Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:211960337-211962802[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.2e-05 0.0022 20.3 1.0 1 23 114 136 114 136 0.98

2 20 0.0007 0.072 15.6 3.6 1 23 142 164 142 164 0.98

3 20 0.0011 0.12 14.9 1.4 1 23 170 192 170 192 0.97

4 20 1.4e-05 0.0014 20.9 2.1 1 23 198 220 198 220 0.99

5 20 0.63 64 6.3 4.4 1 20 226 245 226 247 0.92

6 20 0.014 1.4 11.5 0.2 2 17 255 270 254 271 0.93

7 20 9.7e-07 9.9e-05 24.6 1.6 1 23 353 375 353 375 0.98

8 20 6.1e-07 6.3e-05 25.2 0.4 1 23 379 401 379 401 0.97

9 20 0.045 4.5 9.9 5.4 1 23 407 429 407 429 0.97

10 20 0.00012 0.012 18.0 2.2 1 23 435 457 435 457 0.99

11 20 2.1e-06 0.00021 23.5 0.3 1 23 463 485 463 485 0.97

12 20 1.2e-05 0.0012 21.2 5.8 1 23 489 511 489 511 0.98

13 20 8.2e-05 0.0083 18.5 7.5 1 23 517 539 517 539 0.98

14 20 9e-07 9.2e-05 24.7 2.4 1 23 545 567 545 567 0.98

15 20 0.00029 0.029 16.8 0.2 1 23 573 595 573 595 0.97

16 20 1.3e-05 0.0013 21.1 2.3 1 23 601 623 601 623 0.97

17 20 6.7e-06 0.00068 21.9 4.1 1 23 629 651 629 651 0.98

18 20 0.0024 0.25 13.9 6.4 1 23 657 679 657 679 0.98

19 20 0.024 2.4 10.8 5.7 1 23 685 707 685 707 0.98

20 20 0.00016 0.016 17.7 0.6 1 20 713 732 713 734 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.2e-05	0.0022	20.3	1.0	1	23	114	136	114	136	0.98
2	20	0.0007	0.072	15.6	3.6	1	23	142	164	142	164	0.98
3	20	0.0011	0.12	14.9	1.4	1	23	170	192	170	192	0.97
4	20	1.4e-05	0.0014	20.9	2.1	1	23	198	220	198	220	0.99
5	20	0.63	64	6.3	4.4	1	20	226	245	226	247	0.92
6	20	0.014	1.4	11.5	0.2	2	17	255	270	254	271	0.93
7	20	9.7e-07	9.9e-05	24.6	1.6	1	23	353	375	353	375	0.98
8	20	6.1e-07	6.3e-05	25.2	0.4	1	23	379	401	379	401	0.97
9	20	0.045	4.5	9.9	5.4	1	23	407	429	407	429	0.97
10	20	0.00012	0.012	18.0	2.2	1	23	435	457	435	457	0.99
11	20	2.1e-06	0.00021	23.5	0.3	1	23	463	485	463	485	0.97
12	20	1.2e-05	0.0012	21.2	5.8	1	23	489	511	489	511	0.98
13	20	8.2e-05	0.0083	18.5	7.5	1	23	517	539	517	539	0.98
14	20	9e-07	9.2e-05	24.7	2.4	1	23	545	567	545	567	0.98
15	20	0.00029	0.029	16.8	0.2	1	23	573	595	573	595	0.97
16	20	1.3e-05	0.0013	21.1	2.3	1	23	601	623	601	623	0.97
17	20	6.7e-06	0.00068	21.9	4.1	1	23	629	651	629	651	0.98
18	20	0.0024	0.25	13.9	6.4	1	23	657	679	657	679	0.98
19	20	0.024	2.4	10.8	5.7	1	23	685	707	685	707	0.98
20	20	0.00016	0.016	17.7	0.6	1	20	713	732	713	734	0.95

Sequence Information

Coding Sequence: ATGGAAGACACCCTGCAGATTGAGCTGGAAGCAAAAGATTTCCAGTTAGCAGAAACTCACTACTCCAACTATACCGATCAAATATTTGATAATGTAGACCAAGACGATGGCACTGTAAATAAATCAACCGATATTGAAATTAATAATTTCGAATGCTCGAGTAAGGATTGTGACCCGGAGGGAGAGAGTACTCAACTCTTGGAAAGTACAAACACCGAGCAATTACCATTCGATTCCAAAAGCAACAATGCAACCCAACAAAACGAAAAAAATCTCATAGCCTCCGACAAACGAGACACCACTTTACAGGTAGTATCTCCCGAAGATTCCACACGACCACACCAATGCGAGGTTTGTGACAAGCGTTACGTCAAAAAATCAAGTCTGGTCGAACACGTCCGGGTACATAGTGGTGAAGGGCCCTTTAGTTGCGATATCTGCGGTAGGACATTTATCAGAAAATGCGATCGTGCTAATCATCGGAAACGCCACACCGATAAGCAATCGCACAGGTGCGCCGTGTGTGGCAAAGATGTTTCTCTCAAAGCTTGCTTAAACAGGCACATGCTCATTCACACGGCTGAACGGCCATACAAGTGCAGTCTGTGTGGCAAAGGTTTCATCCAAAACTGTAAGCTGGCATACCACATGCGGGTTCATACAGGTGAGCGGCCATACAAGTGTAACGTTTGTGGCAAAGATTGTATATACAAAAAGAAACAGACCACCCACGTGTGCCTAGATACGAGTGAGCGGCGGGACAAATGCAACCAGTGTGGCAAAGGTTTTAGCCCTCAAAACAATCTGACCATAGACAAGAACTTTCATACGGACGAACGGTGGTGCAAGTGCGACCGAACAACAGCTCAGCACTCCAATGATGTGAATTGTGGCACAAAGAAAGGTTCAGACATCCAACCATCACAACTCGATCCCAAATGCTACAGTGCATTGGATCAAAACGAAAAAAATCGATCTACTTCCGATACCCGAGACGATGTCGGTAGCGGTCTTCGGGTAGCATCTCCCGTTTCAAAGAGCCACTCCACACTGCCGTACGATTGTGAGATTTGTAGCAAACGATTCACACAGAAGAAGAACCTGTTGCAACATATCCAAACACATGAACGGACTTTCAGTTGCGATGTCTGCGGTAAGACTTTCCCTAGGAGTGTTGATCTGCGCCGTCATCAGTATATCCACACGGGTAAGCGGCCCTACCACTGCACCGTGTGCAGCAAAGACTTTCTCTCCAAAAATCATTTAAACACTCACATGTTTATTCACACGGGTGAGCGACCGTACAAGTGTAACGTCTGCAGCAAAGATTTTAtctacaaaaataaatttaccaatCACATGCTAGTTCATTCGAATAAGCAGCTGTTCAATTGCACTGTATGTGGCAAAGGTTTTACCCTCAAAGCAAACCTGACCACACACATGCTCATTCATACGCGGCCATACAAGTGCGACGAGTGTAGCAAACATTTTTCCCATCAATATAAGCTGACCAAACACATGGCCATTCATGCGAATAAACGGCCTTACAAGTGCAATATGTGTGATAAAAGTTATAACCATCAATCTTGTCTCACAACACACATGTTCAGTCATACGGGCGAGAGGCCGTTTCAATGCACCGTTTGTGGTAAGGATTTTACTAAAAAATATAAGCTGACCAAACACATGTCCGTTCATACGGATAAGTGGCCGTTCAAGTGTACTGTATGTGAGGAAGGCTTTTCCCAGCCAACGGAACTGGCCACACACAAGCTCCTTCATACGGGTGAGTGGCCTTACAACTGTACAGTGTGTGACAAAGGTTTTACCTACAAACATAAGCTGACCGCACACATGCTCCTTCATACGGGAGAGCGTCCTTTCAAGTGCACTGTGTGTGGTAAAGACTTTATCCACAAATATCAGCTGACCGCACACATGCACCTGCATACGAACGGGCGGCGCTACAAGTGCACCGTGTGTGTTAAAAGTTTTAGCCATAAAACTAACTTGACATGCCACATGTACATTCATACGGGTAATTGGCCTTACAAGTGCACTGTCTGTAGTAGAGGTTATACTGATAAATGTAAGTTTGATAAACACATGTACCGTCATACGGGTGAGTGGCCGTTCAAATGTTCGGCGTGTGGCAAATGTTTTGTGCACAAAGCTAGTCTAGCCATACACATTTCAGCGGAGAAGTGTGTGGCAAAGGATTCCTTGCAGAGTGTTGACTGA
Protein Sequence: MEDTLQIELEAKDFQLAETHYSNYTDQIFDNVDQDDGTVNKSTDIEINNFECSSKDCDPEGESTQLLESTNTEQLPFDSKSNNATQQNEKNLIASDKRDTTLQVVSPEDSTRPHQCEVCDKRYVKKSSLVEHVRVHSGEGPFSCDICGRTFIRKCDRANHRKRHTDKQSHRCAVCGKDVSLKACLNRHMLIHTAERPYKCSLCGKGFIQNCKLAYHMRVHTGERPYKCNVCGKDCIYKKKQTTHVCLDTSERRDKCNQCGKGFSPQNNLTIDKNFHTDERWCKCDRTTAQHSNDVNCGTKKGSDIQPSQLDPKCYSALDQNEKNRSTSDTRDDVGSGLRVASPVSKSHSTLPYDCEICSKRFTQKKNLLQHIQTHERTFSCDVCGKTFPRSVDLRRHQYIHTGKRPYHCTVCSKDFLSKNHLNTHMFIHTGERPYKCNVCSKDFIYKNKFTNHMLVHSNKQLFNCTVCGKGFTLKANLTTHMLIHTRPYKCDECSKHFSHQYKLTKHMAIHANKRPYKCNMCDKSYNHQSCLTTHMFSHTGERPFQCTVCGKDFTKKYKLTKHMSVHTDKWPFKCTVCEEGFSQPTELATHKLLHTGEWPYNCTVCDKGFTYKHKLTAHMLLHTGERPFKCTVCGKDFIHKYQLTAHMHLHTNGRRYKCTVCVKSFSHKTNLTCHMYIHTGNWPYKCTVCSRGYTDKCKFDKHMYRHTGEWPFKCSACGKCFVHKASLAIHISAEKCVAKDSLQSVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -