Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:460699375-460712312[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 1.1e-05 0.0011 21.3 1.9 1 23 94 116 94 116 0.99

2 23 0.00033 0.033 16.6 4.1 1 23 122 144 122 144 0.97

3 23 6.2e-05 0.0063 18.9 1.7 1 23 150 172 150 172 0.98

4 23 2.7e-07 2.7e-05 26.3 1.1 1 23 178 200 178 200 0.98

5 23 8.4e-06 0.00085 21.6 0.3 2 23 207 228 206 228 0.98

6 23 6.2e-05 0.0063 18.9 1.7 1 23 234 256 234 256 0.98

7 23 2.2e-07 2.3e-05 26.6 1.7 1 23 262 284 262 284 0.98

8 23 8.4e-06 0.00085 21.6 0.3 2 23 291 312 290 312 0.98

9 23 6.8e-06 0.00069 21.9 0.7 1 23 318 340 318 340 0.98

10 23 3.6e-07 3.6e-05 26.0 3.6 1 23 346 368 346 368 0.99

11 23 5.3e-06 0.00054 22.3 0.4 1 23 374 396 374 396 0.98

12 23 6.2e-05 0.0063 18.9 1.7 1 23 402 424 402 424 0.98

13 23 2e-06 0.0002 23.6 2.6 1 23 430 452 430 452 0.97

14 23 2e-06 0.00021 23.6 0.3 1 23 458 480 458 480 0.98

15 23 0.17 17 8.1 0.4 1 12 486 497 486 500 0.86

16 23 2.9e-05 0.003 19.9 0.9 1 23 558 580 558 580 0.99

17 23 0.00073 0.074 15.5 2.8 1 23 586 608 586 608 0.98

18 23 7.5e-05 0.0076 18.6 2.2 1 23 614 636 614 636 0.97

19 23 1.6e-06 0.00016 23.9 1.0 1 23 642 664 642 664 0.98

20 23 1.5e-05 0.0016 20.8 0.9 1 23 670 692 670 692 0.98

21 23 4.1e-06 0.00041 22.6 3.8 1 23 698 720 698 720 0.99

22 23 3.5e-05 0.0035 19.7 2.1 2 23 727 748 726 748 0.96

23 23 0.0007 0.072 15.6 1.9 1 23 754 776 754 776 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	1.1e-05	0.0011	21.3	1.9	1	23	94	116	94	116	0.99
2	23	0.00033	0.033	16.6	4.1	1	23	122	144	122	144	0.97
3	23	6.2e-05	0.0063	18.9	1.7	1	23	150	172	150	172	0.98
4	23	2.7e-07	2.7e-05	26.3	1.1	1	23	178	200	178	200	0.98
5	23	8.4e-06	0.00085	21.6	0.3	2	23	207	228	206	228	0.98
6	23	6.2e-05	0.0063	18.9	1.7	1	23	234	256	234	256	0.98
7	23	2.2e-07	2.3e-05	26.6	1.7	1	23	262	284	262	284	0.98
8	23	8.4e-06	0.00085	21.6	0.3	2	23	291	312	290	312	0.98
9	23	6.8e-06	0.00069	21.9	0.7	1	23	318	340	318	340	0.98
10	23	3.6e-07	3.6e-05	26.0	3.6	1	23	346	368	346	368	0.99
11	23	5.3e-06	0.00054	22.3	0.4	1	23	374	396	374	396	0.98
12	23	6.2e-05	0.0063	18.9	1.7	1	23	402	424	402	424	0.98
13	23	2e-06	0.0002	23.6	2.6	1	23	430	452	430	452	0.97
14	23	2e-06	0.00021	23.6	0.3	1	23	458	480	458	480	0.98
15	23	0.17	17	8.1	0.4	1	12	486	497	486	500	0.86
16	23	2.9e-05	0.003	19.9	0.9	1	23	558	580	558	580	0.99
17	23	0.00073	0.074	15.5	2.8	1	23	586	608	586	608	0.98
18	23	7.5e-05	0.0076	18.6	2.2	1	23	614	636	614	636	0.97
19	23	1.6e-06	0.00016	23.9	1.0	1	23	642	664	642	664	0.98
20	23	1.5e-05	0.0016	20.8	0.9	1	23	670	692	670	692	0.98
21	23	4.1e-06	0.00041	22.6	3.8	1	23	698	720	698	720	0.99
22	23	3.5e-05	0.0035	19.7	2.1	2	23	727	748	726	748	0.96
23	23	0.0007	0.072	15.6	1.9	1	23	754	776	754	776	0.97

Sequence Information

Coding Sequence: ATGGAGCTTGTGAACGGACTTTCCACCCCAATTACGGCGGAGGAGGAAGCTACCGAAGGAACCTGCGGTACTGATCACCGTGTGGCAACGATTTCATCAAATGGCACTGATGCTAACAGCGGTTTCTCAATACTGTCGGAATCACAGTGGGAGCTTAGGGATCAGATGGACATGTCTTCAAAGCAACGGAAGCAAACCAACAGTGAGATATGTGGACAAGCATCCCTTCAGAATTGTCCCCTGGGGCGAGCTGTGTTAACCGACACTGGCAAGCGGCCGTACAAATGTGATACGTGCGACAAATCATTTAATAAGGAGAGTGTTTTGAACAGACACAGAAAGATTCACAGTAATGAACGACCGCATAAGTGCGAGTTATGTGACAATGAATTCGTTCAAAAGCAGCACCTAAAGCGTCATATGGTAAGTCACGCTGGCGAGCGGGCGCACAAATGCGAGATATGTGGCAAAGGATTCGTCGAGAAGCGGTATATGAAACAACATATGGTAACTCACATTGGCGAGCGACCGTATAAATGTGATATATGTGACAAATCATTTAAACGTCAGAGTGCGCTAATTTTACACACAAAGAATCACAATAATGAGCAACCGAGTAAATGTGAGATATGTGGCAAAGGATTCGTTCGGAAGTCTTATATGGAGCAACATGTGTTAACTCACACTGGCGAGCAGCTGCACAAATGCGAGATATGTGGCAAAGGATTCGTCGAGAAGCGGTATATGAAACAACATATGGTAACTCACATTGGCGAGCGACCGTATAAATGTGATATATGTGACAAATCATTTAAACGTCAGAGTGCGCTAACTTTACACACAAAGAATCACAATAATGAGCAACCGAGTAAATGTGAGATATGTGGCAAAGGATTCGTTCGGAAGTCTTATATGGAGCAACATGTGTTAACTCACACAGGCGAGCAGCCGCACAAATGCGAGATATGTGGCAAAGGATTTGTTCAGAAGTCCTTAATAAAAATACATATGGTAACTCACACTGGCGAGCGACCGTATAAATGTGATATATGTGACAAATCATTTAAACATCAGAGTTCGCTTATTTCGCACACAAGGAATCACAGTAATGAACAACCGTATAATTGTGAGATATGTGGTAGAGGATTCATTAAGAAGTCGTTAATGAAAAACCATATGATAACTCACACTGGCGAGCGGCCGCACAAATGCGAGATATGTGGCAAAGGATTCGTCGAGAAGCGGTATATGAAACAACATATGGTAACTCACACTGGCGAGCGACCGTATAAATGTGATATATGTGACAAATCATTTAAACATCAGAGTGCGCTTATTTCACACACAAGTTATCACAGTAATGAACAACCGTATAATTGTGAGATATGTGGTAGAGGATTCATTCAGAAGTCGTTAATGAAAAACCATATGATAACTCACACTGGCGAGCGGCCGCACAAATGCGAGATATGTGGCAAAGGATTCGTCGAGAAGCGAACTAGTACTAACAGCAGTCTCTCAACACTGTCGGAATCACAGTGGGAGCTTAGGGATCAGTTAGACATGTCTTCAAAGCAACGGAAGCAAACCAACAGTGAGCTATGTGGACAAGAACCCCTTCAGAATTGTTCCCTGGGGCGAGCTGTGTTAACCGACACTGAAAAGCGGCCGTACAAATGTGATATATGTAGCAAATCATTTAATAAGGCGGTTGTTTTGAACAGGCACAGAAAGATTCACAGAACTGAACAACCGCATAAATGCGAGATATGTGGCAAAGGATTCCTTCACAAGTATCTCCTTATGCAACATGTGTTAACTCACACTGGCGAGCGGCCGCACAAATGCGAAATATGTGGCAAAGGATTCCATGAAAATTATCAGCTTGAGCGACATGTGGTAACTCACACTGGCGAGCGGCCGCACAAATGCGAGATATGTGGCAAAGGATTCGTTCAGAAGGCTGATATGAAAAAACATATGGTAACTCACGCTGGTGAGCGGCCGCACAAATGCGAGATATGTGGCAAAGGATTTGTTCAGAAGGCTTATATAAAACAACATATGGTAACTCACACTGGCGTGCAGACGTATAAATGCGAGATATGTGGCAATGAATTCGTTCATAAGCATAGCCTCAAGCGTCATATGATAACTCACACTGGTGAGCGGCCTTGCAAATGCAAAATATGTGGCAAAGGATTCGTTGAGAAGTCTTTAATGAAACAACATATGGTTACTCACACTGGCGAGTGGCCGTACAAATGCGAGATATGTGGCAAAGGATTCGTTCGCAAGTATCTACATATGCAACATGTGTCAACTCACACTGGCGAGCGGCCGCACAAATGA
Protein Sequence: MELVNGLSTPITAEEEATEGTCGTDHRVATISSNGTDANSGFSILSESQWELRDQMDMSSKQRKQTNSEICGQASLQNCPLGRAVLTDTGKRPYKCDTCDKSFNKESVLNRHRKIHSNERPHKCELCDNEFVQKQHLKRHMVSHAGERAHKCEICGKGFVEKRYMKQHMVTHIGERPYKCDICDKSFKRQSALILHTKNHNNEQPSKCEICGKGFVRKSYMEQHVLTHTGEQLHKCEICGKGFVEKRYMKQHMVTHIGERPYKCDICDKSFKRQSALTLHTKNHNNEQPSKCEICGKGFVRKSYMEQHVLTHTGEQPHKCEICGKGFVQKSLIKIHMVTHTGERPYKCDICDKSFKHQSSLISHTRNHSNEQPYNCEICGRGFIKKSLMKNHMITHTGERPHKCEICGKGFVEKRYMKQHMVTHTGERPYKCDICDKSFKHQSALISHTSYHSNEQPYNCEICGRGFIQKSLMKNHMITHTGERPHKCEICGKGFVEKRTSTNSSLSTLSESQWELRDQLDMSSKQRKQTNSELCGQEPLQNCSLGRAVLTDTEKRPYKCDICSKSFNKAVVLNRHRKIHRTEQPHKCEICGKGFLHKYLLMQHVLTHTGERPHKCEICGKGFHENYQLERHVVTHTGERPHKCEICGKGFVQKADMKKHMVTHAGERPHKCEICGKGFVQKAYIKQHMVTHTGVQTYKCEICGNEFVHKHSLKRHMITHTGERPCKCKICGKGFVEKSLMKQHMVTHTGEWPYKCEICGKGFVRKYLHMQHVSTHTGERPHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -