Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:201210407-201214929[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.016 1.6 11.3 1.1 2 23 48 69 47 69 0.97

2 28 0.0024 0.25 13.9 0.4 1 23 75 97 75 97 0.96

3 28 0.0069 0.7 12.5 0.6 1 20 103 122 103 125 0.94

4 28 0.0078 0.79 12.3 3.3 1 21 131 151 131 153 0.94

5 28 5.1e-06 0.00052 22.3 2.0 1 23 159 181 159 181 0.98

6 28 0.00032 0.033 16.7 0.2 1 23 187 209 187 209 0.95

7 28 0.00063 0.064 15.8 0.3 1 23 215 237 215 237 0.98

8 28 0.00094 0.096 15.2 1.8 1 23 243 265 243 265 0.95

9 28 1.3e-05 0.0014 21.0 0.7 1 23 271 293 271 293 0.99

10 28 0.00028 0.028 16.9 0.2 1 23 298 320 298 320 0.99

11 28 0.00067 0.069 15.6 2.9 1 21 324 344 324 346 0.94

12 28 0.00044 0.045 16.2 1.0 1 23 356 379 356 379 0.94

13 28 6.7e-05 0.0069 18.8 2.8 1 23 385 407 385 407 0.99

14 28 0.00018 0.019 17.4 1.8 1 22 413 434 413 437 0.92

15 28 0.00012 0.012 18.0 0.7 2 23 444 465 443 465 0.97

16 28 3.1e-06 0.00032 23.0 1.7 1 23 468 490 468 490 0.99

17 28 0.00039 0.04 16.4 2.5 1 21 496 516 496 518 0.95

18 28 0.00036 0.036 16.5 0.1 1 23 526 548 526 548 0.98

19 28 0.012 1.2 11.8 2.5 2 23 567 588 566 588 0.94

20 28 4.3e-05 0.0044 19.4 0.3 3 23 596 616 595 616 0.99

21 28 0.0054 0.55 12.8 1.1 1 23 622 644 622 644 0.91

22 28 4e-05 0.0041 19.5 1.7 1 23 650 672 650 672 0.98

23 28 9.6e-06 0.00098 21.5 1.0 1 23 678 700 678 700 0.98

24 28 0.0078 0.8 12.3 1.5 1 23 709 731 709 731 0.98

25 28 0.00051 0.052 16.0 0.3 1 23 737 759 737 759 0.98

26 28 1.2e-05 0.0012 21.2 2.1 1 23 765 787 765 787 0.98

27 28 0.0005 0.05 16.1 1.0 2 23 794 815 793 815 0.97

28 28 1.2e-05 0.0012 21.2 1.8 1 23 820 842 820 842 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.016	1.6	11.3	1.1	2	23	48	69	47	69	0.97
2	28	0.0024	0.25	13.9	0.4	1	23	75	97	75	97	0.96
3	28	0.0069	0.7	12.5	0.6	1	20	103	122	103	125	0.94
4	28	0.0078	0.79	12.3	3.3	1	21	131	151	131	153	0.94
5	28	5.1e-06	0.00052	22.3	2.0	1	23	159	181	159	181	0.98
6	28	0.00032	0.033	16.7	0.2	1	23	187	209	187	209	0.95
7	28	0.00063	0.064	15.8	0.3	1	23	215	237	215	237	0.98
8	28	0.00094	0.096	15.2	1.8	1	23	243	265	243	265	0.95
9	28	1.3e-05	0.0014	21.0	0.7	1	23	271	293	271	293	0.99
10	28	0.00028	0.028	16.9	0.2	1	23	298	320	298	320	0.99
11	28	0.00067	0.069	15.6	2.9	1	21	324	344	324	346	0.94
12	28	0.00044	0.045	16.2	1.0	1	23	356	379	356	379	0.94
13	28	6.7e-05	0.0069	18.8	2.8	1	23	385	407	385	407	0.99
14	28	0.00018	0.019	17.4	1.8	1	22	413	434	413	437	0.92
15	28	0.00012	0.012	18.0	0.7	2	23	444	465	443	465	0.97
16	28	3.1e-06	0.00032	23.0	1.7	1	23	468	490	468	490	0.99
17	28	0.00039	0.04	16.4	2.5	1	21	496	516	496	518	0.95
18	28	0.00036	0.036	16.5	0.1	1	23	526	548	526	548	0.98
19	28	0.012	1.2	11.8	2.5	2	23	567	588	566	588	0.94
20	28	4.3e-05	0.0044	19.4	0.3	3	23	596	616	595	616	0.99
21	28	0.0054	0.55	12.8	1.1	1	23	622	644	622	644	0.91
22	28	4e-05	0.0041	19.5	1.7	1	23	650	672	650	672	0.98
23	28	9.6e-06	0.00098	21.5	1.0	1	23	678	700	678	700	0.98
24	28	0.0078	0.8	12.3	1.5	1	23	709	731	709	731	0.98
25	28	0.00051	0.052	16.0	0.3	1	23	737	759	737	759	0.98
26	28	1.2e-05	0.0012	21.2	2.1	1	23	765	787	765	787	0.98
27	28	0.0005	0.05	16.1	1.0	2	23	794	815	793	815	0.97
28	28	1.2e-05	0.0012	21.2	1.8	1	23	820	842	820	842	0.99

Sequence Information

Coding Sequence: ATGGAGGAAAAGTTTATCGTTAAGGTCACGAAAGAGCCGATATCCATCATTTCATTGGCTAACTGCCACAAGACTTACCGTCACTCTGCCGACCAGccggatgatgatgatgatgatgatatcaGCCTAGAAGCATCCACCAAATGCGTCATTTGCGATCGACAGTGCGCTGCACTGTTCCAGCTTGATCGACACATGCGTATCCACACCAAAGAAGCACCCTACAGTTGTGACATTTGCGGGAAAGGCTATTACTTGAAGGTTATGCTCGTTAAGCACAGAACGCTTCATACTGACAAGCGCCCATACAAATGTGATGTGTGCGTCAAAAGTTACAAAACACTACAATCGCTATGGTCTCACAAATGGGTACATGCGACGGAACATCCCTTCAAATGTGACACTTGTGGTAAAACATTTCCCTTCAAGGCAAGGTTGGCAGAACATCGTAAATGTCATAGCACGGAACGTCTACATCGATGCAATGTTTGTGACAAAAGATTCAAAACTAGAGCGCTTCTCGTCCTACACATGAAAATACATTTTCGGGTGTCGTCGTTTCTTTGCGATATATGTGGGAAAATCTTGACAAGcgaaaaaaatctgcaaattcaTGCTAAATCTCACACTGGAGATAACATGTACGAGTGTGATATTTGTGGGAAAAAATTTGCTTCACGGTTATATATATTAGGACATTTGAAAACTCACAGCGTTGAAACCCCGCACAAATGTGAAGTATGTGACAAAAACTTTCGCACACGAAACGTGCTGCGGTGGCATAGCGCGTCTCATGCGACGAAACATCCCTTCAAATGCGACACCTGCGGTAAAGCGTTTGCCCTCAATGTACAACTCAGGTACCATCTGAAAACTCACCAGGAACGTCCGTATCGGTGCAGCATTTGCGACAAAGCCTGGCGAGTAAAATCTCAACTAGCCGATCACATGCTTCGGCATGTTCGACCTTTCCATTGTGACATATGCGGAAAAACGTTTCCCAAGGAGGGCAGCTTGAGAAATCATGCTAGATGCCATACTACTGAGAGTGATTTTGAGCATCCCCACAAATGTGACATCTGTGGCAAAAGCTTCTACGCAGCCTATTTGTTGCAGTATCACAAGGGGACGGTACATGCGACGGAACGTCCCTTCAAATGTGACACTTGTGGTAAAGATTTTTCCCTCGAGAAACAGCTGAAGCAACATCGGAAACGTCACAGTGCAGAGCGGCCGCATAAGTGCAATCTTTGCAACAAAGCATTCAGACTTCGTAAGGACCTCGTCACCCACATGCGTGGTGTACGACATGCAACAGAACGTCCCCTGAAGTGTGACACATGTGGCGAAGAATTTTCCACCAAGGTACAATTCGGGCAACATCTGAAAACGCACAGTCAGTATCAGTGCAACATTTGCGGCAAAGCGTTTAAGCTTAACTACCTCCTCGGTCACCACTTGCGTACTCATACCGGTGAACGTCCGTACAAATGCGAAATTTGTGGTGCATCGTACCGGGACAATAAATACCTTACCGCGCACCGAAAATGTCACTCAAGCGCCGGCGCTAAACCGTTCGAATGTGCGATATGCGAAGGAAAGTTCGACTCGAAAATTGCTCTCAACCGTCACATGAAGGTTCACTTCCACTCCGTCGACCAGCCGGATACGAAAGATACCATCCTCAACAACCCAACGAAATGCATCATTTGCGACCGACAGTGCAGTACACTGTTCAATCTTGGCCAACAcatgcgtacccacaccgatacAGTACCCCACGGGTGTGACATTTGCGGGAAAGGTTTCTACCGGAAGGCCCTGCTCAATAATCACCGCCTATCACACAGTGACGAGCGCCCACACACCTGTGACGTCTGTGGTAAAAGtttcaaaattatcaaatcGCTACAGTATCACAGTGTGGTACATGCGACGGAGCATCCCTTCGAATGTGACATTTGTGGCAAAAAATGTTCCTTGAAGGTACAGTTAAAGCAACACCTTAGAGCTCACCGCACGGACCGTCTGCATCGGTGCACTATCTGCGACAAGGCTTACCCGATTAATTCGCTACTCGTCCGTCATATGCGGAGGCATATTCGTGAAACGCCGGGCGGACCGTTCCATTGCGACGTGTGCGGAAATGATTATGCAGTCAGAAAACATCTGGAGATTCATACGAGAATCCATACTGGGGATCTAATGTACCGGTGTGATGTTTGTGGTAAAGGATATGCTTCACGCAACAGTTTTGCGTCTCACTCACTCACTCACTCCAGCGAGCGTCCGTTCCAATGTGACATGTGTGACAAAAGTTTCACCAAAAAGACTTCACTGCGGTATCACAGGGCGGTACATGCCACGGAACATCCCCTCAAATGTGACACTTGTGGCAAACAGTATTCCCTCGATATACAGCTAAAGCGACATCTGAAAACTCACGAGGAACGTAGGTTCCAGTGCAGCATGTGTGGCAAAAAGTTCATGATTAATTCTCGGCTTATCCGACATATGCGTAGGCATACGAGAGCATCGTGA
Protein Sequence: MEEKFIVKVTKEPISIISLANCHKTYRHSADQPDDDDDDDISLEASTKCVICDRQCAALFQLDRHMRIHTKEAPYSCDICGKGYYLKVMLVKHRTLHTDKRPYKCDVCVKSYKTLQSLWSHKWVHATEHPFKCDTCGKTFPFKARLAEHRKCHSTERLHRCNVCDKRFKTRALLVLHMKIHFRVSSFLCDICGKILTSEKNLQIHAKSHTGDNMYECDICGKKFASRLYILGHLKTHSVETPHKCEVCDKNFRTRNVLRWHSASHATKHPFKCDTCGKAFALNVQLRYHLKTHQERPYRCSICDKAWRVKSQLADHMLRHVRPFHCDICGKTFPKEGSLRNHARCHTTESDFEHPHKCDICGKSFYAAYLLQYHKGTVHATERPFKCDTCGKDFSLEKQLKQHRKRHSAERPHKCNLCNKAFRLRKDLVTHMRGVRHATERPLKCDTCGEEFSTKVQFGQHLKTHSQYQCNICGKAFKLNYLLGHHLRTHTGERPYKCEICGASYRDNKYLTAHRKCHSSAGAKPFECAICEGKFDSKIALNRHMKVHFHSVDQPDTKDTILNNPTKCIICDRQCSTLFNLGQHMRTHTDTVPHGCDICGKGFYRKALLNNHRLSHSDERPHTCDVCGKSFKIIKSLQYHSVVHATEHPFECDICGKKCSLKVQLKQHLRAHRTDRLHRCTICDKAYPINSLLVRHMRRHIRETPGGPFHCDVCGNDYAVRKHLEIHTRIHTGDLMYRCDVCGKGYASRNSFASHSLTHSSERPFQCDMCDKSFTKKTSLRYHRAVHATEHPLKCDTCGKQYSLDIQLKRHLKTHEERRFQCSMCGKKFMINSRLIRHMRRHTRAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -