Tyan013676.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Topomyia yanbarensis
Gene Symbol
-
Assembly
GCA_030247195.1
Location
CM058068.1:201272097-201275127[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00017 0.017 17.5 0.9 1 23 10 32 10 32 0.99
2 25 2.3e-05 0.0023 20.3 0.8 1 23 38 60 38 60 0.97
3 25 0.00049 0.05 16.1 0.4 1 23 66 88 66 88 0.98
4 25 2.6e-05 0.0026 20.1 2.2 1 23 94 116 94 116 0.93
5 25 6.2e-05 0.0063 18.9 1.3 1 23 122 144 122 144 0.98
6 25 4.9e-06 0.00049 22.4 2.4 1 23 150 172 150 172 0.99
7 25 0.00012 0.013 18.0 3.2 1 21 178 198 178 200 0.96
8 25 0.00036 0.036 16.5 0.3 1 23 208 230 208 230 0.97
9 25 1.6e-05 0.0017 20.7 2.4 1 23 236 259 236 259 0.96
10 25 0.00069 0.07 15.6 3.2 1 23 264 286 264 286 0.98
11 25 1.1 1.1e+02 5.6 2.0 1 14 292 305 292 306 0.92
12 25 5.8e-05 0.0059 19.0 6.7 2 23 323 344 322 344 0.98
13 25 1.2e-07 1.2e-05 27.4 1.0 2 23 351 372 350 372 0.97
14 25 0.0028 0.28 13.7 1.4 1 23 378 400 378 400 0.98
15 25 0.0004 0.041 16.4 2.8 1 23 406 428 406 428 0.99
16 25 0.0058 0.59 12.7 0.8 3 23 436 456 434 456 0.94
17 25 2e-06 0.00021 23.6 1.1 1 23 462 484 462 484 0.98
18 25 0.00015 0.015 17.7 1.2 1 23 490 512 490 512 0.95
19 25 9e-05 0.0092 18.4 3.8 1 23 518 540 518 540 0.98
20 25 4.7e-05 0.0048 19.3 1.3 2 20 547 565 546 568 0.92
21 25 8.6e-05 0.0088 18.5 3.4 1 21 574 594 574 596 0.95
22 25 0.024 2.5 10.8 0.0 1 23 604 626 604 626 0.97
23 25 0.046 4.7 9.9 1.5 1 23 632 655 632 655 0.95
24 25 1.7e-06 0.00017 23.8 0.7 1 23 660 682 660 682 0.99
25 25 4.1e-06 0.00041 22.6 3.4 2 23 689 711 688 711 0.96

Sequence Information

Coding Sequence
ATGAGGCTGCATACTGGAAACTACAACTACAAGTGTGATGCCTGTGGCAAAGGATACAGTACAAAGCAGAAGTTTATGATCCATGTGAGATCCCATACAGGTGAACGGCCGCACGAATGTAGCATATGTGGGAAAAGTTTTGCTGGCCCTAACTACCTGAGAGATCATTCGCGAAGACATACGGAAAATTCAGGATATAACTGTGATGTTTGTGGCAAAGGGTGTGATTCAAGAGCCGCGCTTACGATTCACGAAAAATCTCACAGCACCGAGCGGGCATACAAATGTGACACATGTGGCAAGAGATTCAAAACTAACTATTCGCTGCGGTATCACAGTGGAGTACACATGGTCGAACATCCTTTCAACTGTGACATTTGTGGCAAGGGATTCGCTTTCCAAGGACAGTTCCATCAACACCTAAAAATTCACACGGACGAACATCTGTATCGGTGTAATGTTTGCAACAAAGATTTCAGAAGTAATTATTTCCTCGTCACACACATGCGTTCTCATACGGATGAACGGCCATACAAGTGTGAAGTTTGTGGTTCTTCGTTCAAGTTTTCCAATAACCTCACAGTTCACATGAGATGTCACTCAAACCTACCATCAAAGCCTTTCGAATGTGACATATGCGGAGCAAAGTTCGGTCAGCAACGACACCTCGACGTTCACCGTGAGGTTCATCGAGAGGGACAGTTCCACGAATGCTCTGATTGTGACAAACAATTTCGCTTTTCTAGCCAGCTGGAGAAACATAGAGTCACCATTCACAAATATCGACCGTACAAATGCACGACCTGTGAGAGAGCCTTCTTCACTCTAGCGCACTTGCGGCAACATTCGAAAGTTCACACTGGCTTGAATCCGTTCAAATGTCAGAGTTGCGAGCAGAGCTTTACAAGGAACCATTCCGACGACGAGCCGGATGATGATGATACCACCGGCCTGGATGGCTCCAACAAATGCACCATTTGCGATCGACAATTCTCTAAACAGTGCCACTTGAAATGGCACATGCGAAGCCACATCGCAAAAACAACCCTCCGATGTGACATTTGCGGGAAAATCTTTAAGCGGAGAGACTTACTCGAAAGACATAGAAGAACGCATACCGGTGAACGGCCGTTCCGTTGCGAACTGTGTGGCAAAGGTTTCGTATGCAAACCCTATCTGGACAAGCATATACGATTGCATACTGGAAATCACATCTACAAGTGCGACGTTTGTGGCAAAGGATTTAATTCAAAGTGTAGGTTTATGGGGCACGTGAGAACCCATACAGGCGAGCGCCCGTACGGATGTGACATCTGTGGAAAAAGTTTCGTTAGCCAGTGCATCCTGAGAAATCACACCCTAGGACATACAGCAAATCGTACGTTCACCTGCGATGTTTGTGGCAAAGGATTTACTACAAAAATCAACCTTGAGCATCACGAGAAAATCCATAGCACCGATCGCCCACACGAATGTGACATATGTGGCAGAACTTTCAAATATGAAAAGGCGTTACGTTATCACCGTGGAGTGCACATGGCTGAACATCCTTTCAACTGTAACATTTGTGGCAAGGGATTCTCTTTCCATAGGCAGTTCAGTCAGCATCAGAGAATTCATAATGTCGGGCGTCGGGTTCGGTGTAATGTTTGCAACAAAGAGTTCAGAAGTAATTCTCACCTCGTCACACACATGCCGTCTCACACTGGTGAACGGCCACACAAATGTGAAGTTTGCGGTGCTTCGTTTAGGTTTTCTAGCAACCTCGTATCGCACATGAGATGTCACTCAAACCCAACATCAAAGCCTTTCGAATGTGACATATGCGGAGCAATGTTTGATCTAGAAAAAGTCCTCAACGCTCACAGTAAGGTTCATCGACAGACACCGTTCCATGAGTGCCCTGATTGTGACAAACAGTGTCTCACCGCTAGAGAGCTGGATAGGCATAGAGTCACCATTCACGATTATCGACCGTACAAATGTACGATCTGTGACAGAGCCACCACTTCCAAGGCGAACTTGCGGCAACATCTAAAAGTTCACACTGGCGTGAGTCTGCTGAAGTGTCACATTTGCGAGCAGAGTTTTACTAGGAGAACAAATCTTAATAAACATGTAAGAGTAAAGCACGCTGAAAATAATCCTCTGTAG
Protein Sequence
MRLHTGNYNYKCDACGKGYSTKQKFMIHVRSHTGERPHECSICGKSFAGPNYLRDHSRRHTENSGYNCDVCGKGCDSRAALTIHEKSHSTERAYKCDTCGKRFKTNYSLRYHSGVHMVEHPFNCDICGKGFAFQGQFHQHLKIHTDEHLYRCNVCNKDFRSNYFLVTHMRSHTDERPYKCEVCGSSFKFSNNLTVHMRCHSNLPSKPFECDICGAKFGQQRHLDVHREVHREGQFHECSDCDKQFRFSSQLEKHRVTIHKYRPYKCTTCERAFFTLAHLRQHSKVHTGLNPFKCQSCEQSFTRNHSDDEPDDDDTTGLDGSNKCTICDRQFSKQCHLKWHMRSHIAKTTLRCDICGKIFKRRDLLERHRRTHTGERPFRCELCGKGFVCKPYLDKHIRLHTGNHIYKCDVCGKGFNSKCRFMGHVRTHTGERPYGCDICGKSFVSQCILRNHTLGHTANRTFTCDVCGKGFTTKINLEHHEKIHSTDRPHECDICGRTFKYEKALRYHRGVHMAEHPFNCNICGKGFSFHRQFSQHQRIHNVGRRVRCNVCNKEFRSNSHLVTHMPSHTGERPHKCEVCGASFRFSSNLVSHMRCHSNPTSKPFECDICGAMFDLEKVLNAHSKVHRQTPFHECPDCDKQCLTARELDRHRVTIHDYRPYKCTICDRATTSKANLRQHLKVHTGVSLLKCHICEQSFTRRTNLNKHVRVKHAENNPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-