	4e-06	0.0004	22.7	0.2	1	23	366	388	366	388	0.97
14	15	5.2e-05	0.0053	19.2	0.5	2	23	395	416	395	416	0.95
15	15	1.3e-07	1.3e-05	27.4	2.5	1	23	422	444	422	444	0.99

Sequence Information

Coding Sequence: ATGGCAGCTGATTCTACAATATTACTGAAGCCAAAATCGGAGTTCGGGGATTACACAGACCTGCCTTCGAAGCAGCCCAAACGGTTGTTCAAGTGTGAGGTATGTGGCAAAGAATTCATTAGGAAAGCTCATTTGCAGCAACATTTCTTCACTCACACTGGTGAGCGGCAGCATAAGTGTGAAGTATGTGGCAAAGACTTCATTAGGAAAACTCACCTCCAAGAACACATCACCACCATCCACACTAATAAGCCATCCTATAACTGTGAAACATGTGGCAAAGCATTTTCCCGGCGAAATAACTTGACTTCGCACAAATTGATTCACAATCGTGAACGGCCGCATAAGTGCGAGGTGTGCGGCAAAGAATTCTTAATGATGAAGCGCCTGGAGCAACACGTTTCCATTCACGCTGGCGAACGTGCGCACAAATGTGAAGTATGTGGTAAATTTTTTACCTTACAGAATAGATTAGCAAAACACAAACTTTTATGTAGAGAACAGACGTATAAGTGCGAGGTATGTGGCAAAGATTTCCGCCAGAAGGTCCACCTACAGCAACACATTGACATTCACACTGGCAAGAGGGAGTTCAAATGTGACACATGTGGTAAAGATTTCATTCAGAAGACTCACCTGAAACAACACATGATTACCCACACCGGTGAGCGTCCACACAAATGTGAAATATGTGGCAAAGGATTCCTTCTGAAGTATAACCTGAAGGAACACGTTACTATACATACTGGTGCGCGAAACTATAAATGTGAAATATGTGGCAAAGATTTCATTCGGAAGGGTCTCCTGCACAATCATATTACCACCCACACCAAGGAGCGCACTTACAGATGTGAAACATGTGGCAAGGCATTTGCTCGGCGGACTTATTTGACAGCACATCAATTCCTTCATAGTAGAGAACGGCTATACAAATGCGAAGTGTGTGGCAAAGAATTCGTACGGAAGCAGCGCCTAGAGCGACACGTTCCCACTCATACTGGCATGCGGCTGCACGAATGCGAAATGTGTGGCAAAGCTTTCCATCTGAAATATAATCTGCAAAAACACATTATCACCCATAAAGGTTTGCGGCCTTACGAATGTGAAATATGTGGCAAAGCATTTAGTGAAAAGGGCACATTGACCTCGCACAAATCGATTCACAGTGGTGGAGGACTGAATGAATGTGAAATATGTGGCAAAGAATTTTTTATGAAGTCTGACCTACAGCGACATTTTACCATCCACACTCGTAAGCGGCAGTACAAATGTGAAACATGTGGCAAAGAATTCCGGTATAAGCAAAGCCTGCAGCGGCACATACGCTCTCACAGCTAG
Protein Sequence: MAADSTILLKPKSEFGDYTDLPSKQPKRLFKCEVCGKEFIRKAHLQQHFFTHTGERQHKCEVCGKDFIRKTHLQEHITTIHTNKPSYNCETCGKAFSRRNNLTSHKLIHNRERPHKCEVCGKEFLMMKRLEQHVSIHAGERAHKCEVCGKFFTLQNRLAKHKLLCREQTYKCEVCGKDFRQKVHLQQHIDIHTGKREFKCDTCGKDFIQKTHLKQHMITHTGERPHKCEICGKGFLLKYNLKEHVTIHTGARNYKCEICGKDFIRKGLLHNHITTHTKERTYRCETCGKAFARRTYLTAHQFLHSRERLYKCEVCGKEFVRKQRLERHVPTHTGMRLHECEMCGKAFHLKYNLQKHIITHKGLRPYECEICGKAFSEKGTLTSHKSIHSGGGLNECEICGKEFFMKSDLQRHFTIHTRKRQYKCETCGKEFRYKQSLQRHIRSHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -