Tyan040416.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Topomyia yanbarensis
Gene Symbol
-
Assembly
GCA_030247195.1
Location
CM058069.1:431796550-431799244[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 4e-06 0.0004 22.7 1.6 1 23 91 113 91 113 0.98
2 20 0.00041 0.042 16.3 3.9 1 23 119 141 119 141 0.97
3 20 9.4e-05 0.0095 18.3 0.2 1 23 147 169 147 169 0.97
4 20 0.0011 0.12 14.9 1.1 1 23 175 197 175 197 0.98
5 20 0.00092 0.094 15.2 4.2 1 23 203 225 203 225 0.98
6 20 4.5e-05 0.0045 19.4 0.7 1 23 230 252 230 252 0.96
7 20 0.0013 0.13 14.7 0.7 1 23 258 280 258 280 0.97
8 20 1.7e-05 0.0017 20.7 5.6 1 23 286 308 286 308 0.98
9 20 4e-05 0.0041 19.5 0.1 1 23 314 336 314 336 0.98
10 20 1.1e-05 0.0011 21.3 2.6 1 23 342 364 342 364 0.98
11 20 4.6e-06 0.00047 22.5 1.5 1 23 370 392 370 392 0.98
12 20 0.002 0.2 14.2 1.3 1 23 398 420 398 420 0.99
13 20 7.5e-07 7.6e-05 24.9 0.8 1 23 426 448 426 448 0.99
14 20 0.00011 0.011 18.2 0.4 1 23 454 476 454 476 0.96
15 20 7.7e-08 7.8e-06 28.1 1.0 1 23 482 504 482 504 0.99
16 20 1.7e-06 0.00017 23.8 0.4 1 23 510 532 510 532 0.99
17 20 2.1e-05 0.0021 20.4 7.2 1 23 538 560 538 560 0.98
18 20 0.00033 0.034 16.6 2.2 1 23 566 588 566 588 0.98
19 20 1.4e-07 1.4e-05 27.3 0.5 1 23 594 616 594 616 0.99
20 20 0.00043 0.044 16.3 0.8 2 23 623 644 622 644 0.97

Sequence Information

Coding Sequence
ATGTCAAGTAACGCTAAAGAACAACCTGATCAATCGCTCAATGTAGATATCAAAAAAGAGAAAGATGAAGTACAGCTACATGCGATGGGAATTACTGCCGTAAAGGAGGAGGCCAACTTCTACCTAGATAACTCAAAGGAGAACCAAGTTgaagaaaagtttaaaaatctacCAGGAGATTTTGAGTGTCCTGCGCTTCTGCAAACCCAGTCATATCCTTTAACAGATGGTACACATCCCGATGGGTTTCAATCATCCGAGGATCGTCCCCACAAGTGTGACATTTGTGACAAAAGCTTCGCTAAGATGTACCAGCTGACTGGTCACATGCGTATTCACACTGGCGAACGGAAGCATGAATGTGACATATGCGGTAAGCGCTTTTTGACCAGCAATCACCTAACCAGTCATAGACGCTGGCACACCGGTGAAAAACCGTTTGAGTGTGAAACCTGTGGAAAACGGTTCCCTCAGCGCGAAGCTCTCGCGTATCACAAAAGTATTCACAATACTGAACGTACGCACAAATGTGATATTTGTGGTAAATTTTATCTTCGCAAGCGGGATCTCATCGTTCATGGTCGTATCCATAGCGCGGAAAACCCGTACAAATGCGAGATTTGCAAAAAAGAATTCAAACATCATAATAGTCTTGCGTATCATGTGAGTATTCACAGCGAACCATCATTCAAGTGCGAGGTCTGTGGTAAAGGTTTTCGAAGGGAAAAAGAATTGTTGTCCCACAGCACGATGCATTTACAGGAAAAATCGTACATATGCACCATATGTGGCAAAGGATTTCATGACGATAAACGTCTTGCTCGGCACACGCTTATCCATAATGACAACAAACCACATAAATGTGAACACTGTTCTAGAGTGTTTCGAACCAAAGTAGAGCTAACGAAACATACTCGTGTTCATACTGGCGAAGAGCCGTTCCCTTGTGACGTTTGTGGCAAAGGATTCAAAGATGCAGGTTACCGAGCACTACACATGCGGATGCATACCGGGGAAAAGCCACATGAGTGTACACTTTGTGATAAAAGGTTCTATTCCAGTAGCGGGCTGTCAATGCACATGCGGAGCCACATCAGCGAAAGAGATCATAAATGTGACGTTTGCGGTAAAGGATTCCAAACACCCAGCCATCTTGCTCAGCACGAGCGCATTCATACGGACGAGCGCCCATTCAAATGTGAAATTTGCGGTTTAGAAACGGCGCAAAGTAGTTACCACGCTCGCCATATGCGCCGCCATGCCAAAGGCCGAGCTTACAAATGCGATGTTTGTGACAAAGGATTTATGACTCAAAGTTACCTGAATCTGCACATGCGTTTGCACACTGGGGAACGACCGCACGCTTGCGATGTCTGTGGGAAAGGATTTACTGGGGTTTCGCTTCTCAACCAGCACAAACGCATTCATGTTGAGGATCGTCCCTTCAAATGTGACATTTGCGATAAAGGGTTCATCAGCACAAGTAACCTTAAAAAACACATACGTTCCCACACGGGCGAACGGCCGTACAAGTGTGAAATTTGCCTGAAAGCATACAGCTCAAGTAGTGCTCTAACACAGCACATACGCAGCCATACCGGTGAACGGCGGCATAAATGCGACGAATGCGGGAAAGAATTCTTCAGGAAGGGACACCTCCAACATCACAGACGGGTTCATACCGATGAACGACCGCACAAGTGTGACATTTGCGATCGAGGATTCTTCGAGGCGCACGAACTTATCGTCCACAAGCGCACCCATACGGGGGAACGACCGTTCAAATGTGACATCTGTGGCAAAGCGTACACGAGAAGTAGCGAGCTTAATGTTCACAAGCGTATTCATACCTATGGAAAGCTGAGCAAATGCCCGACCTGCGGAAAGGAGTTCCTACAAAGCGAACATCTAGCAGTGCATCAGAAGGAACACGAGCAGCAGAGCGAAGGACTGGTGTGCACGCTGGAGACGGAAATTAGCGTTAAAAGGGAAGATGAGGAAATCTACGGGTTATCAGCCACAGCAGGTGACCAGCGCAAGATCAACGGCAAGGGCGATCCGAAATCAACTGTTGCCGTGGACGTTGAGTGCCGGACCGACAGCAAGTTCGACGAAAATCCACTGCCACAAATTAATGTACACGAGGTGTGGCAGGGCGCTGAAGTTCTAGCACAGAAGTTGATGTTGCTAATACAGTTAGTGCTCAACCTTCGAGTCAAGTCGAGCAGACGCGTTTAG
Protein Sequence
MSSNAKEQPDQSLNVDIKKEKDEVQLHAMGITAVKEEANFYLDNSKENQVEEKFKNLPGDFECPALLQTQSYPLTDGTHPDGFQSSEDRPHKCDICDKSFAKMYQLTGHMRIHTGERKHECDICGKRFLTSNHLTSHRRWHTGEKPFECETCGKRFPQREALAYHKSIHNTERTHKCDICGKFYLRKRDLIVHGRIHSAENPYKCEICKKEFKHHNSLAYHVSIHSEPSFKCEVCGKGFRREKELLSHSTMHLQEKSYICTICGKGFHDDKRLARHTLIHNDNKPHKCEHCSRVFRTKVELTKHTRVHTGEEPFPCDVCGKGFKDAGYRALHMRMHTGEKPHECTLCDKRFYSSSGLSMHMRSHISERDHKCDVCGKGFQTPSHLAQHERIHTDERPFKCEICGLETAQSSYHARHMRRHAKGRAYKCDVCDKGFMTQSYLNLHMRLHTGERPHACDVCGKGFTGVSLLNQHKRIHVEDRPFKCDICDKGFISTSNLKKHIRSHTGERPYKCEICLKAYSSSSALTQHIRSHTGERRHKCDECGKEFFRKGHLQHHRRVHTDERPHKCDICDRGFFEAHELIVHKRTHTGERPFKCDICGKAYTRSSELNVHKRIHTYGKLSKCPTCGKEFLQSEHLAVHQKEHEQQSEGLVCTLETEISVKREDEEIYGLSATAGDQRKINGKGDPKSTVAVDVECRTDSKFDENPLPQINVHEVWQGAEVLAQKLMLLIQLVLNLRVKSSRRV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00948977;
90% Identity
-
80% Identity
-