Tyan046610.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058070.1:55398762-55444691[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 9.3 9.5e+02 2.6 0.0 5 23 114 132 113 132 0.93 2 29 0.012 1.2 11.7 2.2 1 23 151 173 151 173 0.98 3 29 0.012 1.2 11.8 2.2 1 21 178 198 178 200 0.94 4 29 0.0004 0.04 16.4 6.3 1 23 206 228 206 228 0.98 5 29 0.92 94 5.8 0.0 5 20 361 376 360 378 0.91 6 29 0.0029 0.3 13.6 0.8 1 23 398 420 398 420 0.98 7 29 0.00065 0.066 15.7 1.0 1 23 425 447 425 447 0.97 8 29 0.00032 0.033 16.7 6.4 1 23 453 475 453 475 0.98 9 29 0.22 22 7.8 0.0 1 19 481 499 481 501 0.92 10 29 0.011 1.1 11.8 0.2 1 23 648 670 648 670 0.94 11 29 0.0029 0.3 13.6 0.8 1 23 689 711 689 711 0.98 12 29 0.00013 0.013 17.9 0.7 1 23 716 738 716 738 0.97 13 29 0.11 11 8.7 5.3 1 23 744 766 744 766 0.94 14 29 0.044 4.5 9.9 0.0 1 19 772 790 772 792 0.94 15 29 0.029 2.9 10.5 1.7 3 23 816 836 814 836 0.97 16 29 2.5 2.6e+02 4.4 0.2 1 11 841 851 841 852 0.93 17 29 5.2e-05 0.0053 19.2 0.7 1 23 976 998 976 998 0.98 18 29 0.004 0.4 13.2 0.5 1 23 1017 1039 1017 1039 0.97 19 29 0.032 3.3 10.4 1.1 1 23 1044 1066 1044 1066 0.98 20 29 0.17 17 8.1 5.7 1 23 1072 1094 1072 1094 0.97 21 29 5.2e-05 0.0053 19.2 0.7 1 23 1224 1246 1224 1246 0.98 22 29 0.013 1.3 11.6 0.4 1 21 1265 1285 1265 1286 0.96 23 29 6.2e-05 0.0063 18.9 1.1 1 23 1292 1314 1292 1314 0.97 24 29 0.0027 0.28 13.7 2.0 1 23 1320 1342 1320 1342 0.95 25 29 0.035 3.6 10.2 0.0 1 20 1348 1367 1348 1369 0.93 26 29 0.00025 0.025 17.0 0.3 3 23 1392 1412 1390 1412 0.97 27 29 0.0067 0.68 12.5 1.5 1 23 1417 1439 1417 1439 0.98 28 29 3.5e-05 0.0035 19.7 3.1 2 23 1446 1467 1445 1467 0.96 29 29 0.0011 0.11 15.0 1.1 1 23 1473 1495 1473 1495 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAGCAAAATCCAAAATCTAATGAGGAGAATAAACTAGGAGAACCCGTCGAAGTCAGTAGCTCTATTCAGAAAGTAGAAGAAATTGAAAAGTTAGTTATATTGCCCGAAAAAACTAACAGGGACAGCATACTAAAAGAACCCGTTGAATTGAATACCTCAATGCAAGTAAAAGTAAAGGAAATAGAAATAATAGATACGCTACCTAAAAATACTAATAAGGAGAACAATTTAGGAGAACCCGTCGGATTCAACGCCCCTATTCCGATAAAAATAGAAGAAATCGAAATAATAGATTCATTGACTGAGCTAAAATCTGAAACGCAAGAAGTGGATGTTTGTGACGAAAAATTCCCATTTATCTCCCTGCTTGATGATCATCAATTGGATCACACGAAAGATGAACATTCAAACAGTGGTCCTAGTACCTATGAAGATGAAAACCCTTACATTTGTGATTTGTGTGGAAGGCGTTATTGTAAGCTCGTCCAAATCAGAGATCATATGAAATATCACAAAGGAAAACCTTTCAAATGTGATCTGTGTGAGAAGGCATATGCCACAATTAGCAATCTCAATGAACACAAGAAATGTCACACGACCGATAAGCCATTCAAATGTGAATTGTGTGGAAAGCCATTTCATTCGCGCCACCAGCTGAAACGGCACTCAAAAAGTCATTCGAGTGAGGCACCTTTCAACTGTGTCTACTGCATGATCATGGAGCAGCAAAATCCAAAATCTAATGAGGAGAACAAACTAGGAGAACCCATCGAATTCAATCCCTCTATTCAGTTGAAAGCAGAACAAATCGAAAAGATAGATACATTGTCTGAAAAAACTGACAGGGACAGCAAACTAACAGAACCCGTCGAATTAAACAACTCAATCCAGATGAAAGTAGAACAAATGGAAATAATACATACACCGCCTGAAAATGCTAATAAGGAGAACAATTTAGGAGAACCCGTCGGATTCAACGCTCCGATGAAAGTAGAAGAAATCGAAATAATAGATTCATTGACTGAATTAAAATCAGAACCACAGGAAGCGGATGCCGTCAGCCACCGAGTTGAGGTTTGCGGCGAAGAATTCCCAAATATCTCCTTGCTTAATAATCATCGATTGAATCAGATGAACGATGAACATTCAAATAGTGGACAAAGCACTTACGAAGACGAAAATCCCTATATTTGTGATTTGTGTGGAAGACGTTATCGTAAACTCGTCCAGATCAGAGATCATATGAAATATCACAAAGGAAAATCGTTCAAATGTGACCAGTGTGAGAAGGCATATGCCACAATTAGCAATCTCAATGAACACAAGAAATTTCACACGAACGATAAACCATTCAAATGTGAATTGTGTGGAAAGGCATTTCATTCGCGCCACCAGCTGAAACGGCACTCAAAAAGTCACTCGAGTGAGGCACCTTTCAACTGTGAGTTGTGCGGGGAAAGCTTTGCCATGCTCTGGGATCTTGTGCTTCACAAGGGAGATTACAGACTCAAGAATGAACTTTCTAAGTGCGTCAAACACGAATCATTCAGGGAAATTAGCACGGCATGTGTCTACTGCATGATCATGGAGCAGCAAAATCCAAAATCTAACAAGGAGAAAAAACTAGGAGAACCCGTCGAAATCAACGCCTCTGTTCAGTTGAAAGTAGAACAAATCGAAATGACAGAGACATTGTCTGAAAAAGCTGACAGAgacaataaaataaaagaacCCATCGAATTAAACACCTCAATCCAGGTGAAAGTAGAAGAAATGGATATAATAGACACACCGCCTGAAAATGCCAATAAGGAGAACAAATTAGGAGAACCCGTCGGATTCAACGCCCCTATTCCGATGAAAGTAGAAGAAATCGAAATAATAGATTCATTGACTGAATTAAAATCAGAACCACAGGAAGCGGATGTCGTTAGCCACCGATGTGAGGTTTGTGGCAAAGTATTCCCATTAATCTCCCTGCTTGATGATCATCGATTGGATCACACGAAAGATGAAGATTCAAACAGTGGTCCTAGTACCTGCGAAGATGAAAACCCTTACATTTGTGACTTGTGCGGAAGAAGATATCGTAAACTCGTCCAGATCAGAGATCATATGAAATATCACAAAGGAAAACCTTTCAAATGTGACGTGTGTGAGAAGCCATTTGCCACAATTAGCAATCTCAATGAACACAAGAAGTTTCACACGAACGATAAACCATTCAAGTGTGAGTTGTGTGAAAAGGCATTTCATGCGCGCCACCAGCTGAAAAGGCACTCATATAATCACACAACTGAGACACAGTTTAACTGTGAGCTGTGCGGGGAAGGATTTTCCACACTCTGGGACCTTGTGCTTCACAAGGGAGATTACAGGCTCAAGAATGAACTTTCTAAGTGCGTCAAACACGAATCATTCAGGGTAGTTAGTACAGCATGTGAGATATGTGGAAAGGAATATGATACGCTCAGAAAGCTAAAGTGCCATATGCAATCCCATAATGTGAGAATTCACAAATGTGACATGTGTGAGAAAGCATTTAGTATAATTGGTGTCTACTGTATGATCATGGAGCAGCAAAATCCAAAATCTAATGAGAACAAACTTGGAGAACCCGTCGAATTCAACGCCTATATTCAGTTGAAAGTAGAACAACTCGAAGTGATAGATACATTGGCTGAAACAACTAACAGGGGCACCAAACTAAGAAAACCCGTTGAATTAAACACCTCACTCCAGATGAAAGTAGAGGAAATGGAAGTAATAGTTGCAACGCCTAAAAATGTTAATGAGGAGAACAAATTAGGAGAACCAGACGAATACAACGCCCCTATTCCGATCAAAGTAGAAGAAATCGAAATAATAGATTCATTGACTGAATTAAAATCAGAACAAGAAGTAACGGATGCCGTCAGCTACCGATGTAAAGTTTGTGGCAAAGAATTCCCATCTTTCTCCCTGCTTAATGATCACCGATTGAATCACACGAAAGATGAACATTCAAACAGTGGTCCTAGTACCAACGAAGATGAGAATCCTTACATCTGTGATTTGTGTGGAAGACGTTATCGTAAACTCGTCCAGATCAGGCAACATATGATATATCACAAAGGAAAACCTTTCAAATGTGACGTGTGTAAGAAGCAACTTGCCACAATCAACACTCTCAATGAACACAAGAAATCTCACACGAACGATAAATCATTCAAATGTGAATTGTGCGAAAAGGCATATCATGCGCGCCACCAGTTGAAAAAGCACACATATAGTCACACGAGTGAGACACAGTTTAACTGTATCTATTGTATGATCATGGAGCAGCAGAATCCAAAATCTAATGAGAACAAACTTGGAGAACCCGTCGAATTCAACGCCTCTATTCAGTTGAAAATAGAACAACTCGAAGTGATAGATACATTGGCTGAAACAACTAACAGGGGCACCAAACTAAGAAAACCCGTTGAATTAAACACCTCACTCAGCGTGAAAGTAGAGGAAATGGAAATAATAGATACACCGCCTGAAAATGTTAATAAGGAGAACAAACTAGGAGAACCAGACGGATACAACGCCCCTATTCCGATCAAAGTAGAAGAAATCGAAATAATAGATTCATTGACTGAATTAAAATCAGAACCAGAGGTAACAGATGCCGTCAGCTACCGATGTAAAGTTTGTGGCAAAGAATTCCCATCTTTCTCCCTGCTTAATGATCACCGATTGAATCACACGAAAGATGAACATTCAAACAGTGGTCCTAGTACCAACGGAGATGAAAATCCTTACATTTGTGACTTGTGTGGAAGACGTTATCGCAAACTCGTCCAGATCAGACAACATATGAAATATCAGAAAGGAAAACCTTACAAATGTGACGTGTGTGAGAAGCCATTTGTCACAACTAGCAATCTCAATGAACATAAGAAATTTCACACGAACGATAAACCATTCAAATGTGAATTGTGCGGAAAGGCATATTATGCGCGCTACCAACTGAAAAAGCACTCATTTAGTCACACGAGTGAAACACAGTTTAACTGTGAGTTGTGTGGGGAAGGATTTGCTACGCTCTGGAACCTTGTGCTCCACAAGGGGACTTTCAGGCTCAGGAATGAATTTTCTAAATGCGTCAAACACGAATCTTTCAGGGTAATTAGTACAGCATGTGATATATGCGGAAAGGAATACGATACTCTCAGAAAGTTAAAAGACCATATGCAATCTCATAATGTGAGAATTCACAAATGTGACCTATGCGAGAAGGCATTTAGTATAATGGGCCAGCTGACTGAACATAAGAAAAGTCACTTATATGAACGATCATGTGAATGTGAATCGTGTGGAAAAGGATTTTGTACGCCGAACGCATTGAAAAAGCACATGCTTACTCATTCAGATGAGAGACCATTCAAGTGTGAAATGTGCGAAAAAAGCTTTCTTCAGCGCAGTCAACTTAAAGCACATGAATTTGTGCACACTGATTATAAAAGTTACCAATGCAAAGTGTGCGGTATCACAGCAGACGAGCATTCGCGAGCAAAGCTTCCTACAATTGCTACCTACCAGATGAAAGCTTGCAAGAAAGCTTGGGTTTCTCGAGTATTCCCGCTCGCGGTTTTGATTCACCCGGGCGCGAACGATGAAGAACGCTAG
- Protein Sequence
- MEQQNPKSNEENKLGEPVEVSSSIQKVEEIEKLVILPEKTNRDSILKEPVELNTSMQVKVKEIEIIDTLPKNTNKENNLGEPVGFNAPIPIKIEEIEIIDSLTELKSETQEVDVCDEKFPFISLLDDHQLDHTKDEHSNSGPSTYEDENPYICDLCGRRYCKLVQIRDHMKYHKGKPFKCDLCEKAYATISNLNEHKKCHTTDKPFKCELCGKPFHSRHQLKRHSKSHSSEAPFNCVYCMIMEQQNPKSNEENKLGEPIEFNPSIQLKAEQIEKIDTLSEKTDRDSKLTEPVELNNSIQMKVEQMEIIHTPPENANKENNLGEPVGFNAPMKVEEIEIIDSLTELKSEPQEADAVSHRVEVCGEEFPNISLLNNHRLNQMNDEHSNSGQSTYEDENPYICDLCGRRYRKLVQIRDHMKYHKGKSFKCDQCEKAYATISNLNEHKKFHTNDKPFKCELCGKAFHSRHQLKRHSKSHSSEAPFNCELCGESFAMLWDLVLHKGDYRLKNELSKCVKHESFREISTACVYCMIMEQQNPKSNKEKKLGEPVEINASVQLKVEQIEMTETLSEKADRDNKIKEPIELNTSIQVKVEEMDIIDTPPENANKENKLGEPVGFNAPIPMKVEEIEIIDSLTELKSEPQEADVVSHRCEVCGKVFPLISLLDDHRLDHTKDEDSNSGPSTCEDENPYICDLCGRRYRKLVQIRDHMKYHKGKPFKCDVCEKPFATISNLNEHKKFHTNDKPFKCELCEKAFHARHQLKRHSYNHTTETQFNCELCGEGFSTLWDLVLHKGDYRLKNELSKCVKHESFRVVSTACEICGKEYDTLRKLKCHMQSHNVRIHKCDMCEKAFSIIGVYCMIMEQQNPKSNENKLGEPVEFNAYIQLKVEQLEVIDTLAETTNRGTKLRKPVELNTSLQMKVEEMEVIVATPKNVNEENKLGEPDEYNAPIPIKVEEIEIIDSLTELKSEQEVTDAVSYRCKVCGKEFPSFSLLNDHRLNHTKDEHSNSGPSTNEDENPYICDLCGRRYRKLVQIRQHMIYHKGKPFKCDVCKKQLATINTLNEHKKSHTNDKSFKCELCEKAYHARHQLKKHTYSHTSETQFNCIYCMIMEQQNPKSNENKLGEPVEFNASIQLKIEQLEVIDTLAETTNRGTKLRKPVELNTSLSVKVEEMEIIDTPPENVNKENKLGEPDGYNAPIPIKVEEIEIIDSLTELKSEPEVTDAVSYRCKVCGKEFPSFSLLNDHRLNHTKDEHSNSGPSTNGDENPYICDLCGRRYRKLVQIRQHMKYQKGKPYKCDVCEKPFVTTSNLNEHKKFHTNDKPFKCELCGKAYYARYQLKKHSFSHTSETQFNCELCGEGFATLWNLVLHKGTFRLRNEFSKCVKHESFRVISTACDICGKEYDTLRKLKDHMQSHNVRIHKCDLCEKAFSIMGQLTEHKKSHLYERSCECESCGKGFCTPNALKKHMLTHSDERPFKCEMCEKSFLQRSQLKAHEFVHTDYKSYQCKVCGITADEHSRAKLPTIATYQMKACKKAWVSRVFPLAVLIHPGANDEER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -