Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:201322500-201332362[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 35 0.00023 0.023 17.1 0.2 1 23 10 32 10 32 0.99

2 35 0.00054 0.055 16.0 0.6 1 23 40 62 40 62 0.97

3 35 0.00028 0.028 16.9 0.5 1 23 68 91 68 91 0.96

4 35 3.6e-07 3.7e-05 25.9 1.2 1 23 96 118 96 118 0.98

5 35 0.00023 0.023 17.1 0.8 2 23 125 147 124 147 0.94

6 35 0.002 0.21 14.1 2.1 1 23 188 210 188 210 0.98

7 35 4.6e-06 0.00047 22.4 1.2 1 23 216 238 216 238 0.98

8 35 0.00011 0.011 18.1 2.5 1 23 244 266 244 266 0.98

9 35 0.00068 0.069 15.6 0.5 1 23 272 294 272 294 0.98

10 35 3.8e-05 0.0039 19.6 0.4 1 23 300 322 300 322 0.98

11 35 0.00032 0.032 16.7 1.3 1 23 328 350 328 350 0.92

12 35 1.8e-06 0.00018 23.8 0.7 1 23 356 378 356 378 0.99

13 35 1.3e-05 0.0013 21.1 1.0 1 23 384 406 384 406 0.99

14 35 4.2e-05 0.0042 19.5 0.4 1 23 412 434 412 434 0.98

15 35 0.0031 0.32 13.5 0.3 1 23 442 464 442 464 0.98

16 35 0.00075 0.076 15.5 0.9 1 22 470 491 470 493 0.89

17 35 0.06 6.1 9.5 0.5 1 11 498 508 498 512 0.88

18 35 3.7e-07 3.8e-05 25.9 1.8 2 23 528 549 527 549 0.98

19 35 3.5e-05 0.0036 19.7 0.2 2 23 557 578 557 578 0.97

20 35 0.00047 0.048 16.1 2.8 1 23 584 606 584 606 0.98

21 35 0.23 24 7.7 0.7 1 14 612 625 612 626 0.91

22 35 5.2e-06 0.00053 22.3 0.5 2 23 642 664 641 664 0.96

23 35 9.8e-06 0.001 21.4 2.1 1 23 670 692 670 692 0.98

24 35 1.1e-06 0.00011 24.4 0.5 1 23 698 720 698 720 0.98

25 35 4.1e-06 0.00042 22.6 0.2 1 23 726 748 726 748 0.99

26 35 1.9e-06 0.00019 23.7 0.3 1 23 754 776 754 776 0.98

27 35 0.0015 0.15 14.5 1.2 1 23 782 804 782 804 0.97

28 35 0.00078 0.08 15.4 1.5 1 23 810 832 810 832 0.92

29 35 1.5e-06 0.00016 24.0 0.8 1 23 838 860 838 860 0.99

30 35 2.3e-05 0.0023 20.3 0.9 1 23 866 888 866 888 0.98

31 35 0.00096 0.098 15.2 0.2 1 23 894 916 894 916 0.98

32 35 0.00039 0.04 16.4 3.3 1 23 924 946 924 946 0.98

33 35 0.0026 0.26 13.8 1.3 1 23 952 975 952 975 0.95

34 35 0.00081 0.082 15.4 0.7 1 23 980 1002 980 1002 0.98

35 35 8.1e-05 0.0083 18.5 3.7 1 23 1008 1031 1008 1031 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	35	0.00023	0.023	17.1	0.2	1	23	10	32	10	32	0.99
2	35	0.00054	0.055	16.0	0.6	1	23	40	62	40	62	0.97
3	35	0.00028	0.028	16.9	0.5	1	23	68	91	68	91	0.96
4	35	3.6e-07	3.7e-05	25.9	1.2	1	23	96	118	96	118	0.98
5	35	0.00023	0.023	17.1	0.8	2	23	125	147	124	147	0.94
6	35	0.002	0.21	14.1	2.1	1	23	188	210	188	210	0.98
7	35	4.6e-06	0.00047	22.4	1.2	1	23	216	238	216	238	0.98
8	35	0.00011	0.011	18.1	2.5	1	23	244	266	244	266	0.98
9	35	0.00068	0.069	15.6	0.5	1	23	272	294	272	294	0.98
10	35	3.8e-05	0.0039	19.6	0.4	1	23	300	322	300	322	0.98
11	35	0.00032	0.032	16.7	1.3	1	23	328	350	328	350	0.92
12	35	1.8e-06	0.00018	23.8	0.7	1	23	356	378	356	378	0.99
13	35	1.3e-05	0.0013	21.1	1.0	1	23	384	406	384	406	0.99
14	35	4.2e-05	0.0042	19.5	0.4	1	23	412	434	412	434	0.98
15	35	0.0031	0.32	13.5	0.3	1	23	442	464	442	464	0.98
16	35	0.00075	0.076	15.5	0.9	1	22	470	491	470	493	0.89
17	35	0.06	6.1	9.5	0.5	1	11	498	508	498	512	0.88
18	35	3.7e-07	3.8e-05	25.9	1.8	2	23	528	549	527	549	0.98
19	35	3.5e-05	0.0036	19.7	0.2	2	23	557	578	557	578	0.97
20	35	0.00047	0.048	16.1	2.8	1	23	584	606	584	606	0.98
21	35	0.23	24	7.7	0.7	1	14	612	625	612	626	0.91
22	35	5.2e-06	0.00053	22.3	0.5	2	23	642	664	641	664	0.96
23	35	9.8e-06	0.001	21.4	2.1	1	23	670	692	670	692	0.98
24	35	1.1e-06	0.00011	24.4	0.5	1	23	698	720	698	720	0.98
25	35	4.1e-06	0.00042	22.6	0.2	1	23	726	748	726	748	0.99
26	35	1.9e-06	0.00019	23.7	0.3	1	23	754	776	754	776	0.98
27	35	0.0015	0.15	14.5	1.2	1	23	782	804	782	804	0.97
28	35	0.00078	0.08	15.4	1.5	1	23	810	832	810	832	0.92
29	35	1.5e-06	0.00016	24.0	0.8	1	23	838	860	838	860	0.99
30	35	2.3e-05	0.0023	20.3	0.9	1	23	866	888	866	888	0.98
31	35	0.00096	0.098	15.2	0.2	1	23	894	916	894	916	0.98
32	35	0.00039	0.04	16.4	3.3	1	23	924	946	924	946	0.98
33	35	0.0026	0.26	13.8	1.3	1	23	952	975	952	975	0.95
34	35	0.00081	0.082	15.4	0.7	1	23	980	1002	980	1002	0.98
35	35	8.1e-05	0.0083	18.5	3.7	1	23	1008	1031	1008	1031	0.95

Sequence Information

Coding Sequence: ATGCGGATTCATACAGGTGAACGGCCATACAAATGTGAAGTTTGCGGTTCTTCGTTTAAGACTTCTAATGTCCTGGTAGGCCACATGAAAATTCACTCAAACCTAGCATCAAACCCGTTCGAATGTGATATATGCGGAGCAAAGTTCAGATATCGGAGAACTCTTAGCGTTCACAGTAAGGTTCATCGGCAGACACCGTTCCATGAATGTCCTAATTGTGACCAACAATTTCCCACCTCTAGAGAGCTGGATAGGCATAGAGCTACCGCTCACAATGATCGACCGTACAAATGTACGATCTGTGACAAAGGCTTCACTACCAGGTCGGGCTTGCGGAAACATCTGAAAGCTCACACTGACGTGATTCGGCTTAAATGCACCATTTGCGAGCAGAGCTTTGCTAAGAAAACGTTGCTTAATAGACATGTGAAGGAAATGCACGCTCAAATTAAACCCTGTGTAATCCACTCCGCCGACAATGAGCCAGATCGTGATGGCGCCGGTCTCGAAAAGCCCATCAAACGGCACATGCGAACCACCCGCACCGAGAAGAAAACATCTCACCGGTGCGACATTTGCGGGAAAACCTTAAAATGGAGTTACACACTCGAAAGTCATAGAAGAATGCATACCGGCGAACGACCGTTTCATTGCGAGATGTGCGGCAAAGATTTTGCCAGCAAAGGCTATCTGACCATTCATATGAGATTGCATACTGGAAATCACAAACACAAGTGCGATGTTTGTGGCAAAGGATACAGTACAAGGAATAAGTTTATGGAGCACGTGCGAACTCATACAGGCGAGCGCCCGTATGTATGTGACAtatgtggaaaaagttatttcaTCCAGACCCTTCTAAGACTTCATACGTTAAGACATGTAGCAAATCGCACGTACAACTGCGATGTTTGTGGCAAAGGATTTGCTACAAGAAACACTCTTATGAGTCACGGGAAAACCCATAGCAGCGAGCGCCCACACAAATGTGACATATGTGGGAAAACCTTCAAATATATCAGTGGGTTGCGGTATCACAGTGGAGTGCACATGGCTGAACAACCTTTCAAATGTGACATTTGTGGCAAACGATTCTCTATCCCTGAGCAGTTCAATCAACACCAGAGGATTCATAATGAGGCATGTCTGTATCAGTGTAAAGTTTGCAATAAAGAGTTCAAAAGTATGGCTTCCCTCGTCAATCACATGAGCCGTCACAGTGATGAACGGCCACACAAATGTGAAGTTTGCGGTTCTTCTTTCAAGACGCCTGATGTCCTGGCATCTCACATGAAAATTCACTCAAACGTATCATTCAACTCGTTCGAATGTGACATATGCGGAGCAAAGTACCGCCTACAAAGAACTCTTAACATTCACAGTAAGGTTCATCGGCAGACACCGTTCCATGAATGCCCTAATTGCGATAAACAATTTCGCACCACTCGAGAGCTGGATAGGCATAGAGTCGCCATTCACAATGATCGACCGTACAAATGTACGATCTGTGACAAGGCCTTCACTGCCAGACATTCCGAGGACGAGCCGGATCGTGATGGCACCGGTCTCGAAAAGCTCaacaaatgcaacatttgcggTCGTAAATTGGCTAATCGGAGCAATCTCAGACGGCACATGCGAACCCACACCGAAAATGCTTCTCAGCGCTCATGCGACATATGCGGAAAAATCATTGTGCGGAAGGACGATCTCGAAAGACATAGAAGAATGCATACCGGCGAACGGCCCTTTCGTTGCGAAATGTGTGGCAAAGGTTTTGCGTGCAAAACCTATCTGAATAGTCATATGAGATTACATACTGGAAATCATAACTACAAGTGCGATGTTTGTGGCAGAGGATACAGTTCCAACCACTCCGCCGACGAGCCGGATCGTGATGGTACCGGTCTCAAAAAACCCACCAAATGCGACATTTGCGATCGACGATTCGCTAAACTAGGAAACCTGACACGGCACATACGAAACATCCATACAGAGAAAAAAGTTCATCAGTGTGACATTTGCGGGAAAACCTTTAGTCGGAGTAACGTACTTGGAAATCATAGAAGAACGCATACCGGCGAACGACCATTTTCCTGCGAGATGTGCGGCAAAGGTTTTGCAAACAAAACCTATCTGACCATTCATATGAGATTGCATACCGGAAATCACAGCTACAAGTGCGATGTTTGTGGCAAAGGATACAGTTCAAAGTATGCATTAGCGGACCACGTGAGATCCCATACAGGCGAACGCCCGTACGTATGTGACAtatgtggaaaaagttatgCCAGCCAGAACCTCCTGAGAAAGCATACGATAACACATTTAGCAAATCTCCCGTTCAACTGCGATGTTTGTGGCAAAGGATTTACTACAAGAAAAACTCGTGTGAATCACGAGAAATCCCATAGCGTCGAACGCCCACACAAATGTGACATATGTGGGAAAACCTTCAAATATATCTATGGGCTGCGGTATCACAGTGGAGTGCATATGGCTGAACATCCTTTCAAATGTGACATTTGTGGCAAACGATTCTCTGTCCCTGAGCAGTTCAATTACCACCAGAGGATTCATAATGAGGCACGTCCGTATCGGTGTAATGTTTGCAATAAAGAGTTCAAAAGTAAGGCTGTCCTCGCCAATCACATGACCCGTCACAGTGATGAACGGCCGTACAGTTGTGAAGTTTGCGATTCTTCGTTCAAGACTTCCAATGTACTGGCAGGACACATGAAAATTCACTCAAACCTAGCATCAAACCCGTTCGAATGTGACGTATGCGGAGCAAAGTTCTGCCATCGAAGAAATCTTAACGTTCACAGTAAGGTACATCGGCAGACACCGCTCCATGAATGCCCGAGTTGTGACAAACAATTTCCCACCACTCGAGAGCTGGATAGGCATAGAGTAACCACTCACAATGATCGACCGTACAAATGTACGATCTGTGACAAGGTTTTCACGGCCATGTGGACGTGGCGGCAACATGAAAAACGTCATACTGGTGCGACCCGGCACCAATGTCACATTTGCGAGCGGACCTTTGCAAAGAAATCAGGCCTCAATAGACATGTAAAAGGAAAGCATGCTGGAGATAAATCTCTGTAA
Protein Sequence: MRIHTGERPYKCEVCGSSFKTSNVLVGHMKIHSNLASNPFECDICGAKFRYRRTLSVHSKVHRQTPFHECPNCDQQFPTSRELDRHRATAHNDRPYKCTICDKGFTTRSGLRKHLKAHTDVIRLKCTICEQSFAKKTLLNRHVKEMHAQIKPCVIHSADNEPDRDGAGLEKPIKRHMRTTRTEKKTSHRCDICGKTLKWSYTLESHRRMHTGERPFHCEMCGKDFASKGYLTIHMRLHTGNHKHKCDVCGKGYSTRNKFMEHVRTHTGERPYVCDICGKSYFIQTLLRLHTLRHVANRTYNCDVCGKGFATRNTLMSHGKTHSSERPHKCDICGKTFKYISGLRYHSGVHMAEQPFKCDICGKRFSIPEQFNQHQRIHNEACLYQCKVCNKEFKSMASLVNHMSRHSDERPHKCEVCGSSFKTPDVLASHMKIHSNVSFNSFECDICGAKYRLQRTLNIHSKVHRQTPFHECPNCDKQFRTTRELDRHRVAIHNDRPYKCTICDKAFTARHSEDEPDRDGTGLEKLNKCNICGRKLANRSNLRRHMRTHTENASQRSCDICGKIIVRKDDLERHRRMHTGERPFRCEMCGKGFACKTYLNSHMRLHTGNHNYKCDVCGRGYSSNHSADEPDRDGTGLKKPTKCDICDRRFAKLGNLTRHIRNIHTEKKVHQCDICGKTFSRSNVLGNHRRTHTGERPFSCEMCGKGFANKTYLTIHMRLHTGNHSYKCDVCGKGYSSKYALADHVRSHTGERPYVCDICGKSYASQNLLRKHTITHLANLPFNCDVCGKGFTTRKTRVNHEKSHSVERPHKCDICGKTFKYIYGLRYHSGVHMAEHPFKCDICGKRFSVPEQFNYHQRIHNEARPYRCNVCNKEFKSKAVLANHMTRHSDERPYSCEVCDSSFKTSNVLAGHMKIHSNLASNPFECDVCGAKFCHRRNLNVHSKVHRQTPLHECPSCDKQFPTTRELDRHRVTTHNDRPYKCTICDKVFTAMWTWRQHEKRHTGATRHQCHICERTFAKKSGLNRHVKGKHAGDKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -