Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058070.1:8446988-8449789[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 1e-06 0.0001 24.5 0.6 1 23 37 59 37 59 0.99

2 32 7.1e-05 0.0072 18.7 0.4 1 23 65 87 65 87 0.98

3 32 0.00025 0.026 17.0 2.0 1 23 93 115 93 115 0.98

4 32 0.00011 0.011 18.1 1.6 1 23 121 143 121 143 0.99

5 32 5.4e-06 0.00055 22.2 1.0 1 23 149 171 149 171 0.98

6 32 1.3e-06 0.00014 24.1 0.5 1 23 177 199 177 199 0.98

7 32 0.00013 0.014 17.9 1.6 1 23 205 227 205 227 0.98

8 32 1.3e-06 0.00013 24.2 1.1 1 23 233 255 233 255 0.99

9 32 0.0013 0.13 14.7 1.1 1 23 261 283 261 283 0.98

10 32 4.5e-05 0.0046 19.3 2.3 1 23 289 311 289 311 0.98

11 32 2.6e-05 0.0026 20.1 1.9 1 23 317 339 317 339 0.99

12 32 2.2e-07 2.3e-05 26.6 0.6 1 23 345 367 345 367 0.99

13 32 0.00035 0.035 16.6 0.1 1 23 373 395 373 395 0.98

14 32 0.0009 0.091 15.3 1.9 1 23 401 423 401 423 0.98

15 32 1.4e-07 1.4e-05 27.3 0.4 1 23 429 451 429 451 0.99

16 32 8.3e-07 8.5e-05 24.8 0.9 1 23 457 479 457 479 0.99

17 32 0.00065 0.066 15.7 0.2 1 23 485 507 485 507 0.97

18 32 0.00024 0.024 17.1 0.9 1 23 513 535 513 535 0.98

19 32 1.3e-06 0.00013 24.2 2.0 1 23 541 563 541 563 0.99

20 32 8.5e-06 0.00086 21.6 0.4 1 23 569 591 569 591 0.93

21 32 3.1e-05 0.0031 19.9 2.4 1 23 597 619 597 619 0.97

22 32 0.059 6 9.5 1.0 1 23 625 647 625 647 0.90

23 32 0.00037 0.038 16.5 1.2 1 23 653 675 653 675 0.99

24 32 0.00023 0.023 17.1 3.5 1 23 681 703 681 703 0.95

25 32 0.00019 0.02 17.3 1.8 1 23 709 731 709 731 0.95

26 32 0.0022 0.22 14.0 8.7 1 23 737 759 737 759 0.98

27 32 1.4e-05 0.0014 20.9 1.2 2 23 766 787 765 787 0.96

28 32 0.13 13 8.5 0.1 5 23 797 815 795 815 0.90

29 32 2.7e-05 0.0027 20.1 1.7 1 23 821 843 821 843 0.98

30 32 0.0022 0.22 14.0 8.7 1 23 849 871 849 871 0.98

31 32 1.3e-05 0.0013 21.1 1.5 2 23 878 899 877 899 0.96

32 32 1.5e-06 0.00015 24.0 1.3 1 23 905 927 905 927 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	1e-06	0.0001	24.5	0.6	1	23	37	59	37	59	0.99
2	32	7.1e-05	0.0072	18.7	0.4	1	23	65	87	65	87	0.98
3	32	0.00025	0.026	17.0	2.0	1	23	93	115	93	115	0.98
4	32	0.00011	0.011	18.1	1.6	1	23	121	143	121	143	0.99
5	32	5.4e-06	0.00055	22.2	1.0	1	23	149	171	149	171	0.98
6	32	1.3e-06	0.00014	24.1	0.5	1	23	177	199	177	199	0.98
7	32	0.00013	0.014	17.9	1.6	1	23	205	227	205	227	0.98
8	32	1.3e-06	0.00013	24.2	1.1	1	23	233	255	233	255	0.99
9	32	0.0013	0.13	14.7	1.1	1	23	261	283	261	283	0.98
10	32	4.5e-05	0.0046	19.3	2.3	1	23	289	311	289	311	0.98
11	32	2.6e-05	0.0026	20.1	1.9	1	23	317	339	317	339	0.99
12	32	2.2e-07	2.3e-05	26.6	0.6	1	23	345	367	345	367	0.99
13	32	0.00035	0.035	16.6	0.1	1	23	373	395	373	395	0.98
14	32	0.0009	0.091	15.3	1.9	1	23	401	423	401	423	0.98
15	32	1.4e-07	1.4e-05	27.3	0.4	1	23	429	451	429	451	0.99
16	32	8.3e-07	8.5e-05	24.8	0.9	1	23	457	479	457	479	0.99
17	32	0.00065	0.066	15.7	0.2	1	23	485	507	485	507	0.97
18	32	0.00024	0.024	17.1	0.9	1	23	513	535	513	535	0.98
19	32	1.3e-06	0.00013	24.2	2.0	1	23	541	563	541	563	0.99
20	32	8.5e-06	0.00086	21.6	0.4	1	23	569	591	569	591	0.93
21	32	3.1e-05	0.0031	19.9	2.4	1	23	597	619	597	619	0.97
22	32	0.059	6	9.5	1.0	1	23	625	647	625	647	0.90
23	32	0.00037	0.038	16.5	1.2	1	23	653	675	653	675	0.99
24	32	0.00023	0.023	17.1	3.5	1	23	681	703	681	703	0.95
25	32	0.00019	0.02	17.3	1.8	1	23	709	731	709	731	0.95
26	32	0.0022	0.22	14.0	8.7	1	23	737	759	737	759	0.98
27	32	1.4e-05	0.0014	20.9	1.2	2	23	766	787	765	787	0.96
28	32	0.13	13	8.5	0.1	5	23	797	815	795	815	0.90
29	32	2.7e-05	0.0027	20.1	1.7	1	23	821	843	821	843	0.98
30	32	0.0022	0.22	14.0	8.7	1	23	849	871	849	871	0.98
31	32	1.3e-05	0.0013	21.1	1.5	2	23	878	899	877	899	0.96
32	32	1.5e-06	0.00015	24.0	1.3	1	23	905	927	905	927	0.98

Sequence Information

Coding Sequence: ATGTCTTCGAAGCAACGGAAGCGATCCGAAAGTGATGTATGTGCACAAGAATCCCTTCGGAATCGTCTCCTGGGGCGACCTGTGTTAACCGATACTGATGCGCGGCCGTACAAATGCGAGATATGTGGCAAAGGATTCGTTCGGAAGTTTCTACTTGAGGAACATATGTTTACTCACACTGGCGAGCGACCGTACAAATGTGATATTTGtggaaaatcatttaatgcggAGAGTATTTTGAACAGGCACAGAAAAATTCACAGTGACGAACGACCGCATAAATGCGAGGTATGTAACAAAGGATTTCTTCAAAAGTATCTGCTTGAGCAACATATGCTAACTCACGCTGGCAAGTTGCAGTACAAATGCGAAGTATGTAgcaaaaaatttcttcaaaagtaTCTGCTTGAGCAACATATGTTAACTCACACTGGAAATTTGCCATACAAATGCGAAATATGTGGTAAAGGATTCGTTCGGAAGTTTCTGCTGGAGCAACATACGTTTACTCACGCTGGCGAGCGGCCTTACAAATGTGATATTTGTGGAAAATCATTTAGTGCGGAGAGTAGTTTGAACAGACACAGTAAAATTCACAGTCATGAACGACCGCATAAATGCGAGGTATGTGACAAAGGATTTCTTCAAAAGTATCTGCTTGAGCAACATATGTTAACTCACACTTGTGAGTTGCCGTACAAATGCGAAATATGTGGCAGAGGATTCGTTCAGAAGTGTCTGCTTGAGCGACATATATTAACTCACACTGGCGAGTGGCTGCACAAATGTGATATTTGCGGCAAACCGTTTAATGAGGAGAGAATTTTGAACAGGCACAGAAAAATCCACAGTGATGAACGACCGCATAAATGCGAGGTATGTGGCAAAAGATTTCTTCAAAAGTATCTGCTTGAGCAACATATGTTAACTCACACTGGCGAGTTGCCGTACAAATGCGAGATATGTGGTAAAGGATTCTTTCGGAAGTTGTCGTTTGAGCAACATATGTTTACTCACACTGGCGAGCGGCCGTACAAATGCGAAATATGTGGTAAAGGATTCGGTCGGAAGTTTCTGCTTGAGCGACATATGTTAACTCACACTGGCGAGCGGCTGTATAAATGTGATATTTGTGGAAAATCATTTATTGCGGAGGGTATTTTGAACAGACACAGAAAAATTCACAGTGATGAACGACCGCATAAATGCAAGGTATGTGACAAAGGATTTCTTCAAAAGTATCTGCTTGAGCAACATGTGTTAACTCACACTGACGAGTTGCCGTACAAATGCGAGATATGTGGTAAAGGATTCATTCAGAAGTTTTGGCTTGAGCGACATATGTTAACTCACACTGGCGAGCGGTCGTACAAATGCGAAATATGTGGTAAAGGATTCATTCGGAAGTTTCTGCTTGAGCAACATATGTTTACTCACACTGGCGAGCGGCCGTACAAATGTGATATTTGTGGAAAATCATTTATTGCGGAGGGTATTTTGAACAGACACAAAAAAATTCACAGTGATGAACGACCGCATAAATGCGAGGTATGTGGCAAAGGATTTCTTCAAAAGTATCCGCTTGAGCAACATATGTTAACTCACACTGGCGAGCGGTCGTACAAATGCGAGATATGTGGTAAAGGATTCGTTCGAAAGTTTTGCCTTGCGCGACATATGTTAAGTCATACTGGCGAACGGTTTTTCAAATGTGATATCTGTGGCAAATCGTTTAATGTGAAGAGTTACCTAAAGCTACATGTGGTAGCTCACACTGGCGATCGACCGTATAAATGTGATATATGTGAAAAATCATTTAACCGTCAGagtaatttaaattttcacaaaaaGATACACAGTAATGAACGACCGCATAAATGTAAGATATGTGGCAAAGGATTCCTTCAGAAGAAGCTGGTTGAACCACATATGGTAACTCACACTGGCGAGCGGCCGTATAAATGTGATATATGTGACAAATTATTTGCCCATCAGAGTATCTTAACTGTGCACAGAAAGATACACAATAATGAACGGCCACATAAATGCGAGATATGCGGCAAAGGATTCTTTCAGAAGTGCTTGCTTAAGCAACATATGGTAGCTCACACTGGTGAGCGGCCGTACAAATGTCATATATGTGACAAATCATTTGCCAGTCAGAGTATCTTAACTATGCACAGCAAGGGGCACAGTAATGAACGACCGCATAAATGCGAGATATGTGGCAAAGAATTCCTTCATAAGCATCACCTGAAGCGACATGTGTTAACTCACACTGGCGAGCGGCCGTGCAAATGTGATATATGTGACGAATCATTTGCCCAGCAGAGTACCTTAATTTTGCACAGAAAGATACACAATAATGAACGGCCACATAAAAGCGAGATATGCGGCAAAGGATTCTTTCAGAAGTGCTTGCTTGAGCAACATGTGGTAGCTCACACTGGTGAGCGGCCGTACAAATGTCATATATGTGACAAATCATTTGCCAGTCAGAGTATCTTAACTGTGCACAGGAAGGGGCACAGTAATGAACGACCGCATAAATGCGAGATATGTGGCAAAGAATTCCTTCATAAGCATCACCTGAAGCGACATGTGTTAACTCACACTGGCGAGCGGCCGTGCAAATGTGATATATGTGACGAATCATTTGCCCAGCAGAGTACCTTAATTTTGCACAGAAAGATGCACAATAATGAACGACCGCATAAATGCGAGATATGTGGCGAAGAATTCATTCAGAAGAATCAGCTGAAGCGACATATGGTAACTCACAGTGGCGAGAAGCCTAGATAG
Protein Sequence: MSSKQRKRSESDVCAQESLRNRLLGRPVLTDTDARPYKCEICGKGFVRKFLLEEHMFTHTGERPYKCDICGKSFNAESILNRHRKIHSDERPHKCEVCNKGFLQKYLLEQHMLTHAGKLQYKCEVCSKKFLQKYLLEQHMLTHTGNLPYKCEICGKGFVRKFLLEQHTFTHAGERPYKCDICGKSFSAESSLNRHSKIHSHERPHKCEVCDKGFLQKYLLEQHMLTHTCELPYKCEICGRGFVQKCLLERHILTHTGEWLHKCDICGKPFNEERILNRHRKIHSDERPHKCEVCGKRFLQKYLLEQHMLTHTGELPYKCEICGKGFFRKLSFEQHMFTHTGERPYKCEICGKGFGRKFLLERHMLTHTGERLYKCDICGKSFIAEGILNRHRKIHSDERPHKCKVCDKGFLQKYLLEQHVLTHTDELPYKCEICGKGFIQKFWLERHMLTHTGERSYKCEICGKGFIRKFLLEQHMFTHTGERPYKCDICGKSFIAEGILNRHKKIHSDERPHKCEVCGKGFLQKYPLEQHMLTHTGERSYKCEICGKGFVRKFCLARHMLSHTGERFFKCDICGKSFNVKSYLKLHVVAHTGDRPYKCDICEKSFNRQSNLNFHKKIHSNERPHKCKICGKGFLQKKLVEPHMVTHTGERPYKCDICDKLFAHQSILTVHRKIHNNERPHKCEICGKGFFQKCLLKQHMVAHTGERPYKCHICDKSFASQSILTMHSKGHSNERPHKCEICGKEFLHKHHLKRHVLTHTGERPCKCDICDESFAQQSTLILHRKIHNNERPHKSEICGKGFFQKCLLEQHVVAHTGERPYKCHICDKSFASQSILTVHRKGHSNERPHKCEICGKEFLHKHHLKRHVLTHTGERPCKCDICDESFAQQSTLILHRKMHNNERPHKCEICGEEFIQKNQLKRHMVTHSGEKPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -