Tyan013673.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058068.1:201232601-201235541[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.033 3.3 10.3 1.2 2 23 58 79 57 79 0.93 2 23 0.002 0.21 14.1 1.4 3 23 87 107 85 107 0.98 3 23 0.0027 0.27 13.8 4.2 1 23 113 135 113 135 0.97 4 23 4.5e-05 0.0046 19.3 0.2 1 23 141 163 141 163 0.98 5 23 0.84 85 5.9 0.4 3 23 174 191 173 191 0.84 6 23 0.0011 0.11 15.0 0.8 1 23 197 219 197 219 0.97 7 23 0.0019 0.2 14.2 0.2 2 23 226 247 226 247 0.93 8 23 0.0014 0.15 14.6 0.7 1 23 253 275 253 275 0.98 9 23 4.2e-06 0.00043 22.6 2.1 1 23 281 303 281 303 0.97 10 23 0.0069 0.7 12.5 2.9 2 21 308 327 307 329 0.89 11 23 0.069 7 9.3 0.2 1 23 335 358 335 358 0.97 12 23 8.1e-05 0.0083 18.5 1.0 2 23 389 410 388 410 0.94 13 23 0.0047 0.48 13.0 1.3 3 23 418 438 416 438 0.96 14 23 0.0048 0.49 13.0 1.2 1 23 444 467 444 467 0.94 15 23 0.0002 0.021 17.3 1.0 1 23 473 495 473 495 0.98 16 23 6.4e-07 6.5e-05 25.2 0.7 1 23 501 523 501 523 0.98 17 23 5.6e-06 0.00057 22.2 0.2 2 23 528 549 527 549 0.97 18 23 5.2e-05 0.0052 19.2 0.8 2 23 556 577 556 577 0.97 19 23 3.5e-05 0.0035 19.7 2.3 1 23 584 606 584 606 0.96 20 23 4.6e-06 0.00047 22.5 1.3 1 23 612 634 612 634 0.99 21 23 1.5e-05 0.0015 20.8 0.1 1 23 640 662 640 662 0.98 22 23 0.00087 0.088 15.3 1.4 1 20 668 687 668 690 0.95 23 23 0.0078 0.8 12.3 0.3 1 23 698 720 698 720 0.97
Sequence Information
- Coding Sequence
- ATGCATTCACCAAAACAGTATCCAGTAACAGCGTTCGAGGATGACCGTCCCACGATTTCACCATACCCGTTCAGCCGATGCTATCTAATAGTCGCCGAATTGTTCTCTTTTTGTTCCAGCCACTCCGACGGCCAGCCGGATGGTGATGATGCCGATCTCAAAAATCCCACCAAATGCATCATTTGCGATCAACAGTTCCTTACGGGGTCCGATTTCAGGCGACACATGCGTACCCACAGCGAGGCAGCACCGTACGGTTGCGACATTTGCGGGAAATGCTTCTATCTTAAAACCGTGCTCGTTGAACACAGAAAAACGCATACCGACGAGCGCCCGCACAAATGTGACGTATGCGGTAAAAGTTTCAAAATAGTTCACGCTCTACGATATCACCGTTCAAAACATGTCACGGAACGTCCTTATGAATGTGACACTTGTGGTAAACAATATGCCCTCAAAGAGCAGCTCATCCGGCATGTACGTTGGCATACTCGTGAGATTCACGAGCGAACATCGCTTTGCGATGTATGCGGAAAAATCATAGCAAGCCTGGAAGTTCATATGAGAACTCATACTGGAGATAGGAAACACGAATGCGATGTTTGCGGCAAAAGATACACTTCACGCAACATTTTACTAGCACATGTGAAAACCCACACCGACGAACATACACCCAAATGCAACATATGCGGCAAAAGCTTCCCCACGGGTAGCTCGCTTTGGTTTCACCGGGCGGTACACGCGACGGAACGTCCATTCAAATGTGACACCTGTGGCAAACAGTTCGCCCTCGGTATACAGTTCAAGCGACATTTGATAAGTCATACCGAAGAACGCCAACATCGGTGCAGCATTTGCGATAGGGGCTATAAGAAAAAATCCGATCTCGTCCGACACATGCGTGGGCATGTGCAGCCTCTTCATTGCGACACCTGCGGAAGGCGTTTCGGAGATGAACGGCATTTGAAAAGACACTCCGGACTGCATACTGTCACTAGTACGTACACGTGTGCTGCCTGTGGTAGAGGGTATAGTTCGGTCAAAAGATTGGATAATCACGTGAGAATGTATCACACGGAGGGTAAAAGCTTCGAATGTGATGTGTGCGGAGCGAACCACTTCGACGGCGGCGGCGATGAAAGCGACGACCTCAACAAACCCACCAAATGCATCATTTGCAATCAACCGTTCACTACGGTGTCCGATTTCACGCGTCACATGCGTACCCACGCCGAAGCAGCACCCTACGGTTGTGACGTTTGCGGGAAATACTTTTACCACAAGACCGTGCTCACTGAACACCGGAAAGCGCATACCGACGAGCGGCCGCACAAATGTGACGCGTGCGGTAAAAGTTTCAAAATGATCCGATCGCTACGGTATCACACGGCGGTGGAACATGCGACTGAAAATCCCTTCAAGTGTGACACTTGTGGTAAAGAATTTCCAGTCTTTGTAAAATTCAACCGGCATCTGAAAATTCATAGCAACGAACGTCAGTATCGGTGCAGCATTTGCGATAAAGAGTACAAAACCAGTTCCGAACTCAGCAATCACATCCGTTGGCATGTGCGACCTTCCCGTTGTGAGATATGCGGAAAAAGCTTTCCCGATAATCGACGATTGATAAAGCATATGGCAGTTCATGTTGAAAATAACAAGAATACTTGTGACGTTTGTGGTAGATTTTGTAGAACAGCCAACAATTTGGCAGTTCACATGAGAGCCCACACTGATGGCGAACTTCCGCACAAATGTGATATATGTGGTAAAAGCTTCAACAAAAGCGGAACCCTACGGTACCACCGTGGGATGCATGCAACGGAACATCCCTTCCGATGTGACACTTGTGGCAAAGTATTTTCTCTCAGTGTACAGCTCAAGTACCATCTGAAAACTCACACCGTAGAACGTCAGTTTCGTTGCAGCATCTGTGACAAAGCGTTCATGGTTAATGCCCAACTTGTCATACACATGCGTGCTCATACCGATGAACGTCCGTTCAAGTGCGAAATCTGCGGTGCAGCGTTCCGAGCCAAGTACAGTCTTGAACGTCACAAAATCTGTCACTCAAACACAGTTGCCTCATCTTTCGAGTGTGCTGTATGCGGAGCAAAGTTCAGCATACGACGAAGCCTGAACTATCACAGTAAGGTGCACGCGGAGGAAACTTTCTCGTAA
- Protein Sequence
- MHSPKQYPVTAFEDDRPTISPYPFSRCYLIVAELFSFCSSHSDGQPDGDDADLKNPTKCIICDQQFLTGSDFRRHMRTHSEAAPYGCDICGKCFYLKTVLVEHRKTHTDERPHKCDVCGKSFKIVHALRYHRSKHVTERPYECDTCGKQYALKEQLIRHVRWHTREIHERTSLCDVCGKIIASLEVHMRTHTGDRKHECDVCGKRYTSRNILLAHVKTHTDEHTPKCNICGKSFPTGSSLWFHRAVHATERPFKCDTCGKQFALGIQFKRHLISHTEERQHRCSICDRGYKKKSDLVRHMRGHVQPLHCDTCGRRFGDERHLKRHSGLHTVTSTYTCAACGRGYSSVKRLDNHVRMYHTEGKSFECDVCGANHFDGGGDESDDLNKPTKCIICNQPFTTVSDFTRHMRTHAEAAPYGCDVCGKYFYHKTVLTEHRKAHTDERPHKCDACGKSFKMIRSLRYHTAVEHATENPFKCDTCGKEFPVFVKFNRHLKIHSNERQYRCSICDKEYKTSSELSNHIRWHVRPSRCEICGKSFPDNRRLIKHMAVHVENNKNTCDVCGRFCRTANNLAVHMRAHTDGELPHKCDICGKSFNKSGTLRYHRGMHATEHPFRCDTCGKVFSLSVQLKYHLKTHTVERQFRCSICDKAFMVNAQLVIHMRAHTDERPFKCEICGAAFRAKYSLERHKICHSNTVASSFECAVCGAKFSIRRSLNYHSKVHAEETFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -