Tyan039700.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058069.1:422682005-422684919[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.022 2.2 10.9 0.1 6 20 2 16 1 19 0.91 2 21 3.1e-06 0.00031 23.0 0.2 1 23 25 47 25 47 0.97 3 21 9.1e-05 0.0093 18.4 2.3 1 23 53 75 53 75 0.98 4 21 2.4e-06 0.00024 23.4 0.1 1 23 81 103 81 103 0.97 5 21 0.14 14 8.4 11.2 1 23 109 132 109 132 0.96 6 21 5e-06 0.00051 22.3 0.9 1 23 246 268 246 268 0.98 7 21 7.3e-06 0.00074 21.8 0.1 1 23 274 296 274 296 0.96 8 21 0.0014 0.14 14.7 4.2 1 23 302 324 302 324 0.96 9 21 7.9e-07 8e-05 24.9 0.9 1 23 330 352 330 352 0.97 10 21 0.048 4.8 9.8 9.0 1 23 358 381 358 381 0.95 11 21 4e-05 0.0041 19.5 2.8 1 23 500 522 500 522 0.97 12 21 9.9e-06 0.001 21.4 0.2 1 23 528 550 528 550 0.96 13 21 0.00039 0.04 16.4 2.6 1 23 556 578 556 578 0.96 14 21 3.3e-07 3.4e-05 26.1 0.1 1 23 584 606 584 606 0.98 15 21 0.0033 0.33 13.5 6.6 1 23 612 634 612 634 0.97 16 21 5.1e-05 0.0052 19.2 0.9 1 23 738 760 738 760 0.93 17 21 0.00027 0.027 16.9 0.3 1 23 766 788 766 788 0.96 18 21 0.00016 0.017 17.6 0.4 1 23 794 816 794 816 0.97 19 21 1.1e-06 0.00011 24.4 0.7 1 23 822 844 822 844 0.97 20 21 0.015 1.5 11.4 7.6 1 23 850 872 850 872 0.97 21 21 1.2e-05 0.0012 21.2 4.0 1 23 878 900 878 900 0.98
Sequence Information
- Coding Sequence
- ATGTGCGGCAAAGAATTCTTTCAGAAGCAGTCTCTGCAGCGGCACATTCCTATTCACACTTGCGAGCGACCGTATGCGTGTGACATATGTGGCAAAGTATTTCCCCGGCGGGATTACTTGACCTCGCATAAACTCGTTCACAGTAGTGAACGACCCCATAAGTGCGAGGTGTGTGGGAAAACATTTTCGCTGAAACGGCGCTTGCAGCAGCACGTTAACATCCACACTGGCGAGCGGCCTTATAAATGTGAAATATGTGGCAAAGCATTCATCCAGCAGGGTAACTTGATATTGCACCGAGTCATTCACAGTGGTTTACGGTCGCATAAATGCAAGATGTGTGGCAAAGGATTCCTTCATAAGCATCACTTGCAAAAACACGTTATTAGCTGTCACACTGGTGAGCAGGCCAATAAATATACATCCACGGAAACTATTGTATGCGAACCCACGATCGCATCAATCGGGTACGACTCGTTCATATCCGATAAGGTCTGTGTTAGTAAACCTGAGTATCAAAGAGCAAGTGTGACAGAGGTTCCAAAATACGAACAGGCAAAGTCGGTTGATGACCATAATATCAACAACTCAACCCAAATCGGTGCTATCAACAATTCTGACCTTGATGGCATTGGCAGCGATCATCAAACAACGCCAGAGTCACAAACGAAGATTGGAAATCAGACAGACATGCCTTTGAAGGCACGCAAGCGATCCTACTGTGGAAATCGACTGTTCTATTGTGATGTATGTGGCAAAGAATTTTTCCAGAAGCAGTCGCTGCAGCGACACATTTCCGTTCACACTGGCGAGCGACCGTTCGCATGCGAAATTTGTGGCAAAGTATTCCCGCGGCGGGATTACCTAATCTCGCACAAACTAATACACAGTAGTGAACGGCCCCACAAATGCGAGGTGTGTGGCAAAACATTCACGCTGAAGCGGCGCCTGCAGCATCACGCTACCATCCACACTGGCGAGCGGCCTCATAAATGCGAGATATGTGGCAAAACATTTATCCAGCAGGGTAACTTGACATTGCACCGACTCATTCACATTGGTTTACGGTCGCATACGTGCGAGATATGTGGCAAAGGATTCCTTCATAAGCATCACTTGCAGAAACACGTTGCCAGCTGTCACACTGAGGACCAGTCTAATAAATGCGAACCCACGGAAACTATTGTATGCGAACCCACGATTCCATCGAATGGGTTCGACTCGTTAATGTTATCCGATAAGCATTGCGCTAGTAAACCTGAGTATCAACCAACAAATGTGAAGATAGAGTCTCCGACGTACGAACAGGGATATTCAGCTAATGACCATGATATCAACAACTCAACCCTGCCTGATAATATCTACAATGCCAACTATGATAGCATTGGTACTAGCAGCGATCTTCCAACAGTACCAGAGACACAATCCACAGAGCTTGGAGATCAGACAGACATGTCTGTGAAGCAACCCAAACGACCCTACTGTGGAAATCGACGGTTCTGCTGTGAGGTTTGTGGTAAAGAATTCTTCCAGAAGCAGTCCCTCCAACGACACATTCTCAATCACACAGGCGAGCGACCGTTTGCATGCGAAATATGTGGCAAAATATTCCCCCGGCGGGATTACTTAACAACGCACAAACTAGTACACAGTAGTGAACGACCCCACAAGTGCGAGGTGTGTGGCAAAACATTCTCGTTGAAGCAGCGTCTGCAGAAACATTTTGCCATCCATACTAGCGAGCGGCCCTTCGAATGTGAGATATGTGGCAAAGCATTTATCCAGCAGGGTAACTTGACATTGCACCTACTCACTCACAGTGGTTTACGGTCGCATAAGTGCGAGATATGTGGCAAAGCATTTCTTCATAAGCATCACTTGCAGCAACACGTTGCCTCGCACATTGCTGTGCAGTCTAATGAATGTGAATCCGCAGAAACTATTGTATGTGAACCCACGATGCAACCAAACGGGTTCGGCTGTGATAGTGAACTTGAACATCAGCGGACAAGTGTGAAGATAGTGTCTTCGAAGTACGAACAGGCTGACAATCATGACATCAACAACGCCACCCTGATCGATAACAGCTACAGCACTAACTTTGAAAGCATTGGGAGCCACGGCGATCTGCCACCAATGCCAGAGTCACAATCGAAGCTCGAGGATCCGACAAACATGTCTATGAAGCAACCCTATTGTAAAAATCAATTGTTCTACTGTGATGTAtgtggcaaagaattcttccAGAAGCAGTCCCTCCAGCGGCACATTCCCACTCACACTGGCGAGCGACCATTTGCATGCGAAATATGTGGCAAAGTATTCCTGCGGCGAGATTACTTAACCTCGCACAAACTAATTCACAGCAGTGAACGACCTTATAAATGCGAGGTGTGTGGCAAAGCGTTCTCGCTGAAGCAGCGCCTGCAGCAACACGCCACCATCCATAGTGGCGAGCGGCCTCATAAATGTGAAATATGTGGCAAAGCATTTGTACAGCAGGGTAACTTAACCACTCACAAACTCATTCACAATCTTTTACGGCCGCATAAGTGCGAGGAATGTGGAAAAGAATTCCTTCATAAGCATCACTTGCAGCAACACGTTACCATCCACACTGGCGAGCGGCCATATAAGTGCAGCATATGTGGCAAAGCATTCACCCATCAGGGCTACTTGAACTCACACAAACATATTCACAGTAAGTGA
- Protein Sequence
- MCGKEFFQKQSLQRHIPIHTCERPYACDICGKVFPRRDYLTSHKLVHSSERPHKCEVCGKTFSLKRRLQQHVNIHTGERPYKCEICGKAFIQQGNLILHRVIHSGLRSHKCKMCGKGFLHKHHLQKHVISCHTGEQANKYTSTETIVCEPTIASIGYDSFISDKVCVSKPEYQRASVTEVPKYEQAKSVDDHNINNSTQIGAINNSDLDGIGSDHQTTPESQTKIGNQTDMPLKARKRSYCGNRLFYCDVCGKEFFQKQSLQRHISVHTGERPFACEICGKVFPRRDYLISHKLIHSSERPHKCEVCGKTFTLKRRLQHHATIHTGERPHKCEICGKTFIQQGNLTLHRLIHIGLRSHTCEICGKGFLHKHHLQKHVASCHTEDQSNKCEPTETIVCEPTIPSNGFDSLMLSDKHCASKPEYQPTNVKIESPTYEQGYSANDHDINNSTLPDNIYNANYDSIGTSSDLPTVPETQSTELGDQTDMSVKQPKRPYCGNRRFCCEVCGKEFFQKQSLQRHILNHTGERPFACEICGKIFPRRDYLTTHKLVHSSERPHKCEVCGKTFSLKQRLQKHFAIHTSERPFECEICGKAFIQQGNLTLHLLTHSGLRSHKCEICGKAFLHKHHLQQHVASHIAVQSNECESAETIVCEPTMQPNGFGCDSELEHQRTSVKIVSSKYEQADNHDINNATLIDNSYSTNFESIGSHGDLPPMPESQSKLEDPTNMSMKQPYCKNQLFYCDVCGKEFFQKQSLQRHIPTHTGERPFACEICGKVFLRRDYLTSHKLIHSSERPYKCEVCGKAFSLKQRLQQHATIHSGERPHKCEICGKAFVQQGNLTTHKLIHNLLRPHKCEECGKEFLHKHHLQQHVTIHTGERPYKCSICGKAFTHQGYLNSHKHIHSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -