Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:211939836-211945405[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 1e-06 0.0001 24.5 0.9 1 23 111 133 111 133 0.98

2 21 0.0013 0.14 14.7 4.0 1 23 137 159 137 159 0.98

3 21 2.7e-05 0.0028 20.0 1.2 1 23 164 186 164 186 0.95

4 21 5.5e-05 0.0056 19.1 2.1 1 23 192 214 192 214 0.95

5 21 2.2e-05 0.0022 20.3 0.6 1 23 220 242 220 242 0.97

6 21 8.7e-06 0.00089 21.6 5.9 1 23 248 270 248 270 0.98

7 21 6.4e-05 0.0065 18.9 0.3 1 23 305 327 305 327 0.96

8 21 7.4e-07 7.5e-05 25.0 1.5 1 23 333 355 333 355 0.98

9 21 2.9e-07 3e-05 26.2 1.0 1 23 361 383 361 383 0.98

10 21 9.8e-05 0.01 18.3 3.8 1 23 389 411 389 411 0.96

11 21 0.0041 0.42 13.2 4.3 2 20 418 436 417 439 0.92

12 21 1.9e-05 0.0019 20.6 0.5 2 23 446 467 446 467 0.97

13 21 0.00028 0.029 16.8 2.2 1 23 473 495 473 495 0.98

14 21 0.0056 0.57 12.8 3.6 1 20 501 520 501 523 0.94

15 21 4.1e-05 0.0042 19.5 3.9 1 23 529 551 529 551 0.98

16 21 2.8e-05 0.0029 20.0 1.3 1 23 557 579 557 579 0.98

17 21 2e-05 0.002 20.5 4.9 1 23 585 607 585 607 0.99

18 21 4.8e-06 0.00049 22.4 0.4 1 23 613 635 613 635 0.98

19 21 2.6e-07 2.6e-05 26.4 0.4 1 23 641 663 641 663 0.99

20 21 0.00012 0.012 18.0 4.9 1 23 669 691 669 691 0.99

21 21 1.4e-05 0.0014 21.0 0.2 1 20 697 716 697 718 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	1e-06	0.0001	24.5	0.9	1	23	111	133	111	133	0.98
2	21	0.0013	0.14	14.7	4.0	1	23	137	159	137	159	0.98
3	21	2.7e-05	0.0028	20.0	1.2	1	23	164	186	164	186	0.95
4	21	5.5e-05	0.0056	19.1	2.1	1	23	192	214	192	214	0.95
5	21	2.2e-05	0.0022	20.3	0.6	1	23	220	242	220	242	0.97
6	21	8.7e-06	0.00089	21.6	5.9	1	23	248	270	248	270	0.98
7	21	6.4e-05	0.0065	18.9	0.3	1	23	305	327	305	327	0.96
8	21	7.4e-07	7.5e-05	25.0	1.5	1	23	333	355	333	355	0.98
9	21	2.9e-07	3e-05	26.2	1.0	1	23	361	383	361	383	0.98
10	21	9.8e-05	0.01	18.3	3.8	1	23	389	411	389	411	0.96
11	21	0.0041	0.42	13.2	4.3	2	20	418	436	417	439	0.92
12	21	1.9e-05	0.0019	20.6	0.5	2	23	446	467	446	467	0.97
13	21	0.00028	0.029	16.8	2.2	1	23	473	495	473	495	0.98
14	21	0.0056	0.57	12.8	3.6	1	20	501	520	501	523	0.94
15	21	4.1e-05	0.0042	19.5	3.9	1	23	529	551	529	551	0.98
16	21	2.8e-05	0.0029	20.0	1.3	1	23	557	579	557	579	0.98
17	21	2e-05	0.002	20.5	4.9	1	23	585	607	585	607	0.99
18	21	4.8e-06	0.00049	22.4	0.4	1	23	613	635	613	635	0.98
19	21	2.6e-07	2.6e-05	26.4	0.4	1	23	641	663	641	663	0.99
20	21	0.00012	0.012	18.0	4.9	1	23	669	691	669	691	0.99
21	21	1.4e-05	0.0014	21.0	0.2	1	20	697	716	697	718	0.96

Sequence Information

Coding Sequence: atggaAGAATCCGTGCAGATTAAGCTAGAAATAGAAGATTTCGAGCTGTCGGAAGCTCCGTGCCTTGACGCTACCGATCATATATTCGATAAACTAGGGCAAAACGATGTCGCTGAAACTAAACCAGCGGAAATACATTTTTTGGATGGCTCGGATGCGAGCTGTGGGACAGAGAAAAAGAGAACTCGGCCGTCGAAAGGATCAGACATCGAGCAACTAGCAATTGATTTGAAAAGGGAAAGAAATCTCACAATCTCATACACGCAAGATGACGCCTTGAACAGTTCGCAGCTTCCACCCGCAATGTCAACCAGCGATTCCACACAACCCTTCGAATGCGAGCTATGCGGCAAACGATTCAGTCGAAAGAAGGGCTTAAGCGATCACGTCCGAACACATGTACGGCATTTCAGTTGCACTATCTGCGGTAATACATTCTCTAAGAAATGCGATATGCTGCGTCATCTATACACTCACACCGATAAACCGTATATGTGCACCGTATGTGGCAAATATTTTAGCTACAAAAATAAGCTAACCAATCACATGGTCGGTCATACGAGTGAGCGGCCCTACCTATGCGACGTGTGTGGCAAACATTTTATCCATCAACCAAGTCTGAGCAAACACATGCTGCTTCATACGGGTGAACGGCCATACAATTGCACTGTGTGTGGCAAAGGTTTTACCCTCAAAGCGAACCTATCCGCACACTTGCACATTCACAGGAGTGAGCGGCCTTACAAATGCACCGTTTGTGGCAAAGATTTTACCCACAAACATAAGCTGAACAAACACATGGTCAGTCATACGAATGACCGACCTTACAGCGTAAAGAATCCCACAGCCTACGCAAAAGACGACAGTTTGCAGGAAGCATCCTCCATTCCGACCGGTGATTCCACCCGGCCACACGCATGCGAGATTTGCGGCAAGCGATTCATCTATAAGTGGAACATGGTCGAGCACGTCCGGATACATAGCGGTGAACGTCCATTCAGTTGTGATGTCTGTGGTAAGGCATACTCTAGGAAACATGATTTGCAGAACCATCAGAACATCCACATCGATAAGCGGCAGTTCAAGTGCACCGTGTGTGGCAAAGATTTTACCAACCGAAATAGTTTAACCAAGCATATGGCGGTTCATTTGGGTGAGCGGAAGTACAAATGCAAAGAGTGTGACAAAGATTTCATCCACCGAGCTAGCCTAACCAAGCACAAGCTCTTTCATATGGATGAGGGACCGTGTAAGTGCACTGTTTGTGGGCAAGATTTTGCCCACAAACATAAGCTGAAAATACACATGCCCATTCATACGGGTAAGTGGCCTAACAGCTGCACTGTGTGTGGCAAAGGTTTTTTCTACAAATATCAGCTGACCTCACACATGATCGTTCATACGAATGAGCGGACTTACAAATGCGCGTTGTGTGACAAAGATTGCAACAATCAAACTGAGTTGACAACGCACATGTTCATTCATACGGGTGACTGGCCTTACAAGTGCACTGTGTGTAGCAAAGGCTACAGTCATAAATGTAAGCTGGAGGAACACATGCCCATTCATACGGGTGAGTGGCCGTTCAAGTGCACTGTATGTGACGAAGGTTTTTCTCACAAATGTAAACTAGAGAAACACATGATCGTTCATACGGGTGAGTGGCCGTTCAAGTGCACTTTGTGCGGCCAAGGTTTCAGTTACAATTTTATGTTGGAGAAACACATGTTTGTTCATACGAAGGAGCGACCTTACAAGTGTACCGAGTGTAACAAAGGCTTTACCCACCCGCACAGGTTGACCACACACATGCTCATGCATACGGGCAAATGGTCTTACAAGTGCACCGTGTGTGGTAAAGGTTTTGTTTACGAATATAAGTTGACCACACACATGGCCATACATACGAATGAACGGCCTTACAAGTGCACTGTATGTGACAAAGGtttcaacaataaaattaaCCTGGCAAGGCACATGTTGGTTCATACGGATGACTGGCCCTACAAGTGTACTGTGTGTGGCAAAGGTTATACTCACAAATGTAAGCTGGACAAACACATGCTCGTTCATACGGTGGATGAGTCGTTCAAATGCCCTGTATGTAGCAAATATTTTGTGCGTAAGGCTTATCTAACCAAGCATATGGCAGCTGAGACATGTGTGGCAAAGGATACATTACCGAGTGTTGATTGA
Protein Sequence: MEESVQIKLEIEDFELSEAPCLDATDHIFDKLGQNDVAETKPAEIHFLDGSDASCGTEKKRTRPSKGSDIEQLAIDLKRERNLTISYTQDDALNSSQLPPAMSTSDSTQPFECELCGKRFSRKKGLSDHVRTHVRHFSCTICGNTFSKKCDMLRHLYTHTDKPYMCTVCGKYFSYKNKLTNHMVGHTSERPYLCDVCGKHFIHQPSLSKHMLLHTGERPYNCTVCGKGFTLKANLSAHLHIHRSERPYKCTVCGKDFTHKHKLNKHMVSHTNDRPYSVKNPTAYAKDDSLQEASSIPTGDSTRPHACEICGKRFIYKWNMVEHVRIHSGERPFSCDVCGKAYSRKHDLQNHQNIHIDKRQFKCTVCGKDFTNRNSLTKHMAVHLGERKYKCKECDKDFIHRASLTKHKLFHMDEGPCKCTVCGQDFAHKHKLKIHMPIHTGKWPNSCTVCGKGFFYKYQLTSHMIVHTNERTYKCALCDKDCNNQTELTTHMFIHTGDWPYKCTVCSKGYSHKCKLEEHMPIHTGEWPFKCTVCDEGFSHKCKLEKHMIVHTGEWPFKCTLCGQGFSYNFMLEKHMFVHTKERPYKCTECNKGFTHPHRLTTHMLMHTGKWSYKCTVCGKGFVYEYKLTTHMAIHTNERPYKCTVCDKGFNNKINLARHMLVHTDDWPYKCTVCGKGYTHKCKLDKHMLVHTVDESFKCPVCSKYFVRKAYLTKHMAAETCVAKDTLPSVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -