Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:201292555-201314825[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 7.9e-06 0.00081 21.7 0.6 2 23 53 75 52 75 0.96

2 31 0.00047 0.047 16.2 1.1 1 23 81 103 81 103 0.97

3 31 0.00038 0.039 16.4 1.5 1 23 109 131 109 131 0.98

4 31 6e-06 0.00061 22.1 0.8 1 23 137 159 137 159 0.99

5 31 0.00034 0.034 16.6 1.5 1 23 165 187 165 187 0.98

6 31 2.1e-05 0.0021 20.4 1.7 1 23 193 215 193 215 0.97

7 31 2.6e-05 0.0026 20.1 2.2 1 23 221 243 221 243 0.93

8 31 0.0026 0.27 13.8 0.6 1 23 249 271 249 271 0.97

9 31 0.0008 0.082 15.4 2.7 1 21 277 297 277 299 0.96

10 31 0.16 17 8.1 1.8 1 21 305 325 305 327 0.95

11 31 8.2e-05 0.0083 18.5 0.5 1 23 335 357 335 357 0.98

12 31 1.9e-05 0.002 20.5 0.2 1 22 363 384 363 386 0.90

13 31 9.8e-06 0.00099 21.4 2.7 1 23 391 413 391 413 0.99

14 31 4.4e-05 0.0045 19.4 0.5 3 23 421 442 419 442 0.94

15 31 2.3e-05 0.0024 20.3 0.8 2 23 467 489 467 489 0.98

16 31 0.00031 0.031 16.7 2.5 1 23 495 517 495 517 0.98

17 31 0.00046 0.046 16.2 4.1 1 23 523 545 523 545 0.98

18 31 9.4e-05 0.0095 18.3 2.2 1 23 551 573 551 573 0.99

19 31 0.00086 0.088 15.3 1.3 1 23 579 601 579 601 0.97

20 31 2.4e-06 0.00025 23.3 0.6 1 23 607 629 607 629 0.98

21 31 0.00026 0.026 17.0 1.8 1 23 635 657 635 657 0.93

22 31 1.5e-06 0.00015 24.0 0.8 1 23 663 685 663 685 0.99

23 31 3.3e-07 3.3e-05 26.1 1.0 1 23 691 713 691 713 0.99

24 31 4.8e-05 0.0049 19.2 0.1 1 23 719 741 719 741 0.99

25 31 2e-06 0.0002 23.6 0.5 1 23 749 771 749 771 0.98

26 31 0.00046 0.047 16.2 1.7 1 23 777 800 777 800 0.95

27 31 8.2e-06 0.00083 21.7 1.9 1 23 805 827 805 827 0.99

28 31 2.1e-05 0.0021 20.4 0.9 2 23 851 873 850 873 0.97

29 31 2.2e-05 0.0023 20.3 1.3 1 23 879 901 879 901 0.97

30 31 0.00013 0.013 17.9 2.4 1 21 907 927 907 928 0.96

31 31 0.18 18 8.0 1.0 1 14 935 948 935 949 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	7.9e-06	0.00081	21.7	0.6	2	23	53	75	52	75	0.96
2	31	0.00047	0.047	16.2	1.1	1	23	81	103	81	103	0.97
3	31	0.00038	0.039	16.4	1.5	1	23	109	131	109	131	0.98
4	31	6e-06	0.00061	22.1	0.8	1	23	137	159	137	159	0.99
5	31	0.00034	0.034	16.6	1.5	1	23	165	187	165	187	0.98
6	31	2.1e-05	0.0021	20.4	1.7	1	23	193	215	193	215	0.97
7	31	2.6e-05	0.0026	20.1	2.2	1	23	221	243	221	243	0.93
8	31	0.0026	0.27	13.8	0.6	1	23	249	271	249	271	0.97
9	31	0.0008	0.082	15.4	2.7	1	21	277	297	277	299	0.96
10	31	0.16	17	8.1	1.8	1	21	305	325	305	327	0.95
11	31	8.2e-05	0.0083	18.5	0.5	1	23	335	357	335	357	0.98
12	31	1.9e-05	0.002	20.5	0.2	1	22	363	384	363	386	0.90
13	31	9.8e-06	0.00099	21.4	2.7	1	23	391	413	391	413	0.99
14	31	4.4e-05	0.0045	19.4	0.5	3	23	421	442	419	442	0.94
15	31	2.3e-05	0.0024	20.3	0.8	2	23	467	489	467	489	0.98
16	31	0.00031	0.031	16.7	2.5	1	23	495	517	495	517	0.98
17	31	0.00046	0.046	16.2	4.1	1	23	523	545	523	545	0.98
18	31	9.4e-05	0.0095	18.3	2.2	1	23	551	573	551	573	0.99
19	31	0.00086	0.088	15.3	1.3	1	23	579	601	579	601	0.97
20	31	2.4e-06	0.00025	23.3	0.6	1	23	607	629	607	629	0.98
21	31	0.00026	0.026	17.0	1.8	1	23	635	657	635	657	0.93
22	31	1.5e-06	0.00015	24.0	0.8	1	23	663	685	663	685	0.99
23	31	3.3e-07	3.3e-05	26.1	1.0	1	23	691	713	691	713	0.99
24	31	4.8e-05	0.0049	19.2	0.1	1	23	719	741	719	741	0.99
25	31	2e-06	0.0002	23.6	0.5	1	23	749	771	749	771	0.98
26	31	0.00046	0.047	16.2	1.7	1	23	777	800	777	800	0.95
27	31	8.2e-06	0.00083	21.7	1.9	1	23	805	827	805	827	0.99
28	31	2.1e-05	0.0021	20.4	0.9	2	23	851	873	850	873	0.97
29	31	2.2e-05	0.0023	20.3	1.3	1	23	879	901	879	901	0.97
30	31	0.00013	0.013	17.9	2.4	1	21	907	927	907	928	0.96
31	31	0.18	18	8.0	1.0	1	14	935	948	935	949	0.90

Sequence Information

Coding Sequence: atgggcccaggGATTACCTGTACGAGGGCTATTCGTCACAAATGCAGCAAAGTCGTTCAACCGAAATTTCTAATAGTCGACGAATTGTTCTCTTTTTGTTCCAGCCACTCGGAGGACGAGCCGGATCGTGATGGTACCGGTCTCGAAAAGCCCATCAAGTGTGACAATTGCGATCGACAATTCACTACAGTAGGCAACTTGAAGCGGCACATACGAAACATCCACAACGAAAACACATCTCACCGGTGCTACATTTGTGGGGAAATCTTTAGGCAGAGGATCTTACTCGTTAGACACAGAACAATTCATACCGCCGAACGGCCATTTCGCTGTGAAATATGTGACAAAGGTTTCACATGCCAACCCTCTTTGAACATTCATATGAAATTGCATACTGGAAATCACAACTACAAGTGCGATGTTTGTGGCAAAGGATACAGTTCAAAGAATAAATTAACGGATCATGTGAGATCTCATACAAGCGAGCGTCCGTACGAATGTGACATATGTGGAAAAACTTTTGCTAGCCAGTGCATCCTGAGAAATCATACGTTAAGACATGTTGCAAATCGCACGTTCAACTGCGATGTTTGTGGCAAAGGATTTATTACAAAATTCAACCTTGAGCATCACGAGAAATCTCACAGCACCGAACGCCCGTATAAATGTGACATATGTGGGAAAACCTTCAAGCATAGCTATGGGCTGCGGTATCACAGTGGAGTGCATATGGCTGAACATCCTTTCAAATGCAACCTTTGTGGCAAGGGATTTGCTTTCCTTGGGCTGCGCAATCAGCATCAGAAGGGACATAATGAGGCACGTCTGTTTCGGTGTAATGTTTGCAACAACAACTTCAGAAGTAATTCTCTCTTGGTCGCACACATGCGTTGTCACACTGAGGAACAACCATACAAATGTGAAATTTGCAGTGCTTTGTTTAAGTCCGCGTTTAACCTTGCCGGACACAAGAGATGTCACTTAAACCTAGCTTCAAACCCGTTCGAATGTGACATATGCGGAGCTAAGTTCCGCTATCGAAGAAATCTTAGTGCTCACAGCAAGGTTCATCGGCAGACACCGTTCTATGAATGCCCTAATTGTGACAAACAATTTCGCTCCTCTAGCGAGCTGGATAGGCACAGAGTAGCCATTCACAATGATCGACCGTACAGATGTACGATCTGTGACAAAGGCTGCACTACTATGTCGAACTTGCGGCAACATCTGAAAGTTCACACTGGCGTGATTCGGCTAGATTGCCGCATTTGCGAGCGGAGTTTTGCAAGGAAATCGAGTCTCAATAAACATGTAAAGGAAGTGCACGCTCAAGATAAGCCTCTCCACTGCTCCGACGACGAGCTGGATGGTCCTGATGGTACCGGTGTCGAACAGCCTAAATGCGACATTTGCGATCGACAATTCGCTAAGCTAGGTTTCCTGAAACGGCACATGCGAACCATCCACACCGAAGAACCGTCTCACCGGTGCGACATTTGCGGTAAAATCTATAGGCTTAGGATCTTATTCGAAAGGCATAGAAGAACGCATACCGGGGAACGACCGTTTCGCTGCGAAACGTGCGGCAAAGGTTTTACCTGTAAACCCTATTTGACCAAGCATATGAAATCGCACACTGGAAATTACAAATACAAGTGCGATGTTTGTGGCAAAGGATACAGTCCAAAGTGTAAGTTTGTGGACCACATGAGAACCCATACGGGCGAGCGTCCTTTCGAATGTGACATATGTGGAAAAAGTTTTGCTAGCCAGTGCATCCTCAGACTTCATACGTTAAGACATGCAGCGAGTCGCACCTTCAACTGCGATGTTTGTGGCAAAGGATTTACTACAAGAAGCACCCTTGTGAGTCACGTGAAAACCCATAGCATCGAGCGCCCACACAAATGTGACATATGTGGAAAGGCCTTCAAAAAGCTTTATTCGCTGCGGTATCACAGTGGAGTGCATATGGCTGAACATCCTTTCAAATGTGACATTTGTGGCAAGGGATTCTCTGTCCTTGAGCAGTTCAATCAGCATCAGAGAACTCATAATGAGGAATATCTGTATCGGTGTAATATTTGCAACAAAGAGTTCAGGAGTAATTCTCTTCTCGTCAATCACATTCGGTCTCATACCGGTGAACGGCCATACAAATGTGAAGTTTGCGGTTCTTCGTTTAGGGGTTCTAATGGCCTGGCAGCTCACATGAAAGTTCACTCAAACCTTGCATCAAACCCGTTCAAATGTGACATATGCGGAGCAACGTTCAGCCAACGAAGAAATCTTAACGTTCACAGTAGGGTTCATCGGCAGACACCGTTCCATGAATGTCCTAATTGTGACAAACAATTTCGCACCTTTAACGAGCTGGATAGGCATAGAGTAACCGTTCACAATGATCGACCGTACAAATGTACGATCTGTGACAAAGCGTCCACTACGTTCTCGAATTTTCGGCAACATCTGAGGGTTCACACTGGCGTGATTCGCCATCCCGACAACGCGCCGCCGGATAGTGATGATACCGGTTCCGACAATCCCAACAAATGCGACATTTGTGAACGACAATTCGTTACACTAGGCAACTTAAAACGGCACAAGCGAACCATTCACAACGAAGAAATATCTCACCGATGCTACATTTGCGGGCAAACCTTTGCACAGAGCAGTTTACTCGTAAGACACAGATCAATTCATACCGCCGAACGGTCGTTTCGTTGCGAAAAGTGCGGCAAAGGTTTCACAAGCAAACTCTGCTTGAACAATCATATGAAATTGAATACTGGAAATCACAACTACAAGTGCGATGTTTGTGGCAAAAAATACATTTCAAAAACGTCCGCGGATTACGTACGAAGACTCAAGGGAAATCGAAGCAATATTGTGACCGTCGATGCGATTTACCTACCACCGAATTCTGAGCTCGCTTTGTATGAACAGCATGCTGCCTGTGTCCATCGACTGTACGATCAAATCTGTACCAACGATAGGGTGATCGTTTTAGGCGACTATAATTTACCTCAGCTACGTTGGAGTTTCGATGACGAAGTTGGATGTTTTATTCCAATAAATGCCTCCTCGGAACATGAAACTTTGTTAGTCGAAACCATGATCGCTTCTGGTCTACAACAAGTGAACTATTTGACGAACGAGAATGGCAGGTTGCTTGATTTAGCGTTGTAG
Protein Sequence: MGPGITCTRAIRHKCSKVVQPKFLIVDELFSFCSSHSEDEPDRDGTGLEKPIKCDNCDRQFTTVGNLKRHIRNIHNENTSHRCYICGEIFRQRILLVRHRTIHTAERPFRCEICDKGFTCQPSLNIHMKLHTGNHNYKCDVCGKGYSSKNKLTDHVRSHTSERPYECDICGKTFASQCILRNHTLRHVANRTFNCDVCGKGFITKFNLEHHEKSHSTERPYKCDICGKTFKHSYGLRYHSGVHMAEHPFKCNLCGKGFAFLGLRNQHQKGHNEARLFRCNVCNNNFRSNSLLVAHMRCHTEEQPYKCEICSALFKSAFNLAGHKRCHLNLASNPFECDICGAKFRYRRNLSAHSKVHRQTPFYECPNCDKQFRSSSELDRHRVAIHNDRPYRCTICDKGCTTMSNLRQHLKVHTGVIRLDCRICERSFARKSSLNKHVKEVHAQDKPLHCSDDELDGPDGTGVEQPKCDICDRQFAKLGFLKRHMRTIHTEEPSHRCDICGKIYRLRILFERHRRTHTGERPFRCETCGKGFTCKPYLTKHMKSHTGNYKYKCDVCGKGYSPKCKFVDHMRTHTGERPFECDICGKSFASQCILRLHTLRHAASRTFNCDVCGKGFTTRSTLVSHVKTHSIERPHKCDICGKAFKKLYSLRYHSGVHMAEHPFKCDICGKGFSVLEQFNQHQRTHNEEYLYRCNICNKEFRSNSLLVNHIRSHTGERPYKCEVCGSSFRGSNGLAAHMKVHSNLASNPFKCDICGATFSQRRNLNVHSRVHRQTPFHECPNCDKQFRTFNELDRHRVTVHNDRPYKCTICDKASTTFSNFRQHLRVHTGVIRHPDNAPPDSDDTGSDNPNKCDICERQFVTLGNLKRHKRTIHNEEISHRCYICGQTFAQSSLLVRHRSIHTAERSFRCEKCGKGFTSKLCLNNHMKLNTGNHNYKCDVCGKKYISKTSADYVRRLKGNRSNIVTVDAIYLPPNSELALYEQHAACVHRLYDQICTNDRVIVLGDYNLPQLRWSFDDEVGCFIPINASSEHETLLVETMIASGLQQVNYLTNENGRLLDLAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -