Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:201188997-201195671[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.02 2 11.0 3.8 2 23 61 82 60 82 0.94

2 28 0.00026 0.026 16.9 0.9 1 23 88 110 88 110 0.97

3 28 0.00018 0.018 17.5 4.2 1 23 116 138 116 138 0.98

4 28 0.00019 0.019 17.4 0.9 1 23 144 166 144 166 0.99

5 28 3.9e-05 0.0039 19.6 0.7 1 23 172 194 172 194 0.98

6 28 3.8e-05 0.0039 19.6 2.0 1 23 200 222 200 222 0.98

7 28 0.00022 0.022 17.2 0.5 1 23 228 250 228 250 0.97

8 28 8.6e-06 0.00088 21.6 2.3 1 23 256 278 256 278 0.99

9 28 0.0015 0.15 14.6 3.2 1 21 284 304 284 306 0.95

10 28 5.8e-06 0.00059 22.1 0.3 1 23 312 334 312 334 0.99

11 28 0.00087 0.088 15.3 0.1 1 23 342 364 342 364 0.97

12 28 0.31 32 7.3 0.4 2 23 371 393 370 393 0.93

13 28 0.0001 0.01 18.3 0.3 1 23 398 420 398 420 0.97

14 28 3.7e-07 3.7e-05 25.9 1.8 1 23 426 448 426 448 0.98

15 28 2.6e-05 0.0026 20.1 2.2 2 23 507 528 506 528 0.97

16 28 0.00089 0.091 15.3 1.3 1 23 534 556 534 556 0.97

17 28 9.5e-07 9.7e-05 24.6 0.9 1 23 562 584 562 584 0.99

18 28 6.5e-06 0.00066 22.0 0.5 1 23 590 612 590 612 0.99

19 28 0.00028 0.028 16.9 1.7 1 23 618 640 618 640 0.95

20 28 2e-06 0.00021 23.6 1.2 1 23 646 668 646 668 0.98

21 28 0.00025 0.026 17.0 3.2 1 21 674 694 674 696 0.96

22 28 2.1e-07 2.1e-05 26.7 2.1 1 23 702 724 702 724 0.99

23 28 8.3e-06 0.00084 21.7 1.0 1 23 730 752 730 752 0.99

24 28 0.013 1.4 11.6 3.2 1 23 758 780 758 780 0.92

25 28 4.9e-07 5e-05 25.5 0.7 1 23 786 808 786 808 0.99

26 28 1.1e-05 0.0011 21.3 1.0 1 23 814 836 814 836 0.98

27 28 8.4e-05 0.0085 18.5 0.1 1 23 842 864 842 864 0.97

28 28 1.2e-05 0.0013 21.1 4.5 1 23 882 904 882 904 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.02	2	11.0	3.8	2	23	61	82	60	82	0.94
2	28	0.00026	0.026	16.9	0.9	1	23	88	110	88	110	0.97
3	28	0.00018	0.018	17.5	4.2	1	23	116	138	116	138	0.98
4	28	0.00019	0.019	17.4	0.9	1	23	144	166	144	166	0.99
5	28	3.9e-05	0.0039	19.6	0.7	1	23	172	194	172	194	0.98
6	28	3.8e-05	0.0039	19.6	2.0	1	23	200	222	200	222	0.98
7	28	0.00022	0.022	17.2	0.5	1	23	228	250	228	250	0.97
8	28	8.6e-06	0.00088	21.6	2.3	1	23	256	278	256	278	0.99
9	28	0.0015	0.15	14.6	3.2	1	21	284	304	284	306	0.95
10	28	5.8e-06	0.00059	22.1	0.3	1	23	312	334	312	334	0.99
11	28	0.00087	0.088	15.3	0.1	1	23	342	364	342	364	0.97
12	28	0.31	32	7.3	0.4	2	23	371	393	370	393	0.93
13	28	0.0001	0.01	18.3	0.3	1	23	398	420	398	420	0.97
14	28	3.7e-07	3.7e-05	25.9	1.8	1	23	426	448	426	448	0.98
15	28	2.6e-05	0.0026	20.1	2.2	2	23	507	528	506	528	0.97
16	28	0.00089	0.091	15.3	1.3	1	23	534	556	534	556	0.97
17	28	9.5e-07	9.7e-05	24.6	0.9	1	23	562	584	562	584	0.99
18	28	6.5e-06	0.00066	22.0	0.5	1	23	590	612	590	612	0.99
19	28	0.00028	0.028	16.9	1.7	1	23	618	640	618	640	0.95
20	28	2e-06	0.00021	23.6	1.2	1	23	646	668	646	668	0.98
21	28	0.00025	0.026	17.0	3.2	1	21	674	694	674	696	0.96
22	28	2.1e-07	2.1e-05	26.7	2.1	1	23	702	724	702	724	0.99
23	28	8.3e-06	0.00084	21.7	1.0	1	23	730	752	730	752	0.99
24	28	0.013	1.4	11.6	3.2	1	23	758	780	758	780	0.92
25	28	4.9e-07	5e-05	25.5	0.7	1	23	786	808	786	808	0.99
26	28	1.1e-05	0.0011	21.3	1.0	1	23	814	836	814	836	0.98
27	28	8.4e-05	0.0085	18.5	0.1	1	23	842	864	842	864	0.97
28	28	1.2e-05	0.0013	21.1	4.5	1	23	882	904	882	904	0.98

Sequence Information

Coding Sequence: atGTCCGACGACGAGTTGCACGGATTTGAGGGAGAAACTGATGATCCACGCGAAAAGGATCATGGCGGTTCGGCATCCGGCGGCGACGACGATGAACGCATATTAACGCTTCTCATGCGCCATTCCGACGAGGAGCCGGATGGTGTTGATGGTAACGATAGCATCCTCAAAAAGCCCACCAAATGCATCATTTGCGATCAACAATTTGCTAAATTGTGCTATTTCAAACGGCACATGCGAACCCACACCGAAGGAGCACCCCACCGTTGTGACATTTGCGGGAAAGGCTACATCGAGTTAAGTGCTCTCAAACAACACCAGTTTCGTCACAGCGACCAACGGCCGCACAAGTGCGAAATCTGCGATAAAAGTTTCGCCTCTAAGTATCGTTTTAAGTTACACACGCGGCTGCATACCGGCGAGCAGCTGTACAGATGTGACATTTGCAATAAAGGCTATTCGGTGCGAGCTTTGTTTGTTAGACACAAACGATCGCACACCGGCGAACGTCCGTTCCAATGCGAAATATGCAGCAAACGTTTCACTGATGAATACTATCTGGGAATTCATACGAGAATACATACAGGGGATCAGAAGTACAAGTGCGATGTCTGTGGCAAAGGATATAGTTCAAATCACACTTTCGTGTCTCATATGAGTTCCCACACCGGCGAGCGGCCCTATAAATGCGACGTATGTGGCAAAGGATACAATAGGATCAGTTCGCTACGGTACCACAGTTCGGTACATATGACTGAACATCCCTTCAAGTGTGATACGTGCGGCAAAGAATTTTCCCTCAATGTACAGTTCAAGCGACATTTGAAAACTCATAGTGATGAACGTCTGTTTCGGTGCCACATTTGCGACAAAGGGTTCAGAATCAATTCCTTGCTGGTCCAACACGTACGTTGTCATACCGACGAACGACCCTACGAGTGTGAAACTTGCGGTTCATCGTTCAGTTCTGTTAGTAACCTTATAGCTCACCGGCGAAGCCATTCGAAACCAACGGAAAAAGCTTTCGAGTGTGGTTTGTGTGGAGCGAAGTTTTCTGTTAAAGGAAGTCTTACCTCTCACAGCATGGTACATTCTCGTGAACGGTTCCAGAAATGTTTCACCTGTGATATACAGTTTCTTACTAATGATGAGCTTAAGGAGCATAGGTTAGCCGTTCACAATGAACGACCTTACAAATGTTTGATGTGTGAGAAAGCTTTCTTCACCAATGGGAACCTGAGGGAACATCTGGTCGTTCACAGTGGCGAGAAACGGTTCAAGTGCCAGATTTGCGACAAGAGTTTTTCACGAACCAGTAATCTTAGTCGGCATGTACAGTTACACACCCGAGAAAAGACACTAGGATGTGAAATGTGTGAAGTGAACAATCCCGAAGATAATCGCCCCCCGTCGTTCAGCCGATGCGATCTAATACTCGCCGAATTGTTCTCTTTTTGTTCCAGCTATCCCAACGAGGAGCTGGCCGATCGAAACGGAACCGACCCGGGCAAGCCCATCAAATGCACCGTTTGCAGCAAACGATTCGCTAAAGTAAGCTATTTCAAACGGCACATGCGAATGCACACCGAGGAAGCGCCCCACCGTTGCGACACTTGCGGGAGAGGCTTTTTCGGGAGGGCCTTGCTGATGAGGCACCTAAAATTGCACACCGGCGAACGGCCGTTTCGATGCGAAATTTGCGGGAAAAGTTTTGCAAACGAACACTATCTGGGAATCCATATGAGAATGCATACCGGAGATCAAAAGTACAAGTGCGATATTTGTGGCAAAGGATATAGTTCCAAGTACGTGTTTGTTGTTCACATGCGATCCCACACCGGTGAGCGCCCGCACAAATGTGACGTTTGTGGTAAAAGCTTCAATAGCATGAAGTCGCTACAGTACCATAGTGCTGTTCATGCCAGTGAAAATAACTTTAAATGCGAAACGTGTGGCAAACAATATGCTCGCAATGCTCAGTTGAAGCGCCATTTGCAAAGTCATAGCAAAGAACGACGGTATCGATGTCACATTTGCGACAAAGGTTTCAGAATTAATGCCCAGCTGGTTCAACACATGCGCTGTCATGCTGAGGAACGTCCGTTCCGGTGCGAAATGTGCGGGAAAGACTTTTCAAACGAGCACAATCTGGAGACTCACATGAGAATGCACACGGGAGATCAGAAGTACAAGTGTGATGTTTGCGGCAAAGGAAGTAATTCAAAGAACAATTTTATCACTCACATGAGATCCCATACCGGCGAGCGGCCGCACAAATGCGATGTATGTGGTAAAAGCTTTGCCAAAATCTGTTCATTGCAGTATCACAGCTCGGCCCATTTGTCTGAACATCCATTTAAGTGCGACATTTGTGGCAAATCATATTCGCTCAATGTACAGCTGAAGCGACATTTGAGAATTCATAGGACAGAATCGTTGCATCGTTGCAGTATTTGTGACAAAGGATACACCGTTGAATCGGAGCTCGTTCAACATATGCGTCGGCATACGGGTGAACGGCCGTACGATTGTGATGTTTGCGGTGCATCGTTCGGTTTTCGTAGTAATCTTATAGTTCACCGTAGAGGTCACGGAAATCAAACTACGACGGAACAGTTTGacacgaacaccgttgagaAACGGCACAAGTGTCACGTTTGTGAGCAGACTTTCTCGCGTAAGGGTAATCTTACGCAACATGTGAAAATACACGCTCCCTCGGAAAGGATGGAACTCGTCACGCATTAA
Protein Sequence: MSDDELHGFEGETDDPREKDHGGSASGGDDDERILTLLMRHSDEEPDGVDGNDSILKKPTKCIICDQQFAKLCYFKRHMRTHTEGAPHRCDICGKGYIELSALKQHQFRHSDQRPHKCEICDKSFASKYRFKLHTRLHTGEQLYRCDICNKGYSVRALFVRHKRSHTGERPFQCEICSKRFTDEYYLGIHTRIHTGDQKYKCDVCGKGYSSNHTFVSHMSSHTGERPYKCDVCGKGYNRISSLRYHSSVHMTEHPFKCDTCGKEFSLNVQFKRHLKTHSDERLFRCHICDKGFRINSLLVQHVRCHTDERPYECETCGSSFSSVSNLIAHRRSHSKPTEKAFECGLCGAKFSVKGSLTSHSMVHSRERFQKCFTCDIQFLTNDELKEHRLAVHNERPYKCLMCEKAFFTNGNLREHLVVHSGEKRFKCQICDKSFSRTSNLSRHVQLHTREKTLGCEMCEVNNPEDNRPPSFSRCDLILAELFSFCSSYPNEELADRNGTDPGKPIKCTVCSKRFAKVSYFKRHMRMHTEEAPHRCDTCGRGFFGRALLMRHLKLHTGERPFRCEICGKSFANEHYLGIHMRMHTGDQKYKCDICGKGYSSKYVFVVHMRSHTGERPHKCDVCGKSFNSMKSLQYHSAVHASENNFKCETCGKQYARNAQLKRHLQSHSKERRYRCHICDKGFRINAQLVQHMRCHAEERPFRCEMCGKDFSNEHNLETHMRMHTGDQKYKCDVCGKGSNSKNNFITHMRSHTGERPHKCDVCGKSFAKICSLQYHSSAHLSEHPFKCDICGKSYSLNVQLKRHLRIHRTESLHRCSICDKGYTVESELVQHMRRHTGERPYDCDVCGASFGFRSNLIVHRRGHGNQTTTEQFDTNTVEKRHKCHVCEQTFSRKGNLTQHVKIHAPSERMELVTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -