Tyan014594.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Topomyia yanbarensis
Gene Symbol
-
Assembly
GCA_030247195.1
Location
CM058068.1:211685759-211688212[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 2.7e-07 2.8e-05 26.3 0.4 1 23 68 90 68 90 0.99
2 22 0.00039 0.04 16.4 0.7 1 23 96 118 96 118 0.98
3 22 4.8e-06 0.00048 22.4 2.8 1 23 124 146 124 146 0.99
4 22 5.9e-05 0.006 19.0 2.3 1 23 152 174 152 175 0.96
5 22 0.00024 0.024 17.1 0.3 2 23 182 203 181 203 0.98
6 22 3.8e-06 0.00039 22.7 0.4 1 23 209 231 209 231 0.98
7 22 0.0026 0.26 13.8 2.4 1 23 235 257 235 257 0.99
8 22 0.00081 0.082 15.4 0.7 1 23 272 294 272 294 0.98
9 22 0.0008 0.081 15.4 4.0 1 23 300 323 300 323 0.96
10 22 3.8e-05 0.0039 19.6 0.0 2 23 346 367 345 367 0.97
11 22 0.00011 0.011 18.2 2.5 1 23 373 395 373 395 0.99
12 22 1.8 1.9e+02 4.8 0.6 1 23 401 423 401 423 0.91
13 22 9.6e-07 9.8e-05 24.6 2.3 1 23 429 451 429 451 0.98
14 22 5.5e-06 0.00056 22.2 0.1 2 23 458 479 457 479 0.96
15 22 0.00012 0.012 18.0 1.4 1 23 485 507 485 507 0.99
16 22 0.059 6 9.5 7.0 1 23 513 535 513 535 0.97
17 22 0.00023 0.023 17.1 3.0 1 23 539 561 539 561 0.99
18 22 0.0011 0.11 15.0 1.2 1 23 575 597 575 597 0.99
19 22 0.00014 0.014 17.8 0.3 1 23 602 625 602 625 0.96
20 22 6.2e-05 0.0063 18.9 0.7 1 23 631 653 631 653 0.97
21 22 0.0013 0.13 14.8 1.2 1 23 659 682 659 682 0.97
22 22 3e-05 0.003 19.9 1.2 1 23 691 714 691 714 0.95

Sequence Information

Coding Sequence
ATGAATTCAGCTGGAGAAGATGCTCGCACGATGGATGAATTAGGCGAACAGTATATGCCTATTGTTGGCGAGATTAAAATCGAAAAAGCCGGCGATGTAGTACACTCGTCTCCAGAGCGTCCAGATACGGACCATGACGACAAAGGACAAATCGTACTTGAACAAATAGAGAATTTTAATGAGCACGAGGACGAGCCACTGTACACGTGTGAGGAATGTGGACAGGGATTTATTCGTGCAGAACATCTGACGTCTCACATGAGAGTTCATTCCAGTCAGCCTGTGTACAAGTGCGACATTTGCGGTAAGATCTGCGATTCACAGAGCTCCGTCGAACTGCACGGAAAGTCTCACATCGGTGAAGTTCCTTTCAAATGTGTTACTTGTGGTAAGAATTTCCGCAGTGCACACTACCTCAGGGTCCACCAGCGGATCCACACAGGGAAGGATCTGTTCAAGTGTGACATATGTGACAAAGAATTCGTTGTAAAGGAACACATTGAAAATCATATGATGAATCATCATTTcaaggaaaataaaaataaatgtgaTATTTGCGGTAAGGAATACGGGTCAAGTAACAGTCTATCCGCGCACCGTTCAACGCATACCAATAACAGGCTGTACAGATGTGAAATATGTGGAAAAGTGTACACTACGGAAACGAGCTTGATAAAACACAGCAAAGTGCACGACAACCCATACAAATGTGAGGTCTGTGGGACACAGTTCACTGAATGCTTGGCCATGAAGAGGCACAGGTTGACTCATTTCATTAAAACTGCTGACAAGCGGTCTTCTGCTGTGTCTCGTTACACATGTAATGTTTGTAACACCGAGTGTGCCGATGCTGTTTCTCTTAAAGAACACCGAAAAATACACCCCTTCGAAAATCCGTACGATTGTGATATCTGTAACAATCATTTCACGACCAGGATGAGCCTAAAAAAGCACATGTTTAAAATGCATCCGGACTTATCGGATCATAACACCAAGGACCAACTAGTTTTCAACGCAAGAAAACACCCACCGATCCAATGTGACGAGTGCGGGAAGAAATTCCGACAAATAGCAGACCTTGAGGTGCATGTACTAGTTCATTCCGGGCAAAGACCTTACAAGTGCGAAACATGCAACAAAGCTTTCGCAAGCCGAATTTGTCTAAAAACTCACGAGCGCATTCACACCGGCAAGCGGTGCTACTTGTGTGAAATCTGCGGCTTGTCCTGTGGTTCAAATATCGCTCGCGATATGCACCGAAAAAGTCACCTCGGGGAAGAACCGTTTAAATGTGATACCTGTGGTAAAAGCTACAGCAATCTCTACCAACTGAAGAGCCACCAGCGGCTTCACACGGGAAAGAACCTGATCAGTTGTGAGATATGTGGAAGGGTATTTGTTAGGAAAAGTCAGGTGGAACAGCACATGTTGAATCACACCAATGAGCATAAATACAAGTGCGACATTTGCGATAAGGGATGCGGTACCAGTCACGCACTGGCCGAGCATCGTCGAGTTCACACCGGTGAAAAACCACACAAATGTCAACTGTGTGGTAAAATGTACCGGAGTATGACCGGTTTCAGACATCACAGTAAAAAGCACAAGAATCCATTCAAGTGTGATATCTGTGGGACATTGTTCACCGAAAGCCACGCTATGAAGAGACACCGGAAGACGCATCCTAATTGGAAACGGTCTAAGAAATGTCCAGAACGTTACTACAAATGCGATATTTGTGAGGCCGAATTTTTCGACGCACGTTCTTTTAAAAATCACCGAAAATCTCACCCGAAAGACGAACACATATGTGACCTTTGCGGGAAGGAATTCCCGCTCAACGCCGGCCTTAAGAGACACCTGAAAAGTGTGCACTTCATTGACCTTCCCTATAAATGTAGCGAGTGTGAAATGGCTTTTGGGCGAAGCAAGGATTTGCGCAACCATATGTTTGAGCACAGCGATAAAAATTCGTTTCAATGTGAGTTTTGTGGTAATAAGTTTACGAAAGAAAGAGAGCTAAAGCTTCACAGAATCAGGGCGCATTCGGAGAAACTTAAGGGTCTACGGTTCAACTGTGACATTTGTGGGAAGAAGTTTTCCCAGGAGAGAGATTTGAGGATACACAAGACTAAGATGCATTCAGAAAAAGTTGAGGAAACAAGAGATGGAAATGTTGACGAGCTGATGTATGATCAACCGGTTCCAGGTGACTTAATTACCAAAAACGAACCGTCGCTGCAGATCGAAGACAATGGAACAGAACCAGAAGAAGGCTTTCCGCATTTCGCGCAGAAAGTCAAAGTATAA
Protein Sequence
MNSAGEDARTMDELGEQYMPIVGEIKIEKAGDVVHSSPERPDTDHDDKGQIVLEQIENFNEHEDEPLYTCEECGQGFIRAEHLTSHMRVHSSQPVYKCDICGKICDSQSSVELHGKSHIGEVPFKCVTCGKNFRSAHYLRVHQRIHTGKDLFKCDICDKEFVVKEHIENHMMNHHFKENKNKCDICGKEYGSSNSLSAHRSTHTNNRLYRCEICGKVYTTETSLIKHSKVHDNPYKCEVCGTQFTECLAMKRHRLTHFIKTADKRSSAVSRYTCNVCNTECADAVSLKEHRKIHPFENPYDCDICNNHFTTRMSLKKHMFKMHPDLSDHNTKDQLVFNARKHPPIQCDECGKKFRQIADLEVHVLVHSGQRPYKCETCNKAFASRICLKTHERIHTGKRCYLCEICGLSCGSNIARDMHRKSHLGEEPFKCDTCGKSYSNLYQLKSHQRLHTGKNLISCEICGRVFVRKSQVEQHMLNHTNEHKYKCDICDKGCGTSHALAEHRRVHTGEKPHKCQLCGKMYRSMTGFRHHSKKHKNPFKCDICGTLFTESHAMKRHRKTHPNWKRSKKCPERYYKCDICEAEFFDARSFKNHRKSHPKDEHICDLCGKEFPLNAGLKRHLKSVHFIDLPYKCSECEMAFGRSKDLRNHMFEHSDKNSFQCEFCGNKFTKERELKLHRIRAHSEKLKGLRFNCDICGKKFSQERDLRIHKTKMHSEKVEETRDGNVDELMYDQPVPGDLITKNEPSLQIEDNGTEPEEGFPHFAQKVKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-