Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058068.1:211909691-211919514[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 31 0.0025 0.25 13.9 0.4 2 20 112 130 111 133 0.93

2 31 1.9e-06 0.00019 23.7 0.4 1 23 139 161 139 161 0.98

3 31 0.00011 0.011 18.1 2.6 1 23 167 189 167 189 0.99

4 31 4.3e-05 0.0044 19.4 2.7 1 23 195 217 195 217 0.98

5 31 0.00026 0.026 17.0 5.8 1 23 223 245 223 245 0.98

6 31 5.3e-06 0.00054 22.3 2.0 1 23 251 273 251 273 0.99

7 31 1.3e-05 0.0014 21.0 0.9 2 23 280 301 279 301 0.97

8 31 1.1e-07 1.1e-05 27.5 1.1 1 23 307 329 307 329 0.98

9 31 2.8e-05 0.0028 20.0 2.1 1 23 335 357 335 357 0.99

10 31 7.3e-06 0.00074 21.8 2.2 1 23 363 385 363 385 0.97

11 31 1.3e-06 0.00013 24.2 2.2 1 23 391 413 391 413 0.98

12 31 4.9e-06 0.0005 22.4 0.6 1 23 419 441 419 441 0.99

13 31 0.0011 0.11 15.0 4.0 1 23 447 469 447 469 0.96

14 31 3.2e-06 0.00032 23.0 2.1 1 23 475 497 475 497 0.98

15 31 2.5e-07 2.5e-05 26.5 1.8 1 23 503 525 503 525 0.99

16 31 0.0019 0.2 14.2 0.5 1 20 531 550 531 553 0.94

17 31 1.6e-05 0.0017 20.7 1.0 3 23 682 702 680 702 0.97

18 31 2.4e-06 0.00024 23.4 0.3 1 23 708 730 708 730 0.98

19 31 0.0014 0.14 14.7 0.7 1 23 736 758 736 758 0.98

20 31 1.8e-05 0.0018 20.6 1.5 1 23 764 786 764 786 0.98

21 31 2.5e-05 0.0026 20.1 0.9 1 23 792 814 792 814 0.97

22 31 8.2e-06 0.00083 21.7 5.5 1 23 820 842 820 842 0.99

23 31 2e-06 0.0002 23.6 0.3 1 23 848 870 848 870 0.98

24 31 4.5e-07 4.6e-05 25.6 1.2 1 23 876 898 876 898 0.99

25 31 1.2e-05 0.0012 21.2 4.1 1 23 904 926 904 926 0.99

26 31 7.7e-05 0.0078 18.6 1.0 1 20 932 951 932 954 0.95

27 31 6e-07 6.1e-05 25.3 2.3 1 23 960 982 960 982 0.98

28 31 0.0057 0.58 12.7 2.1 1 23 988 1010 988 1010 0.98

29 31 2.2e-05 0.0023 20.3 2.9 1 23 1016 1038 1016 1038 0.99

30 31 4.8e-07 4.9e-05 25.6 1.0 1 23 1044 1066 1044 1066 0.98

31 31 6e-05 0.0061 18.9 0.5 1 23 1072 1094 1072 1094 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	31	0.0025	0.25	13.9	0.4	2	20	112	130	111	133	0.93
2	31	1.9e-06	0.00019	23.7	0.4	1	23	139	161	139	161	0.98
3	31	0.00011	0.011	18.1	2.6	1	23	167	189	167	189	0.99
4	31	4.3e-05	0.0044	19.4	2.7	1	23	195	217	195	217	0.98
5	31	0.00026	0.026	17.0	5.8	1	23	223	245	223	245	0.98
6	31	5.3e-06	0.00054	22.3	2.0	1	23	251	273	251	273	0.99
7	31	1.3e-05	0.0014	21.0	0.9	2	23	280	301	279	301	0.97
8	31	1.1e-07	1.1e-05	27.5	1.1	1	23	307	329	307	329	0.98
9	31	2.8e-05	0.0028	20.0	2.1	1	23	335	357	335	357	0.99
10	31	7.3e-06	0.00074	21.8	2.2	1	23	363	385	363	385	0.97
11	31	1.3e-06	0.00013	24.2	2.2	1	23	391	413	391	413	0.98
12	31	4.9e-06	0.0005	22.4	0.6	1	23	419	441	419	441	0.99
13	31	0.0011	0.11	15.0	4.0	1	23	447	469	447	469	0.96
14	31	3.2e-06	0.00032	23.0	2.1	1	23	475	497	475	497	0.98
15	31	2.5e-07	2.5e-05	26.5	1.8	1	23	503	525	503	525	0.99
16	31	0.0019	0.2	14.2	0.5	1	20	531	550	531	553	0.94
17	31	1.6e-05	0.0017	20.7	1.0	3	23	682	702	680	702	0.97
18	31	2.4e-06	0.00024	23.4	0.3	1	23	708	730	708	730	0.98
19	31	0.0014	0.14	14.7	0.7	1	23	736	758	736	758	0.98
20	31	1.8e-05	0.0018	20.6	1.5	1	23	764	786	764	786	0.98
21	31	2.5e-05	0.0026	20.1	0.9	1	23	792	814	792	814	0.97
22	31	8.2e-06	0.00083	21.7	5.5	1	23	820	842	820	842	0.99
23	31	2e-06	0.0002	23.6	0.3	1	23	848	870	848	870	0.98
24	31	4.5e-07	4.6e-05	25.6	1.2	1	23	876	898	876	898	0.99
25	31	1.2e-05	0.0012	21.2	4.1	1	23	904	926	904	926	0.99
26	31	7.7e-05	0.0078	18.6	1.0	1	20	932	951	932	954	0.95
27	31	6e-07	6.1e-05	25.3	2.3	1	23	960	982	960	982	0.98
28	31	0.0057	0.58	12.7	2.1	1	23	988	1010	988	1010	0.98
29	31	2.2e-05	0.0023	20.3	2.9	1	23	1016	1038	1016	1038	0.99
30	31	4.8e-07	4.9e-05	25.6	1.0	1	23	1044	1066	1044	1066	0.98
31	31	6e-05	0.0061	18.9	0.5	1	23	1072	1094	1072	1094	0.98

Sequence Information

Coding Sequence: ATGGAAGAGTCCCTGCAAATTAAGCTAGAAACAGAAGCTTTCGAACTAACGTTCGCTCAGAGCTCTGATAATGACAATACGATATTCGATAACCCAAAGGAAGAGGATATCGAATTcgataacaaaaataatagttttgATGTCTCAAATACGAGTTTTAGTACAGAGGAAAAGAGCAATCGACTGTCGGAAGACTCTGACGATTCCGAAAACAGCTATAATCCATCTGATCAAACcaaaaaaaatctcatgACCTCGTACGCTCCAGTCAACGTCCTCAGCAGTCAGCATGTGGTATCCCCCATTTCTATCAGTGATTCTACACGACTACTTGAATGCGAACTTTGCGGCAAGCGATTCACACGAAAGAGAAGACTAGTCGAGCACCTTTGGCAGCATACTGGCGAAGGGCCATTCAGTTGCGATATCTGTGGTAAGGTATTCTCCGGTAGAGTGGAACTTAGGAATCATCGGAATACCCACATTGGTAGGCGGCCGTACAAATGCACTCTGTGTGGCAGTGATTTTGTCTACAAAAGTTGTTTAACTAGACACATGCTCATTCATACGGATGAGCGGCCATACACATGCGAAGTGTGTGGCAAAGGTTTCACCCTTCAACACAAGCTGACTACGCACAGACGCCTTCATACGGACGAGCGACCGTACAAGTGCACTGTATGCGACAAAAGTTATATCCACAAATGTAGTCTGACATCGCACATGTTTATTCATACGAAAGACTGGCGATACAAGTGCACCGAGTGTGGTAAAGGTTTCAATGATCATTTTACGCTGAATACACACATGCTCGTTCATACTGGTGAGTCACCAATTAAGTGCAAAATTTGTGACAAAGATTTTCCTAACCAGCAGAAGCTGGCCAAACACATGTTCACTCATACGGGCGACAAGCCGTACATGTGCAACGTTTGTGGCAAAGATTTTACCAACAAATATGAGTTGATCACACACATGCGTCGTCATACAGGCGAGCGGCCATTTAAGTGCAACATTTGTGGCAAAGGTTTTATACACAAAGGAAATCAGATCACACACCAGCAACGTCATACGGAAGAGCGACCGCACAAATGCTCCGTGTGTGGCAAAAGTTATTCCCTCAAATATAATCTGACTGTACACATGTATGTTCATACGGGCGAGCGCCCTTTCAAATGCACCGAGTGTAGCAAAGATTTTAACAACAAAAGTACCCTGACCAAACACATGCTCGTTCATACGGGTAAGCGACCATACAAGTGCGACATGTGTGGTAAAGATTTTATCCACGAGAAGGGCCTAATCGCACACATGCGCCTTCATACTGGTGAGCGGCCATACAAATGCACTTTCTGTGAAAACAGTTATGCCCACAAATCTAATCTAACTACACACATGTTCGATCACACGGGAGAGCGACCGTTCAAGTGTACCGAGTGTAGCAAAAGTTTTACCGACAATTATAAGCTGACCTCACACATGATCCTGCATACGGGCGAGCGGCCGTACAAATGCACTTTATGTGACAAGGATTTTACCAACCAACAAAACCTGACCAGACACATTAACATGCATACGAATGACCGTCCGTATAAGTGTGTTTCGTGTGATAAAGCTTTTATGTTCCAAAGCCAGCTGGACAAACATATGCCCGTTCATACTGAAATCTATCGATATAATCTTAATATGGATATGGAAGAGTTCTTGAAAATCAAGCCAGAAACAGACTTCGGTCTAACAGATGCTCAGTGCTCCAATGATGCCAATCGTATATTTGACAAGGTAGAGCAAGACGATGCCGATACAAATAAAACATCCGATATCAAAACTCATGATTTCGATTTCTCAAATGCGAGTACTGGGCCACAGGAAAAGAGTACTCGACTGTCGGAAGGTTCTGGCATCGAGCACGATTCCATCAGCTATAATTCATCTGATCAAACCGAAAGAAATATCGTGGATCCCGATGCTGAAGGCGACGACTTGAGCAATCCGCAGATAGTATCCCCCATTTCAACCACCGATACCACACTACCATATGGATGCGAAGTATGTGGCAAGCGGTTCATCCAGAAGTATAAACTAAACAAGCACTTCAGGGTACACAGCAGTAAACGACCTTTCAGTTGTGATGTATGTGGTAAGGCATTCCCCAGTAGAGCAGATTTCACGAATCATCAGAATACCCACAGCGGTAAGCGACCGTACAAATGCACTGTGTGTGGCGACGATTTTGTCTACAAAAATAGTTTAAACAGACACAAGCTCGTTCATACGGGTGAGCGGCCACATAAATGCGACTTGTGTGACAAAAGTTTTGCCGTCCAAAGCAAGCTGACCTTACACATGACCATTCATACAGATGAGCGGCCATACCAATGTATTGAGTGTGACAAAAGTTTTATCAGAAAATCTAGTCTGGCTACGCATATGTTCAGTCATACGGGCGAGCGACCATACAAGTGCACCGAGTGCAACAAATGTTACAAAGACAAATATACGCTGAACACACATATGCTAAGTCATAAGAATGATCGTCCATACAAGTGTGATGCGTGTGGCAAAGATTTTGCTCGCAAAAAGAACTTGAACATCCACATGCTCGTACATGCGAATGATCGGCCATACAAGTGCGATACGTGTGGCAAAGATTTTAcccgcgaaacgagtctgatcaAACACATGCGCCTTCACACGGGCGAGCGGCCATACAAATGCAACATGTGTGGCAaaaattttacagaaaaatgTCAGTTGACAACACACATACGTCTTCACACGGGCGAGCGGATATTCAAGTGCAATGTGTGTGGCAAAGATTTTCCCTACAAATTTCAGCTGACCACACATATGCCCCTTCATACGGGTGAGCGACCTCACAAGTGTGATGTGTGTGGCAAAGATTTTAGCCAACGAAAGAACCTGAAGAACCACATGCTGATACATTCGGATGGGCTACCGTACACATGCAGCGTGTGTGGCAAAGATTGTATCAGCCAACGGATCCTGACCAACCACATGTTTACTCATTCGGGTGAACGGCCTTACAAATGCACTGAGTGTGGCAAAGGTTTTACCGAAAAATGTTTCCTGAACATACACATGCGCCTTCACACGGGCGAGCGGCCATACAAGTGCAACGTGTGTGACAAAGATTTTACCCGCCAGCAGAGTCTAAACAGACATATGGTTGTTCATACGGGCGATCGGCCGTACAAATGCACCGAGTGTGGTTTAAAATTTGCTGAAAAATATCGGCTGACCGCACACATGCTCCTGCATATGGGTTAA
Protein Sequence: MEESLQIKLETEAFELTFAQSSDNDNTIFDNPKEEDIEFDNKNNSFDVSNTSFSTEEKSNRLSEDSDDSENSYNPSDQTKKNLMTSYAPVNVLSSQHVVSPISISDSTRLLECELCGKRFTRKRRLVEHLWQHTGEGPFSCDICGKVFSGRVELRNHRNTHIGRRPYKCTLCGSDFVYKSCLTRHMLIHTDERPYTCEVCGKGFTLQHKLTTHRRLHTDERPYKCTVCDKSYIHKCSLTSHMFIHTKDWRYKCTECGKGFNDHFTLNTHMLVHTGESPIKCKICDKDFPNQQKLAKHMFTHTGDKPYMCNVCGKDFTNKYELITHMRRHTGERPFKCNICGKGFIHKGNQITHQQRHTEERPHKCSVCGKSYSLKYNLTVHMYVHTGERPFKCTECSKDFNNKSTLTKHMLVHTGKRPYKCDMCGKDFIHEKGLIAHMRLHTGERPYKCTFCENSYAHKSNLTTHMFDHTGERPFKCTECSKSFTDNYKLTSHMILHTGERPYKCTLCDKDFTNQQNLTRHINMHTNDRPYKCVSCDKAFMFQSQLDKHMPVHTEIYRYNLNMDMEEFLKIKPETDFGLTDAQCSNDANRIFDKVEQDDADTNKTSDIKTHDFDFSNASTGPQEKSTRLSEGSGIEHDSISYNSSDQTERNIVDPDAEGDDLSNPQIVSPISTTDTTLPYGCEVCGKRFIQKYKLNKHFRVHSSKRPFSCDVCGKAFPSRADFTNHQNTHSGKRPYKCTVCGDDFVYKNSLNRHKLVHTGERPHKCDLCDKSFAVQSKLTLHMTIHTDERPYQCIECDKSFIRKSSLATHMFSHTGERPYKCTECNKCYKDKYTLNTHMLSHKNDRPYKCDACGKDFARKKNLNIHMLVHANDRPYKCDTCGKDFTRETSLIKHMRLHTGERPYKCNMCGKNFTEKCQLTTHIRLHTGERIFKCNVCGKDFPYKFQLTTHMPLHTGERPHKCDVCGKDFSQRKNLKNHMLIHSDGLPYTCSVCGKDCISQRILTNHMFTHSGERPYKCTECGKGFTEKCFLNIHMRLHTGERPYKCNVCDKDFTRQQSLNRHMVVHTGDRPYKCTECGLKFAEKYRLTAHMLLHMG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -