Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:38335811-38339386[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0069 0.7 12.5 2.1 1 23 80 102 80 102 0.97

2 24 1.2e-05 0.0012 21.1 0.7 2 23 109 130 108 130 0.96

3 24 9.2e-07 9.4e-05 24.7 0.6 1 23 134 156 134 156 0.98

4 24 0.0013 0.14 14.7 2.2 1 23 162 184 162 184 0.97

5 24 0.0043 0.43 13.1 3.3 1 23 227 249 227 249 0.98

6 24 7.3e-06 0.00075 21.8 0.3 2 23 256 277 255 277 0.94

7 24 2.3e-06 0.00024 23.4 2.8 1 23 283 305 283 305 0.98

8 24 3.7e-06 0.00038 22.7 1.4 1 23 311 333 311 333 0.97

9 24 1.9e-05 0.002 20.5 0.4 1 23 339 361 339 361 0.98

10 24 1.3e-06 0.00013 24.2 1.0 1 23 367 389 367 389 0.99

11 24 2.8e-05 0.0028 20.0 3.6 1 23 434 456 434 456 0.99

12 24 7.9e-06 0.00081 21.7 0.8 3 23 464 484 462 484 0.98

13 24 0.00026 0.026 17.0 0.5 1 23 490 512 490 512 0.97

14 24 0.014 1.4 11.5 2.0 1 23 518 541 518 541 0.98

15 24 5.8e-06 0.00059 22.1 3.4 1 23 567 589 567 589 0.98

16 24 1.5e-05 0.0015 20.9 0.6 1 23 595 617 595 617 0.98

17 24 1.4e-06 0.00015 24.0 1.2 1 23 621 643 621 643 0.98

18 24 0.00069 0.07 15.6 0.2 1 23 649 671 649 671 0.97

19 24 0.07 7.1 9.3 6.0 1 23 755 777 755 777 0.98

20 24 1.2e-06 0.00012 24.3 1.0 1 23 783 805 783 805 0.98

21 24 8.4e-07 8.6e-05 24.8 0.9 1 23 811 833 811 833 0.98

22 24 0.00018 0.018 17.5 0.3 1 20 839 858 839 861 0.93

23 24 4.1e-05 0.0042 19.5 0.1 1 23 867 889 867 889 0.97

24 24 0.011 1.2 11.8 4.4 1 23 895 917 895 917 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0069	0.7	12.5	2.1	1	23	80	102	80	102	0.97
2	24	1.2e-05	0.0012	21.1	0.7	2	23	109	130	108	130	0.96
3	24	9.2e-07	9.4e-05	24.7	0.6	1	23	134	156	134	156	0.98
4	24	0.0013	0.14	14.7	2.2	1	23	162	184	162	184	0.97
5	24	0.0043	0.43	13.1	3.3	1	23	227	249	227	249	0.98
6	24	7.3e-06	0.00075	21.8	0.3	2	23	256	277	255	277	0.94
7	24	2.3e-06	0.00024	23.4	2.8	1	23	283	305	283	305	0.98
8	24	3.7e-06	0.00038	22.7	1.4	1	23	311	333	311	333	0.97
9	24	1.9e-05	0.002	20.5	0.4	1	23	339	361	339	361	0.98
10	24	1.3e-06	0.00013	24.2	1.0	1	23	367	389	367	389	0.99
11	24	2.8e-05	0.0028	20.0	3.6	1	23	434	456	434	456	0.99
12	24	7.9e-06	0.00081	21.7	0.8	3	23	464	484	462	484	0.98
13	24	0.00026	0.026	17.0	0.5	1	23	490	512	490	512	0.97
14	24	0.014	1.4	11.5	2.0	1	23	518	541	518	541	0.98
15	24	5.8e-06	0.00059	22.1	3.4	1	23	567	589	567	589	0.98
16	24	1.5e-05	0.0015	20.9	0.6	1	23	595	617	595	617	0.98
17	24	1.4e-06	0.00015	24.0	1.2	1	23	621	643	621	643	0.98
18	24	0.00069	0.07	15.6	0.2	1	23	649	671	649	671	0.97
19	24	0.07	7.1	9.3	6.0	1	23	755	777	755	777	0.98
20	24	1.2e-06	0.00012	24.3	1.0	1	23	783	805	783	805	0.98
21	24	8.4e-07	8.6e-05	24.8	0.9	1	23	811	833	811	833	0.98
22	24	0.00018	0.018	17.5	0.3	1	20	839	858	839	861	0.93
23	24	4.1e-05	0.0042	19.5	0.1	1	23	867	889	867	889	0.97
24	24	0.011	1.2	11.8	4.4	1	23	895	917	895	917	0.98

Sequence Information

Coding Sequence: ATGGAAATCGCAAAGCAAGACATCAGTAAAACTATCAATTGTGAAGCGTTCATTTCAGATGCATTCAGTTCGAATTGTGGTCCAGAAAGTAAGAGCAGTCATCTTTTCAAAGATCCCAACTCAGAACCACCAATAATAATTATTGATCTTAGTAGTTGCAGCGAAtctaatcaaagTGAGAAAACATCGGGTGCCCTCCTCGCACAGGATGATGCACAACAAAATAGCAGTCAACCACATGAATGTGAAATTTGTGGCAAACGATACCTTCATAGGAGGAACCTTGTCCAACACGTCAGCGTACATCGCGGCGAGCGGCTGCTCAGTTGCGAATTCTGTGATAAGACTTTTATCAGAAATTCTAGCTTATGGGCTCATCGGTATACCCACACCAGGCCGTACAAGTGCACCGTATGCGGCAAAGATTTTTCGCAAAAAGTCACCCTAAATGAACATATGTCCATTCATACGCGAGACTATCGGCACAGCTGTGATGTGTGTGGAAAAGGATTTAATTTCGGTTCTCGTTTGAAGGAGCACAAACGTACGCATACTGGGGAGCCCGGCAAAAAGAAAGTGAAAACCGAACCAACAGGAAAAAACGCGCAGAACAACGGGGATTCATCTCTTAACCTGCCGAAAGCCTCTCGCATTTTAACCAACGATTCTAAATGGTTACACAAATGCAAGCTTTGCAACAAGCGGTTTCTACAGAGGGATCAATTTGCCGCACACGTCCAGACACATCTCGATAAACGGCCCCTCAGTTGTGACATCTGCGGTAAGACATTCTCCAGGAACTCAGCTTTATTGATTCATCGGTATTTACACACCGATGAGCGTCCGTTCAAGTGCACCATTTGTGGCAAAGATTTTAAACACAAAAGTAGACTAACTGTACATATGGCTTCCCATTCGGGTGAGTTTCCACACAAGTGCACTATATGCGGGAAAGCCTTTGTCTTGAAAAGTAACCTTTCCTCACATATGTCCCTTCATACGGGTGATCGGCCATTCAAGTGCCCCCTTTGCGGCAgagattttgttaaaaaatatcTCCTATCCTTGCACATGTCCGTTCATACGGGTGTCTATCGGTACAAATGTGATGGGTGTGGTAAAGGATTCAATACTAACTATCGTTTGAAGGAGCACCAGCGCATACACACTTGTGGGCAGCTGCACAGCGAGAACGTCCCTGTGGATGACCATGATATGGATGATAAGCAAAATAAGGGAAATCCACCCAACTCTCTGCAGCCAACATCTCAAGTCTCAACCGTCGATTCCACTCGACCATACAAGTGCGAATTTTGTGACAAACAATTCCATCGTAAGAGCAGTCTAGTTCAACACGTCCGGGTACATCGCGGCGAAAAACCATTCGGTTGCGATATCTGCGACAAGGCATTTTTCAGGAAGGACAGCTTATGGAGTCATCGACGAACACACAGCGGTGAGCGGCCGTTCAATTGCACGGTGTGTGGCaaagattttgctttcaaaAATGTCCTCACCACACACATGTCCATTCATACGGGTGTCTATCGGCACAGGTGTGATCTGTGTGGCAAAGGAATACATTCCGTTTCTCGATTGGAGGAGCACATGCGTACTACGCATGGGAACGGCGAAATGAATTTGCAAAGCAGCAAGAATTCACCCAACAATATGAAGGTAAAATCTCCTATCTTGCCACACGAATGCGAGCATTGTGGTAAACGATTTATTCGCAAAAGCCGCCTTGCTGAACACATCCGCTCACATACCGGTGAACGGCCGTTCAGTTGCGATGCATGCGATAAGACTTTCATTAATAGTTCAAGTCTTTATGCACATCAGAATTCACATAGCAGACCGTACAAGTGCAGCATATGCGATAAAGATTTTACCCAAAAAGTTAGCCTAACCACACATATGTCCCTTCATACCGGTAACTATCGGTACAGTTGTGACGTTTGTGGTAAAGGTTTTAATTTGGAATCTCGATTGAAGGAGCATTTGCTTTTGCACAAACATACTGGTGATGTAACGCATAGTGAGAATACAGTGGCAGAATACAACGCACAAGAAGACAAGCAGAGCAATGAGTATCCCCACAACATTGTAAAGGTAGAATCTCCCATTTTATCCATCGAATCCACACAAAGCGAGGAAAATCTCTCAACAAACGATGCAAGTGACGACGTGCGAAACGACCAACAACCACCTAGCCCCCTGCATGAAGCATGCCCCATTCCATTTATCGATTCCAAACGGCCACATGAATGCAAACATTGCGCTAAACGATTTCTACAGAAGTGGCACCTGGTCGATCATCTTCAGACACATAGCGGCAAACGACCATTCAGCTGCGATGTATGCGGTAAGACATTCGTCAGAACTTCTACCTTGTCGATCCATCAGAAGACTCACACCGGTGAGCGAGCTTTCAATTGCACCGTATGTGGCAAAGATTTTACCTACAAATATAGTCTAACCGCACACATGCAGATTCACACGGGTGAGACACCGCACAAGTGTAACGTGTGCGGCCAAACTTTTGTCTACAAAAATGGTTTAATCGCGCATATGCCCATTCATACTGGTGAGTGGCTTTACAGGTGTACCGTGTGTGACAAAGGGTTTGCCATAAAAAGTGCCCTAACCGACCACATGGCTCTTCACACGGGTGTCTATCGGCACAAGTGTGATGTGTGTGGTAAAGGATTCCATGCCAGCACTCGTTTGAAGGTACACAAACGCAGGCATATTAATGATCCATCGTCCGGGTTGGTCAGTTAA
Protein Sequence: MEIAKQDISKTINCEAFISDAFSSNCGPESKSSHLFKDPNSEPPIIIIDLSSCSESNQSEKTSGALLAQDDAQQNSSQPHECEICGKRYLHRRNLVQHVSVHRGERLLSCEFCDKTFIRNSSLWAHRYTHTRPYKCTVCGKDFSQKVTLNEHMSIHTRDYRHSCDVCGKGFNFGSRLKEHKRTHTGEPGKKKVKTEPTGKNAQNNGDSSLNLPKASRILTNDSKWLHKCKLCNKRFLQRDQFAAHVQTHLDKRPLSCDICGKTFSRNSALLIHRYLHTDERPFKCTICGKDFKHKSRLTVHMASHSGEFPHKCTICGKAFVLKSNLSSHMSLHTGDRPFKCPLCGRDFVKKYLLSLHMSVHTGVYRYKCDGCGKGFNTNYRLKEHQRIHTCGQLHSENVPVDDHDMDDKQNKGNPPNSLQPTSQVSTVDSTRPYKCEFCDKQFHRKSSLVQHVRVHRGEKPFGCDICDKAFFRKDSLWSHRRTHSGERPFNCTVCGKDFAFKNVLTTHMSIHTGVYRHRCDLCGKGIHSVSRLEEHMRTTHGNGEMNLQSSKNSPNNMKVKSPILPHECEHCGKRFIRKSRLAEHIRSHTGERPFSCDACDKTFINSSSLYAHQNSHSRPYKCSICDKDFTQKVSLTTHMSLHTGNYRYSCDVCGKGFNLESRLKEHLLLHKHTGDVTHSENTVAEYNAQEDKQSNEYPHNIVKVESPILSIESTQSEENLSTNDASDDVRNDQQPPSPLHEACPIPFIDSKRPHECKHCAKRFLQKWHLVDHLQTHSGKRPFSCDVCGKTFVRTSTLSIHQKTHTGERAFNCTVCGKDFTYKYSLTAHMQIHTGETPHKCNVCGQTFVYKNGLIAHMPIHTGEWLYRCTVCDKGFAIKSALTDHMALHTGVYRHKCDVCGKGFHASTRLKVHKRRHINDPSSGLVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -