Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:211968974-211975532[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.00087 0.089 15.3 5.4 1 23 152 174 152 174 0.98

2 24 4.3e-06 0.00044 22.6 0.3 1 23 180 202 180 202 0.98

3 24 0.001 0.1 15.1 2.6 1 23 208 230 208 230 0.97

4 24 0.00097 0.099 15.1 0.1 1 23 236 258 236 258 0.98

5 24 0.00014 0.014 17.8 2.6 1 23 296 318 296 318 0.97

6 24 0.0024 0.25 13.9 1.1 1 23 324 346 324 346 0.96

7 24 3.1e-07 3.1e-05 26.2 1.7 1 23 352 374 352 374 0.98

8 24 8.1e-05 0.0082 18.5 0.1 1 23 380 402 380 402 0.97

9 24 0.00093 0.095 15.2 0.9 1 23 408 430 408 430 0.98

10 24 0.00026 0.026 17.0 0.4 1 23 436 458 436 458 0.98

11 24 0.00036 0.037 16.5 3.6 1 23 464 486 464 486 0.98

12 24 0.00011 0.012 18.1 0.7 3 23 535 555 533 555 0.98

13 24 0.0026 0.26 13.8 2.8 1 23 561 583 561 583 0.93

14 24 0.0001 0.01 18.3 0.9 1 20 589 608 589 611 0.93

15 24 0.33 33 7.2 1.6 2 23 618 639 617 639 0.95

16 24 6.5e-05 0.0066 18.8 0.9 1 23 684 706 684 706 0.97

17 24 2.6e-05 0.0026 20.1 0.1 2 23 714 735 714 735 0.97

18 24 2.4e-05 0.0024 20.2 2.9 1 23 741 763 741 763 0.99

19 24 0.0003 0.031 16.7 3.1 1 23 769 791 769 791 0.98

20 24 4.6e-06 0.00047 22.5 1.0 1 23 797 819 797 819 0.99

21 24 0.0026 0.27 13.8 1.7 1 23 825 847 825 847 0.95

22 24 2e-05 0.002 20.5 2.7 1 23 853 875 853 875 0.99

23 24 0.00013 0.014 17.9 0.7 1 23 881 903 881 903 0.99

24 24 0.66 67 6.2 2.0 2 23 910 931 909 931 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.00087	0.089	15.3	5.4	1	23	152	174	152	174	0.98
2	24	4.3e-06	0.00044	22.6	0.3	1	23	180	202	180	202	0.98
3	24	0.001	0.1	15.1	2.6	1	23	208	230	208	230	0.97
4	24	0.00097	0.099	15.1	0.1	1	23	236	258	236	258	0.98
5	24	0.00014	0.014	17.8	2.6	1	23	296	318	296	318	0.97
6	24	0.0024	0.25	13.9	1.1	1	23	324	346	324	346	0.96
7	24	3.1e-07	3.1e-05	26.2	1.7	1	23	352	374	352	374	0.98
8	24	8.1e-05	0.0082	18.5	0.1	1	23	380	402	380	402	0.97
9	24	0.00093	0.095	15.2	0.9	1	23	408	430	408	430	0.98
10	24	0.00026	0.026	17.0	0.4	1	23	436	458	436	458	0.98
11	24	0.00036	0.037	16.5	3.6	1	23	464	486	464	486	0.98
12	24	0.00011	0.012	18.1	0.7	3	23	535	555	533	555	0.98
13	24	0.0026	0.26	13.8	2.8	1	23	561	583	561	583	0.93
14	24	0.0001	0.01	18.3	0.9	1	20	589	608	589	611	0.93
15	24	0.33	33	7.2	1.6	2	23	618	639	617	639	0.95
16	24	6.5e-05	0.0066	18.8	0.9	1	23	684	706	684	706	0.97
17	24	2.6e-05	0.0026	20.1	0.1	2	23	714	735	714	735	0.97
18	24	2.4e-05	0.0024	20.2	2.9	1	23	741	763	741	763	0.99
19	24	0.0003	0.031	16.7	3.1	1	23	769	791	769	791	0.98
20	24	4.6e-06	0.00047	22.5	1.0	1	23	797	819	797	819	0.99
21	24	0.0026	0.27	13.8	1.7	1	23	825	847	825	847	0.95
22	24	2e-05	0.002	20.5	2.7	1	23	853	875	853	875	0.99
23	24	0.00013	0.014	17.9	0.7	1	23	881	903	881	903	0.99
24	24	0.66	67	6.2	2.0	2	23	910	931	909	931	0.93

Sequence Information

Coding Sequence: ATGCTGGAGTTTTCTACCATCAGTAGCAGTGCGAATGGTCAAAAGAAGCATTTTGACAGATCGGTTAATCCAGCCAACTCTTCTGAGACCGCAGCGCTGTACAAGCGGCAACGGTGGTACAAAGCCGCTGTATTCAAACGTTTCAAAACATTCAGTGATATGGATGAGCTGCGACAGATTCAGCTGGAGGCTAAAGATTTTAATCCTTTGTGTACTAGTAATTCTACatacaaaaacgaaaacactcaGCAAGACGATGTCATTTCAAATAAATTCACCAATATTGAAAAGCAAAATTTTGATCCATCAAATGCGATACATCGAAGTTCCCAGCTCAGAGCAGTAATCGAACCCAACATTGAATTCGAGCAAAGCGACAGGCAGAATATTGGCAAATCCCCCAACAGCCTGCCGCTAGCATCCCCCATCCCGACAACCGATCTCACACGGCGACACCAATGCAAACTTTGTGGCAAACAATTCCTCCATAAGACTAACCTGAACGAACACGTCAGAACACATAACGGCGAACGGCCCTTCACTTGCGATGTCTGTGGTAAGACCTTCCCTAGGAGTGCTGGTCTATGGCAACATCGGTACACTCACACTGGTGAACGGCCGCACAAATGCACCGTATGCGATAAAGATTTTATGCTTAAAGCTCATCTATCGGCACACATGTCTCTTCATACCGGTGAGTATCGGTACAGGTGCGATGTGTGTGGCAAAGGATTCAATGCTGCTATTCGATTGAAGGAACACATGTACATTCATAGcgaaaaaaatcaaattaccaGCAACGAACAGGACGACGAACACAACAGTGGAATACCATGTAACAGCCTCACAACATCTTCCATCCCGACCATTGATTCCAGACGGCCACACAAGTGCGAGCTCTGTGGAAAACGATTTATCATGAAGCAACACCTTACCGCACACGTCCAGGCACATCGAGCTGAACGGCTCTTCAGTTGCGATGATTGCGGCAAGACATTTCTCAGACGTGGTGACGTTTCTAAGCATCGGTATTCACACACCGGCGAGAGACCGTATAAGTGTACAGTGTGCGGTAAAGGTTTCACACACAAAACTAACCTAAAGGCCCACATACTGCTTCATACGGGTGAGCGAGCGTACATGTGCACCGTGTGCGGCAAAGATTTCGTAGTTAAAAATGCTCTGATCACGCATATGTCCCTCCACACGGGTGAGTATCGCTACAAATGCGAAGCGTGTGGCAAAGGGTACAATAGCAAATATCGCCTAAAGGAGCATAACCGCATTCATACCGGCGAGCGACCGCACAAGTGTGCTATTTGTGGCAAAGATTTTGCTACTTGGAATCAAATAGGGGCTCACAAACGTACTCACATGGACGGGCGATCGCACCAATGTGATATTTGTGGAAGGAAATTTGTCGTGTATAGCGCATTCGTTCATCACAAACGCACCCACGAAGGCATCTACTGCTTCGAATGTAACTTTACTAACGACCCCGATATTTTCAGCGATAATAAGCAGATATCGTACCGCACGCAGGACGATGTTCGGAAGAATGCATTTTCCATCCCAACAATCGATGTCACCAATCCATACGGATGCAAGCTTTGCGAAAAACGATTCCCTGCCAAAAAGAACCTCAACGAACACATGCAGACTCATCCCGGCAAACGACCATTCTGTTGCGATATCTGCGGAAAGACATTTGCCAGACGAAGCGATGGTACTAAACATCGGTATTTACACACCGGAGAGCGGTCGTTCAAGTGTAAAGTTTGCAGTAAAGGCTTcataactaaatatatgctaCTTAAACATATGCCTGTTCATACGGGTGACTATCGGCAGACGTGCGATGTGTGCGGTAAAGGATTCGATTGCGTTTCCCGCATGGAGCGACACAAGCGCATTCATAGTGGCGATCACCCTTACAGcaataaaaaatcgaaaattaacCAAGCAAAATGCGACGTGCAGAGCAATGGAAATACATTCAACAGCTCGAAGCGAGCCGCTTCCATCGAAACCGTAGATTCTAGGCGACTCCATGAATGCGAACTTTGCGGCAAACGATACGTCGAGAAGTACTACCTCGTCAAACATATCCGTGCACATCGCGGTGAATTTACTTTTGGCGAATGCGACGTGTGTGGCCAAGGATTCATGAGTAAAGCTACTCTAACGGCGCACATGCGCATTCACAGCGGTGAAAGGCCATTCAAGTGCGATATCTGCGGTAAGACATTCATCAGAAGCTGTGCCGCTTCTCGCCATCGGCGTACACACACCGGCGAACATCCCCACAAGTGTGATATTTGTGGGAAAGGATTCGATTATACTACCTTTTTGAAGATCCATAAGCGTACTCATACCGGCGAGCGACCGTACACGTGTGATATCTGCGGGAAAGGATTCGCTGCAAAACATAAACTAACTATTCACCTACGTACTCACACAGACACACAACCGCATCGGTGTGATATTTGTGGAAAACAATTCAACGATAATTACTTATTCGGCCTACACAAAGGAACGCACAAGGGCATCTACCCCTTCAAGTGTGACATTTGTGACAAAGGATTCCTGCAGAAGTCTCATTTCACAGAGCACATGCGCGTTCACAGTGGCGAGAGGCCGTTCAAGTGCGATATATGCGGACAGGATTTTGTGATGTCCCGAGTACTTAATCGGCATAGGCGTTCTCATGGTGCCGAGCAGTCTTGTAGTTGTGAAATTTGCAACCAACGATTCCTCACTCAGCAGGAACTGGACACGCATACGAGTGAACATGTCGATTTCGCGGAGGCAGAGGAAAGTTGGTGGCTGAGCAAACGAAAGCGAAAAGTCGGTGTGTTCCCATACAATTTGGACGAAGCAATTGAATGA
Protein Sequence: MLEFSTISSSANGQKKHFDRSVNPANSSETAALYKRQRWYKAAVFKRFKTFSDMDELRQIQLEAKDFNPLCTSNSTYKNENTQQDDVISNKFTNIEKQNFDPSNAIHRSSQLRAVIEPNIEFEQSDRQNIGKSPNSLPLASPIPTTDLTRRHQCKLCGKQFLHKTNLNEHVRTHNGERPFTCDVCGKTFPRSAGLWQHRYTHTGERPHKCTVCDKDFMLKAHLSAHMSLHTGEYRYRCDVCGKGFNAAIRLKEHMYIHSEKNQITSNEQDDEHNSGIPCNSLTTSSIPTIDSRRPHKCELCGKRFIMKQHLTAHVQAHRAERLFSCDDCGKTFLRRGDVSKHRYSHTGERPYKCTVCGKGFTHKTNLKAHILLHTGERAYMCTVCGKDFVVKNALITHMSLHTGEYRYKCEACGKGYNSKYRLKEHNRIHTGERPHKCAICGKDFATWNQIGAHKRTHMDGRSHQCDICGRKFVVYSAFVHHKRTHEGIYCFECNFTNDPDIFSDNKQISYRTQDDVRKNAFSIPTIDVTNPYGCKLCEKRFPAKKNLNEHMQTHPGKRPFCCDICGKTFARRSDGTKHRYLHTGERSFKCKVCSKGFITKYMLLKHMPVHTGDYRQTCDVCGKGFDCVSRMERHKRIHSGDHPYSNKKSKINQAKCDVQSNGNTFNSSKRAASIETVDSRRLHECELCGKRYVEKYYLVKHIRAHRGEFTFGECDVCGQGFMSKATLTAHMRIHSGERPFKCDICGKTFIRSCAASRHRRTHTGEHPHKCDICGKGFDYTTFLKIHKRTHTGERPYTCDICGKGFAAKHKLTIHLRTHTDTQPHRCDICGKQFNDNYLFGLHKGTHKGIYPFKCDICDKGFLQKSHFTEHMRVHSGERPFKCDICGQDFVMSRVLNRHRRSHGAEQSCSCEICNQRFLTQQELDTHTSEHVDFAEAEESWWLSKRKRKVGVFPYNLDEAIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -