Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:460619360-460643496[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 0.00019 0.019 17.4 1.6 1 23 94 116 94 116 0.99

2 32 1.7e-05 0.0018 20.6 0.8 2 23 122 143 122 143 0.98

3 32 2.9e-07 3e-05 26.2 1.2 1 23 203 225 203 225 0.99

4 32 0.0013 0.13 14.8 6.5 1 22 231 252 231 260 0.94

5 32 0.00027 0.028 16.9 4.1 1 23 266 288 266 288 0.97

6 32 0.05 5.1 9.8 1.1 1 23 294 316 294 316 0.94

7 32 0.0024 0.25 13.9 9.9 1 23 322 344 322 344 0.98

8 32 6e-07 6.1e-05 25.2 1.6 1 23 350 372 350 372 0.99

9 32 3.6e-07 3.7e-05 25.9 4.0 1 23 378 400 378 400 0.98

10 32 2.4e-06 0.00024 23.4 0.9 1 23 406 428 406 428 0.97

11 32 0.00051 0.052 16.0 1.9 1 23 434 456 434 456 0.99

12 32 5.2e-05 0.0052 19.2 2.9 1 23 462 484 462 484 0.98

13 32 0.002 0.21 14.1 4.3 1 22 490 511 490 519 0.94

14 32 0.0023 0.23 14.0 2.9 1 23 525 547 525 547 0.98

15 32 0.00013 0.014 17.9 2.7 1 23 553 575 553 575 0.98

16 32 0.00041 0.042 16.3 0.8 1 23 581 603 581 603 0.98

17 32 0.00057 0.058 15.9 0.6 1 23 609 631 609 631 0.99

18 32 2.6e-06 0.00026 23.3 1.1 1 23 637 659 637 659 0.99

19 32 0.016 1.6 11.3 4.5 1 23 665 687 665 687 0.98

20 32 2.4e-06 0.00024 23.4 2.1 1 23 693 715 693 715 0.99

21 32 8.8e-05 0.009 18.4 2.1 1 23 721 743 721 743 0.98

22 32 3.5e-06 0.00035 22.9 1.4 1 23 749 771 749 771 0.99

23 32 3.3e-05 0.0033 19.8 3.1 2 23 778 799 777 799 0.96

24 32 8.8e-05 0.009 18.4 2.1 1 23 805 827 805 827 0.98

25 32 4.2e-06 0.00043 22.6 1.7 1 23 833 855 833 855 0.99

26 32 3.1e-05 0.0032 19.8 2.7 2 23 862 883 861 883 0.96

27 32 0.00085 0.087 15.3 3.9 1 23 889 911 889 911 0.96

28 32 4.9e-05 0.005 19.2 0.6 1 23 917 939 917 939 0.98

29 32 7.1e-05 0.0072 18.7 2.2 1 23 945 967 945 967 0.98

30 32 9.1e-07 9.3e-05 24.7 1.1 1 23 979 1001 979 1001 0.98

31 32 8.1e-06 0.00082 21.7 2.1 1 23 1007 1029 1007 1029 0.98

32 32 3.2e-06 0.00032 23.0 2.4 1 23 1035 1057 1035 1057 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	0.00019	0.019	17.4	1.6	1	23	94	116	94	116	0.99
2	32	1.7e-05	0.0018	20.6	0.8	2	23	122	143	122	143	0.98
3	32	2.9e-07	3e-05	26.2	1.2	1	23	203	225	203	225	0.99
4	32	0.0013	0.13	14.8	6.5	1	22	231	252	231	260	0.94
5	32	0.00027	0.028	16.9	4.1	1	23	266	288	266	288	0.97
6	32	0.05	5.1	9.8	1.1	1	23	294	316	294	316	0.94
7	32	0.0024	0.25	13.9	9.9	1	23	322	344	322	344	0.98
8	32	6e-07	6.1e-05	25.2	1.6	1	23	350	372	350	372	0.99
9	32	3.6e-07	3.7e-05	25.9	4.0	1	23	378	400	378	400	0.98
10	32	2.4e-06	0.00024	23.4	0.9	1	23	406	428	406	428	0.97
11	32	0.00051	0.052	16.0	1.9	1	23	434	456	434	456	0.99
12	32	5.2e-05	0.0052	19.2	2.9	1	23	462	484	462	484	0.98
13	32	0.002	0.21	14.1	4.3	1	22	490	511	490	519	0.94
14	32	0.0023	0.23	14.0	2.9	1	23	525	547	525	547	0.98
15	32	0.00013	0.014	17.9	2.7	1	23	553	575	553	575	0.98
16	32	0.00041	0.042	16.3	0.8	1	23	581	603	581	603	0.98
17	32	0.00057	0.058	15.9	0.6	1	23	609	631	609	631	0.99
18	32	2.6e-06	0.00026	23.3	1.1	1	23	637	659	637	659	0.99
19	32	0.016	1.6	11.3	4.5	1	23	665	687	665	687	0.98
20	32	2.4e-06	0.00024	23.4	2.1	1	23	693	715	693	715	0.99
21	32	8.8e-05	0.009	18.4	2.1	1	23	721	743	721	743	0.98
22	32	3.5e-06	0.00035	22.9	1.4	1	23	749	771	749	771	0.99
23	32	3.3e-05	0.0033	19.8	3.1	2	23	778	799	777	799	0.96
24	32	8.8e-05	0.009	18.4	2.1	1	23	805	827	805	827	0.98
25	32	4.2e-06	0.00043	22.6	1.7	1	23	833	855	833	855	0.99
26	32	3.1e-05	0.0032	19.8	2.7	2	23	862	883	861	883	0.96
27	32	0.00085	0.087	15.3	3.9	1	23	889	911	889	911	0.96
28	32	4.9e-05	0.005	19.2	0.6	1	23	917	939	917	939	0.98
29	32	7.1e-05	0.0072	18.7	2.2	1	23	945	967	945	967	0.98
30	32	9.1e-07	9.3e-05	24.7	1.1	1	23	979	1001	979	1001	0.98
31	32	8.1e-06	0.00082	21.7	2.1	1	23	1007	1029	1007	1029	0.98
32	32	3.2e-06	0.00032	23.0	2.4	1	23	1035	1057	1035	1057	0.98

Sequence Information

Coding Sequence: ATGGAGCTTGTGAATGGACTTTCGACCTCAATTACGAAAGAAGAGGAAACTACCGAAGAAACCAACGTTACTGAACACCGTGAAGCAACAATTTCACCCAATGGgACTGATACTAACAGCAGTCTCTCAATACTGTCGGAATCACGGTGGGAGCTTAGGGATCAGATAGACATGTCTTCAAAGCAAAGGAAGCAAACCAACAGTGAGCTATGTGGACAAGCATCCCTTCAGAATTGTGCCCTGGAGCGAGTTGCGTTGACCGACATTGACAAGCGGTCGTACAAATGCGATATATGTAGCAAATCATTTAATAAGGAGAGTATTTTGAACAGACACAGAAAGATTCACAGTAATGAACAACCGCAATGTGAGATATGTGGCAAAGGATTCGTTCGGAAGTTTCACGTGGAGCAACATATGGCAACTCACACTGCACTTACTAACAGCAGTCTTTCAATATTGTCGGAATCACAGTGGGAGCTTAGCGATCAGATAGACATGTCTTCGAAGCAACGAAATCAAACCAACAGTGAGCTATGTGGACAAAAATCCCTTCAGAATTATCCCTTGGGGCGAGCTGTGTTGACCGACATTGACAAGCGGCCGTACCAATGTGATATATGTGACAAATCATTTAATAAGGAGAGTGATTTGAACAGACACAGAAAGATTCACAGTAATGAACGACAGCATAAGTGCGAGATATGTGGCAATGAATTCGTGCATAAGCATCACCTGAAGAATCATATGAGTACACTAACTTTGCACACAAAGAATCATAGTAATGAACAACCGCATAACTGTGAGATATGTGGCAAAGGATTCGTTCACAAGTGTCTGCTTATACAACATTTGTTAACTCACACTGGCAAGCGGCCGTACCTATGTGATATATGTGACAAATCATTTGCTGAGGATTGTATTTTGAATAGGCACAGAAAGATTCACAGTAATGAACGACAGCATAAGTGCAAGATATGTGGCAATGAATTCTTTCATAAGCATCACCTAAACCGTCATATGGTAACTCACAGTGCCGAGTGGCCATACAAATGCGAGATATGTGACAAAGGATTCGTTCAGAAGTCGCATATGAATGAACATATGCTAACTCACACTGGCGAGCGACCGTATAAATGTGACATATGTGACAAATCATTTAAACATCAGAGTGCACTAACTCGACACACAAAGAATCACAGTAATGAACAACCGCATAATTGTGAGATATGTGGTAAAGGATTCGTTCAGAAGAATCTGCTTATGAAACATATGATAACTCACACTGGCGAGTGGCCGTACAAATGCGAAATATGTGGCAAAGGATTCCTTAACAAGTGTCTGCTTATGCAACATTTGTCAACTCACACTGGCGAGCGGCCGCATAAATGCGAGATATGTGGTAAAAGATTCCTTCGGAAGTATCTGCTTATGAAACATATGGTAACTCACACTGGCGCGTGGCCGCACAAATGCGAGATATGTGACAAAGGATTCGTGAAGAAGTCGTGTATGAAAGAACATATGAGTACACTAACTTTACACACAAACAATCACAGTAATGAACAACTGCATAAATGTGAGATATGTGGCAAAGGATTCCTTCGGAAGTGTCTGCTTGAGCAACATGTGTTAACTCACACTGGCGATCGGCTGTACACATGCGAGATATGTGGCAAAGGATTCGTTAAGAAGTTTTGTATGAAACAACATATGGTAACTCACACTGGCGAGTTGTCGTTCAAATGCGAGATATGTGGCAAAGGATTCCTTCAGAAGTCGTTCATGAAAGAACATATGGTAACTCACACTGGCGAGTGGCCGTACAAATGCGAGATATGTGGCAAAGGATTGCTTCGGAAGTCGTATATGAAAGAACATATGCTAACTCACACAGGCGAGCGACCGTATAAATGTGATATATGTGGCAAAGGATTCCTTCAGAAGTATCTGCTTAAGCGACATATGTTAACTCATACTAGCGAGCGGCCGCACAAATGCGAGATATGTGGTAAAAGATTCCTTCAGAAATGTCGGCTTATGGATCATATGGTAACTCACACTGGCGAGTGGTCGTTCAAATGCGAGATATGTGGCAAAGGATTCGTTAATAAATCGTGTATGAAAGAACATATGCTAACTCACATTGGCGAGCGACTGCATAAATGTGATATATGTGGCAAAGGATTCCTTCAGAAGTATCGGCTTGAGCGACATATGTTAACTCATACTGGCGAGTGGCCGTACAAATGCGAGATATGTGGTAAAAGATTCCTTCGGAAATATCAGCTTATTAAACATATGGTAACTCACACTGGCGAGTGGCCGTGCGAATGTGAGATATGTGGCAAAGGATTCGTTAATAAATCGTGTATGAAAGAACATATGCTAACTCACATTGGCGAGCGAGTGCATAAATGTGATATATGTGGCAAAGGATTCCTTCAGAAGTATCGGCTTGAGCGACATATGTTAACTCATACTGGCGAGTGGCCGTACAAATGCGAGATATGTGGTAAAAGATTCCTTCGGAAATATCAGCTTATGAAACATATGGTAACTCACACTGGCGAGTGGCCGTGCGAATGTGAGATATGTGGCAAAGGATTCGTTGATAAATCGTGTATGAAAGATCATATGCTAACTCACACTGGCGAGCGACCGTATAAATGTGACATATGTGACAAATCATTTAAACATCAGCGTGCGCTAATTTTTCACACAAAGTATCACAGTAATGAACAACCGCATAAATGTGAGGTTTGTGGCAAAGGATACGCTCAGAAGAATTTGCTTGTGCAACATTTGTTAACTCACACTGGCGAGCGGCCGCACAAATGCGAGATATGTGGCAAAGGATTCGTTTACAAGTATCTGCTTATGCAACATTTTTCAACTCACACTGGCGAGCGATCTCATACTGGCGAGTGGTCGCACAAATGCGAGATATGTGGCAAAGGATTCCCTCAGAAGTATCTGCTTATGAAACATATGGTAACTCATACTGGCGAGTGGCCGCACAAATGCGAGATATGTGACAAAGGATTCGTGCAGAAGTCGACTATGAAACAACATATGGTAACTCACACTGGCGAGCGAGCGTATAAATGTGACATATGTGACAAATCATTTAAATATCAGAGTTCGCTATCTTTACACACAAAGAATCACAGTAATGAACAACAGCATTAA
Protein Sequence: MELVNGLSTSITKEEETTEETNVTEHREATISPNGTDTNSSLSILSESRWELRDQIDMSSKQRKQTNSELCGQASLQNCALERVALTDIDKRSYKCDICSKSFNKESILNRHRKIHSNEQPQCEICGKGFVRKFHVEQHMATHTALTNSSLSILSESQWELSDQIDMSSKQRNQTNSELCGQKSLQNYPLGRAVLTDIDKRPYQCDICDKSFNKESDLNRHRKIHSNERQHKCEICGNEFVHKHHLKNHMSTLTLHTKNHSNEQPHNCEICGKGFVHKCLLIQHLLTHTGKRPYLCDICDKSFAEDCILNRHRKIHSNERQHKCKICGNEFFHKHHLNRHMVTHSAEWPYKCEICDKGFVQKSHMNEHMLTHTGERPYKCDICDKSFKHQSALTRHTKNHSNEQPHNCEICGKGFVQKNLLMKHMITHTGEWPYKCEICGKGFLNKCLLMQHLSTHTGERPHKCEICGKRFLRKYLLMKHMVTHTGAWPHKCEICDKGFVKKSCMKEHMSTLTLHTNNHSNEQLHKCEICGKGFLRKCLLEQHVLTHTGDRLYTCEICGKGFVKKFCMKQHMVTHTGELSFKCEICGKGFLQKSFMKEHMVTHTGEWPYKCEICGKGLLRKSYMKEHMLTHTGERPYKCDICGKGFLQKYLLKRHMLTHTSERPHKCEICGKRFLQKCRLMDHMVTHTGEWSFKCEICGKGFVNKSCMKEHMLTHIGERLHKCDICGKGFLQKYRLERHMLTHTGEWPYKCEICGKRFLRKYQLIKHMVTHTGEWPCECEICGKGFVNKSCMKEHMLTHIGERVHKCDICGKGFLQKYRLERHMLTHTGEWPYKCEICGKRFLRKYQLMKHMVTHTGEWPCECEICGKGFVDKSCMKDHMLTHTGERPYKCDICDKSFKHQRALIFHTKYHSNEQPHKCEVCGKGYAQKNLLVQHLLTHTGERPHKCEICGKGFVYKYLLMQHFSTHTGERSHTGEWSHKCEICGKGFPQKYLLMKHMVTHTGEWPHKCEICDKGFVQKSTMKQHMVTHTGERAYKCDICDKSFKYQSSLSLHTKNHSNEQQH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -