Tyan016465.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058069.1:21300630-21326164[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00023 0.023 17.1 1.3 1 21 93 113 93 114 0.95 2 17 5.4 5.5e+02 3.4 0.3 2 13 147 158 147 160 0.87 3 17 5.1e-06 0.00052 22.3 3.9 1 23 360 383 360 383 0.96 4 17 8e-06 0.00081 21.7 0.4 2 23 390 411 389 411 0.98 5 17 6.4e-06 0.00065 22.0 0.4 1 23 417 439 417 439 0.98 6 17 7.8e-05 0.008 18.6 0.7 2 23 446 467 445 467 0.96 7 17 1.5e-06 0.00016 24.0 4.1 1 23 473 495 473 495 0.99 8 17 1.7e-05 0.0018 20.7 0.5 1 23 549 571 549 571 0.98 9 17 1.5e-05 0.0016 20.8 2.5 2 23 578 599 577 599 0.98 10 17 1.7e-05 0.0017 20.7 0.7 1 23 605 627 605 627 0.98 11 17 5.3e-05 0.0053 19.1 0.1 2 23 633 654 632 654 0.97 12 17 1.8e-06 0.00018 23.8 1.7 1 23 660 682 660 682 0.99 13 17 5.5e-06 0.00056 22.2 1.3 2 23 740 761 739 761 0.98 14 17 1.2e-06 0.00012 24.3 1.0 1 23 767 789 767 789 0.99 15 17 0.00013 0.013 17.9 0.1 1 23 795 820 795 820 0.98 16 17 6.2e-05 0.0063 18.9 0.2 2 23 826 847 825 847 0.97 17 17 3.8e-06 0.00039 22.7 0.6 1 23 853 875 853 875 0.98
Sequence Information
- Coding Sequence
- ATGATACAAAAAAAAAGCGGTGAAGGTACCGATAGGAAACCCGCCGATGGAGTCAACCGGTTTCatcagcaacaacagcagcaaacGGCAACGATGACCAACGATTATGTAAAACAGGCGGTAGTACCCCAGGTGGCAACGATGGCGCCAGATCCACCGAAAGTTGTCCCACCGCCGCAATCCTGTAAATGTGAGTTCTGCGAGTACCTCCAGGCAAATCGAATCAGTTTAAGTGGTTCCGGTGGAGCTGGACCAGCGGTAGGAGGTGACCACGTGTTCCAGTGTGAGTTCTGCGGAGAAGGATTCGCCAGCCAGAGTAGCTTTAATCGGCATCGCTGCGGGAGTACTGACATTCAGGTGTACCGTTGCGAGTCTTGTAGGAAGGAATATGGGACATCCCGAACCGAGTCTAGTATTAATGGGTTGGAGGGAAGGGGAAAATGTGATATCTGCAATAGAAACTATGTGCAATCAACGACGGGAGAGATAGGAGTAACAGCGACGCTTTATGGGCAGGTTGGACGCCCTGCCCTGGCGGAGGCCAGCAGCTACAGTAACAAAGCCCCCGCCACAGACAGTCCGATGGAACAGGACCTCAGCAGCATTGAACCGTTTGGATCGGATAGTGAATGTATCAGTGACTTATTGACGGATGGAGCTAGTTCCACGGCGGCCGTGGTCGAACTTCAACAGACGAATCTTCCTGGGAAAACCTATTTCGTCTTGGGGAATGTAGAACTGCAGCAAATGACCAACGCCGGAGGTTCCTACATCCAGAATGCCAAAATCAGCAGCGAATCAAGTGTTACCAGCTTGCATCAGTACGATCAGTACGAAGATGAAGACTACTCGTCCATGTCCGAAGATGAAGCTATTGTTCCAATAGAACCCTATGCCAAATCGCCCAATCAGGAGCAAGCCAAAACCGAGTTGCCAATACAGGAGACGATCATAGACACCAGCAGTAACGTAAGCCTCCCGTTCAGTACTTCCAGCTTAACCGCGGGCATTATGGAGGAAGAGGGAAAGTGTGACTCGTCTAGCATAAGTACCGATTTGGGTCAGCCGGATCGACCTTTCAAGTGTCACATCTGTGATCGATCCTATCGGAACCATAAAAACCTGAAAGCGCACATAAAGGGAGCTCACGAAGGCGTTCGAGCGAATCAGTGCGAAATTTGCGGGAAGAATTTTTCCGGAAGTAGTTACCTAGTAATTCATCGGCGAAGGCACACGGGCGAGCGACCGTTCAAATGTAACACCTGTGGGAAGGCTTTCGTTGATAGTCGAGCCCTCTCGGTGCACACTCGTTTACATACACCCGGCAGTCGGTTGAAATGCATGAAGTGTGAAAAGACTTTCTCCAGCGCTTCCGCACTGACCGTGCATAACCGATTGCACACCGGAATCCATCCGTACAAGTGTGAAATATGCGAAAAGACTTTCCCACAGTACAACAACTTGAAGCATCATATGAAAAAACACGAGGCAGCCACGGAGCAACGGCAGGTATCTTCGCTGGAGGCGAGTTCGAGTCCTTGTTCTAgcaatagcagcagcagcatttgCAGCATCAGTAGTACTAGCAGTAGTAGtaatagtagtagtagtagtggcATCAGTAGCTCAGGCTCATCGCTGGAGTACAAATGTAACGTTTGCAGCAAACCGTTTGGAACTTCGGAAGAACTGCAGACGCACTTGAATCAGCACTGTAAGGATCGACCAAATCAGTGCGAGTTCTGCTCCAAGGTGTTTCCTCGTTCTTCTCATTTGATCATCCATCGAAGAAGGCATACAGGTGAACGGCCTTTCAAATGTAAATACTGCGAAAAGGCGTTTGTGGATTCTCGAGCTCTTTCTGTCCATACCAGGCTTCACACCGGCGAGAGGGTTACCTGCGACATCTGTCTTAAAACGTTTGCAAGCAGTTCGGGCTTGATTGTGCACCGCCGCATTCACCTCGGAATCCACCCGTACAAATGTGACTACTGTCCGAAATCTTTCGCTCAATCGACTGCCCTCAAGTACCACCTCAAGAAACATGACACCACAAATCTGCCAACGACTACCGGTGCTGACGAAACAAAAGCTTCAAGCGACCAGCAAAACGAATCCAGCCTGCAATCGGACCAATCGAATCCGGCCACGACAATGACGAGTTCATCACCttttcaacaacaacaacagcaatcAAAAGGTACAACCGGCCACGTAAAGTGCCAAGTTTGTAACAAATTCTTCCGTTCCGCGGAGTATTTAGCCAGGCACCGACGGACTCACTCTGGCGAGAGACCTTTCCAGTGCGAGATCTGCGGTAAAAATTTTAGCACCATGAGTTATCTTGTCATTCACCGTCGGCGACACACCTCGGAAAGACCGTACAAATGTCCGAACGCAGACTGCTCGAAAGCTTTCGTGGACAGCCGAGCCCTGCAGGAACACAGCCGATCGGTTCATTCGAAAATTCGCGTTCCCTGCGAAACGTGCTCCAAAACTTATTCGAGCGTTAGCAATCTGATCGTTCACCGGCGCATCCACAGTGGCGTTCATCCGTTCGAGTGTGACATCTGCGGGCGATCATTCGCCCAGAAGAATGCCCTCAAGTACCATTTAAAGCAACATGTCAGCAAACAGGAACCAAAACCAAAAGTGTAA
- Protein Sequence
- MIQKKSGEGTDRKPADGVNRFHQQQQQQTATMTNDYVKQAVVPQVATMAPDPPKVVPPPQSCKCEFCEYLQANRISLSGSGGAGPAVGGDHVFQCEFCGEGFASQSSFNRHRCGSTDIQVYRCESCRKEYGTSRTESSINGLEGRGKCDICNRNYVQSTTGEIGVTATLYGQVGRPALAEASSYSNKAPATDSPMEQDLSSIEPFGSDSECISDLLTDGASSTAAVVELQQTNLPGKTYFVLGNVELQQMTNAGGSYIQNAKISSESSVTSLHQYDQYEDEDYSSMSEDEAIVPIEPYAKSPNQEQAKTELPIQETIIDTSSNVSLPFSTSSLTAGIMEEEGKCDSSSISTDLGQPDRPFKCHICDRSYRNHKNLKAHIKGAHEGVRANQCEICGKNFSGSSYLVIHRRRHTGERPFKCNTCGKAFVDSRALSVHTRLHTPGSRLKCMKCEKTFSSASALTVHNRLHTGIHPYKCEICEKTFPQYNNLKHHMKKHEAATEQRQVSSLEASSSPCSSNSSSSICSISSTSSSSNSSSSSGISSSGSSLEYKCNVCSKPFGTSEELQTHLNQHCKDRPNQCEFCSKVFPRSSHLIIHRRRHTGERPFKCKYCEKAFVDSRALSVHTRLHTGERVTCDICLKTFASSSGLIVHRRIHLGIHPYKCDYCPKSFAQSTALKYHLKKHDTTNLPTTTGADETKASSDQQNESSLQSDQSNPATTMTSSSPFQQQQQQSKGTTGHVKCQVCNKFFRSAEYLARHRRTHSGERPFQCEICGKNFSTMSYLVIHRRRHTSERPYKCPNADCSKAFVDSRALQEHSRSVHSKIRVPCETCSKTYSSVSNLIVHRRIHSGVHPFECDICGRSFAQKNALKYHLKQHVSKQEPKPKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948986;
- 90% Identity
- -
- 80% Identity
- -