Tyan065675.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058070.1:395550260-395552959[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.1e-05 0.0011 21.3 1.3 3 23 244 264 243 264 0.98 2 20 0.0067 0.68 12.5 4.1 2 23 272 293 271 293 0.97 3 20 1.5e-05 0.0015 20.9 0.6 1 23 299 321 299 321 0.98 4 20 2.9e-05 0.0029 20.0 2.9 1 23 327 349 327 349 0.98 5 20 2.7e-06 0.00028 23.2 1.0 1 23 355 377 355 377 0.98 6 20 1.4e-05 0.0014 20.9 0.3 1 23 383 405 383 405 0.99 7 20 0.0027 0.27 13.8 0.9 1 21 411 431 411 432 0.96 8 20 1.6e-05 0.0017 20.7 4.0 1 23 447 469 447 469 0.98 9 20 0.0017 0.17 14.4 0.8 2 23 476 497 475 497 0.96 10 20 3.1e-06 0.00031 23.0 5.8 1 23 503 525 503 525 0.98 11 20 5.2e-05 0.0053 19.2 0.6 1 20 531 550 531 553 0.93 12 20 2.7e-05 0.0028 20.0 1.0 2 23 560 581 559 581 0.95 13 20 3.3e-05 0.0033 19.8 0.8 2 23 588 609 587 609 0.97 14 20 2.9e-05 0.0029 20.0 2.1 1 23 615 637 615 637 0.97 15 20 0.0025 0.26 13.8 0.9 1 23 652 674 652 674 0.99 16 20 0.0003 0.03 16.8 1.4 1 23 678 700 678 700 0.96 17 20 8.1e-05 0.0083 18.5 1.3 1 23 706 728 706 728 0.98 18 20 8e-06 0.00082 21.7 1.0 1 23 734 756 734 756 0.98 19 20 8e-05 0.0081 18.6 3.0 3 23 764 784 763 784 0.97 20 20 0.00046 0.047 16.2 0.5 1 23 790 812 790 812 0.98
Sequence Information
- Coding Sequence
- ATGTCTGGTTGCCTAGCGCTACCGGATTGCTGCCGGTGTTGTCTGGAGGAGCAAAGCGACTCTTTCGATGTGTTCTCAACCTTGGAAGAGTTCAACAGCAAAATTCGTGACTTACTGGAGGACTGCAGTGGAATCACGatAAAAGATGAAGATTTTTTCCCGAAGAACATTTGCGGTACGTGTTTGGGTGATCTGTCCAACGCGGCCCGCTTTCGAATGCGATGTCTTAAATCTGAGGAGATTCTACGGAATATAAAAATTGACGACAAAGAATCCCGAAAGCATGCAAATGATCCAACAGCACCAGTCGAGCAGATTGATCGAGAAAACCAGCTTGTTTTGGGTGAGAATCAAAACTTGGAGTGTAGCGTGGACAATGAGAATACGGAGAACAGCGACATGGTCTATCTTTCCGATGAACCAGAGTTAGAAGCTGAACAATGTCCTCAGGAGAAAGAAACCATGGTGGTGACAGGTGAAGAACAGTCTGAGGTCGAACAGCCAAGCCAACCAACGGAAAACGAGGATTCCGAGAAAAAACTCAACTTAAACGAAGAAAAAGATGAAAAAGGCGAGTGTTCCCAGCAGCTTGAAATGAATGTTAATCAGTTCCTGAAAATAGAGGAAAAGTGTAACACCGAAGAAACTGCAGAATCTCAATTGAACGAATCAAAGATTAAATTGGATAACGATGATGGAGCTGGCGAAAACGTGGACCACACAGTTGCATGCAGTGTCTGCAGCAAAGAGTTCAAGAACAGCGATGAGCTACACCGGCATATCCGAGTACATTCAGAAGAAAAAATGGATCTGAAATGTTACATTTGCTGCAGGAGATTTAGTCTCAAAAGTGCCCTGATCAGACACAGGCGTACCCATGCCATTGAGCGTACACACCAATGTGGCGAGTGTGGCAAAAGCTTTGCTGCTAGATTTTCCTTAGTAAGACACATGATTAGCCACAGCAATGAACGACCGCACAAATGTGAGGTCTGCGGCAAAGCGTTTAATATGAAGAACACCCTAAAGAAGCACAGACTCATGCACACTGGTGAGCGGCCATTCAGCTGCGACATTTGTGGTAAAACCTTCACGACGTCTAGTGCCCGCATTAAACATAAGCGCATCCATACCGGGGAACGACCCTATGAGTGTAACATGTGCAGCAAAGCATTCATCTCTGGGAGTCAACTAAAGGTTCACGTCCGCATGCACACCGGCGATAGACCGTACAAGTGCGAGGTCTGCGGTAACGGGTTTACGGCTCAGCACTCGTTGAAGTACCACAGACGAAATCTTTGTGGCAAACCTGCAAAATCTCAGGATGGTGAGGGATCACATAAATGTGAAACCTGTGACAAAGAATtcccaaaaaaatttcttcttcaaAGACATATGCGCCAGCATGTGAACGATCTTCCGTTAAATTGCGGAACTTGTggcaaaacatttttgaagcgatCGGTTCTTCTGCGACATATACGTTCCCATAGCGGCGAACGGCCGCACAGATGTGACGTCTGTGGAAAAACATTCACTACGAAATGTGCCCTCAAAAGACATCGACGAGTTCATACTGGCGAGAGACCGCATAAATGTGACATCTGTGGCAAAGGATTCATCACCAAAAGTGAAGTGACGCGCCACAGACCAATCCACACGGGCGAGAGGCCTATAAAGTGTGATGTTTGTGGTAAAGGATTTATCACCAACAGTCATCTAAAGCTTCACAAGGTTAGTCACACGAAGCAGGGTGTGCTTGAATGTAGTGTCTGCGGAAAAAAGTTTGACCTTAGAAGAAATCTTATCAGGCACGAGCGAAGACACATCGCACCGCGATCGCACGAGTGCACAATGTGTAATAAGAAGTATATTACGAGAGGTCTTCTTAATCGGCACATGATCAGCCATACTAAACCGATGAAACGCGGACCGGTGGAAGAGAAAGGtcctttcaaatgcaacatttgcgaCACAGAGTTCGAGAAAGGAGTCCTCTACAGGCAGCATGTTCGGAAACATGAACTACCGCACAAGTGTGACCTTTGCGGCAAAGGTTTCACGATCCGAAGTCTTCTTCTACGGCACAGCCTGTCGCATACCGGCGAGAGACCGCACAAGTGTGACATTTGTGACAAAGCGTTCAGCACTACCTTCGCAGTGGCGAGACACAAGCGGGTGCACACCGGAGAACGACCCCACAAGTGTGACATTTGTGGCAAGGAGTTTATCACCGGTGGTCAGCTGAAGCAGCACCGGCGCATACACACTGGTGAACGACCGAATCATTGTGATATTTGCAACCGGGGGTTCATCAGCAGCTCGCTACTGAAACGGCACAAACGTTCGCACTGTGCGCAGCGTTTGCACGAGTGTAGCATCTGCGGCTCAGAGTACAATACCGCTATCGAGCTTGCGCGCCACAAGCGTACCCATACCGAAGAAAGTGACAGTGAGGGGTCGTAG
- Protein Sequence
- MSGCLALPDCCRCCLEEQSDSFDVFSTLEEFNSKIRDLLEDCSGITIKDEDFFPKNICGTCLGDLSNAARFRMRCLKSEEILRNIKIDDKESRKHANDPTAPVEQIDRENQLVLGENQNLECSVDNENTENSDMVYLSDEPELEAEQCPQEKETMVVTGEEQSEVEQPSQPTENEDSEKKLNLNEEKDEKGECSQQLEMNVNQFLKIEEKCNTEETAESQLNESKIKLDNDDGAGENVDHTVACSVCSKEFKNSDELHRHIRVHSEEKMDLKCYICCRRFSLKSALIRHRRTHAIERTHQCGECGKSFAARFSLVRHMISHSNERPHKCEVCGKAFNMKNTLKKHRLMHTGERPFSCDICGKTFTTSSARIKHKRIHTGERPYECNMCSKAFISGSQLKVHVRMHTGDRPYKCEVCGNGFTAQHSLKYHRRNLCGKPAKSQDGEGSHKCETCDKEFPKKFLLQRHMRQHVNDLPLNCGTCGKTFLKRSVLLRHIRSHSGERPHRCDVCGKTFTTKCALKRHRRVHTGERPHKCDICGKGFITKSEVTRHRPIHTGERPIKCDVCGKGFITNSHLKLHKVSHTKQGVLECSVCGKKFDLRRNLIRHERRHIAPRSHECTMCNKKYITRGLLNRHMISHTKPMKRGPVEEKGPFKCNICDTEFEKGVLYRQHVRKHELPHKCDLCGKGFTIRSLLLRHSLSHTGERPHKCDICDKAFSTTFAVARHKRVHTGERPHKCDICGKEFITGGQLKQHRRIHTGERPNHCDICNRGFISSSLLKRHKRSHCAQRLHECSICGSEYNTAIELARHKRTHTEESDSEGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -