Tyan013688.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Topomyia yanbarensis
Gene Symbol
-
Assembly
GCA_030247195.1
Location
CM058068.1:201388311-201397124[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 1.5e-05 0.0015 20.9 1.1 2 23 41 63 40 63 0.97
2 41 4.1e-07 4.2e-05 25.8 3.6 1 23 69 91 69 91 0.98
3 41 0.021 2.1 10.9 1.0 1 23 97 119 97 119 0.98
4 41 0.011 1.1 11.9 1.8 1 23 125 147 125 147 0.99
5 41 5.2e-05 0.0053 19.1 0.3 1 23 153 175 153 175 0.98
6 41 0.0015 0.15 14.6 0.4 1 23 181 203 181 203 0.93
7 41 0.00081 0.082 15.4 2.5 1 23 209 231 209 231 0.92
8 41 3.5e-05 0.0035 19.7 1.0 1 23 237 259 237 259 0.99
9 41 0.26 27 7.5 7.8 1 21 265 285 265 287 0.95
10 41 0.00026 0.026 17.0 0.1 1 23 293 315 293 315 0.99
11 41 1.5e-05 0.0016 20.8 0.2 1 23 323 345 323 345 0.98
12 41 0.087 8.9 9.0 1.9 1 23 351 374 351 374 0.96
13 41 6.8e-06 0.00069 21.9 1.0 1 23 379 401 379 401 0.99
14 41 0.00036 0.037 16.5 2.8 2 23 408 430 407 430 0.92
15 41 3.5 3.6e+02 3.9 0.4 14 23 451 461 447 461 0.88
16 41 2.1e-05 0.0021 20.4 6.5 1 23 466 488 466 488 0.98
17 41 0.0028 0.29 13.7 4.2 1 23 494 516 494 516 0.97
18 41 0.00011 0.011 18.1 1.6 1 23 522 544 522 544 0.99
19 41 0.00019 0.019 17.4 0.5 1 23 550 572 550 572 0.96
20 41 0.00035 0.036 16.5 1.8 1 23 578 600 578 600 0.96
21 41 0.00023 0.024 17.1 2.1 1 23 606 628 606 628 0.92
22 41 0.0015 0.16 14.5 2.9 1 23 636 658 636 658 0.98
23 41 0.00054 0.055 15.9 2.2 1 23 664 686 664 686 0.98
24 41 2.7e-06 0.00027 23.2 0.3 1 23 692 714 692 714 0.99
25 41 0.00014 0.014 17.8 0.8 2 23 723 744 722 744 0.96
26 41 0.05 5.1 9.8 1.2 1 23 750 773 750 773 0.95
27 41 2e-06 0.0002 23.6 0.9 1 23 778 800 778 800 0.99
28 41 2e-05 0.002 20.5 2.5 2 23 807 829 806 829 0.95
29 41 2.4e-05 0.0025 20.2 2.1 2 23 931 953 930 953 0.97
30 41 0.00068 0.069 15.6 6.7 1 23 957 979 957 979 0.98
31 41 0.00029 0.029 16.8 3.8 1 23 985 1007 985 1007 0.97
32 41 3.3e-05 0.0034 19.8 0.3 2 23 1014 1035 1013 1035 0.97
33 41 0.00013 0.013 17.9 3.6 1 23 1041 1063 1041 1063 0.97
34 41 0.00088 0.09 15.3 0.1 1 23 1069 1091 1069 1091 0.98
35 41 0.00037 0.038 16.5 1.2 1 23 1097 1119 1097 1119 0.92
36 41 9.4e-08 9.5e-06 27.8 1.4 1 23 1131 1153 1131 1153 0.99
37 41 0.0053 0.54 12.8 1.2 1 21 1159 1179 1159 1181 0.96
38 41 0.0002 0.02 17.3 1.4 1 23 1189 1211 1189 1211 0.95
39 41 2.5e-05 0.0025 20.2 0.4 1 23 1217 1240 1217 1240 0.97
40 41 4.5e-07 4.6e-05 25.6 2.2 1 23 1245 1267 1245 1267 0.99
41 41 3e-05 0.0031 19.9 2.6 1 23 1273 1296 1273 1296 0.95

Sequence Information

Coding Sequence
ATGTACAAGCTTCTTAATATGACTAGTGGCGCCATCATATTGAGTGCGGCGTTTCTGCACACTAACATCCACTCGGACGACGAGCCGGATCGTGATGGTACCGGTCTCGGCAAGCCCACCAAATGCGATATTTGCGGTCGACAACTCGCTACACTAGGCCACTTAAAACGGCACATGCGAACCGTCCACACCGAAAACCCAGTCCACCGGTGCGATATTTGCGGGAAAGCCTTTCGGCGCAGTAATTTACTCAAAAGGCACAGAAGAACGCATACCGGCGAACGGCCGTTCCGTTGCGAAACGTGTGGCAAAGCTTTGGCATGCGAACGTTCTCTGGCCAGACATATGAAATTACATACTGGAAATCACAGCTACAAGTGCGATGTTTGTGGCAAAGGATACAGTTTGATGTGTACGTTTATGGACCATGTGAGATCCCATACAGGCGAGCGCCCGTTCGAATGTGACATATGCGGTAAAGGGTTTGGTAGCAAGACCCTCCTGCGACTGCATACGCTAAGACATACAACAATGGGCATGTTCAAGTGCGATATTTGTGGCAAACGATTTGCTACTAGAAGCATCCTTGTGGGTCACGAAAAATACCATAGTATCGAGCGCCCACACACATGTGACATATGTGGCAAAACCTTCAAACATATATATGCGCTACGTTATCACAGTGGAGTGCATATGGCTGAACATCCTTTCAAATGTGACATTTGTAGCAAAGGATTTGCTTTTCTTAGGCAGCTCAACCAACATCAGAGGATTCATAATGAGGCACGTCTGCATCGGTGTAATGTTTGCAACAAAAAGTTCAGATGTAATGCTCTGCTTGTCCGACACATGCGGTGTCATACTGGTGAACGGCCATATAAATGCGAAGTTTGCGGTTCTTCGTTTAGAGGTTCTAATGGCCTGGTAGGGCACATGAGAATTCACTCAAACCTAGCATCAAACCCGTTCGAATGTGACATATGCGGAGCAACCTTCAGCCAACGAAGAAATCTTAGCGCTCACAGTAAGGTTCATCAGCAGACACCGTTCCATGAATGCTCTAATTGTGACAAACAATTTCTTACCACTAGGGAGCTGGATAGGCATAGAATTACCATTCACAATGATCGGCCGTACAAATGTACGATCTGTGACAAAACTGCCACCACAATGTCCAACTTGCGGCAACATCTGAAAGTGCACACAGGCGTGCCTCGGCTTAAATGTCACAATTGCGAGCAGACCTTTACTAGGAAAGCAAAACTTAAGAAACATGTGGAAGAAATGCACGCTCAAGATAAGTCCCTCCATTCCGATGACGAGCAGGATGGTGATGGTACCGCTAAACTGCGCAACTTAGAACAACACATGCGAACCGAACACGAAACATCATCTCACCGGTGCGACATTTGCGGGAAAATCTTTAGACATAGGAAGTCACTCAAAAGACATACCAAAATGCATACCGGCGTACGGACGTTCTGTTGCGAAATATGTGGCAAAGGCTTTGCATGCCAAACCTATCTGAACAGGCATACGAGAGTGCATACTGGAATTCACAACTACAAGTGCGATGTTTGTAGCAAAGGATACAGTTCAAAGTCTAAGTTTATGGACCATGTCAGATCCCATACAGGCGAGCGCCCGTATGTATGTGACATATGTGGAAAATGTTTCGCTACCCAGCCCATTCTGAGACGTCATACGTTAGGACATTTAGCAAATCGCACGCACAACTGTGACGTTTGTGACAAAGGATTTACTACAAGAGACGTCCTCGTGCGTCACAAGAAATCCCATAGTATCGAACGCCCACACAAATGTGACATATgtggaaaaagtttcaaaaatGACTATTCGTTGCGGTATCACAGTGGAGTGCATATGAGTGCATATGAACATCCTTTCAAATGTGACATTTGTAGCAAGAAATTTGCTTTTCTTAAGCAGTTCAATGACCATCTGAAATATCATAGTGACGCACGTCCGCATCGATGTAATGTTTGCGCCAAAGAGTTCAGACTTAAATCTTTTCTCGTCACACACATGCGAATTCATACTGGTGAACGGCCATACAAATGTGAAGTTTGCGGTTCGTCGTTCAAGACTTCTGATGGCCTGGTAAAGCACATGCAAATTCACTCAAACCTAGCATCAAACCTGTTGGAATGTGACATATGCGGAGCAAAGTTCAGCCGACGAACACATCTTAGCGCTCACAGTAAGGTTCATCGGCAAACACCGTTTCACGAATGTCCTAATTGTGACAAACAATTTCTCACCACTAGAGAGCTGGATAGGCATAGAGTTACCGTTCACAATGATCGACCGTACAAATGTTCGATCTGCGACAAAAGCGTCACCACCATGTCCAACTTACGGCAACATCTGAAAGTTCATACTGGCGTGATTCGAGTCAAATGTCACATTTGCGAGCAGAGTTTTACAAAGAATTCAAACCTCACTAAACATGTAAAAGAAATGCATGCTCAAGATAAATGCCGCATCTTCTCGGGATTCGCTTTCGGAATTTATTTTCTGGAGCACGGCTGTCGGGTAGCAGACGAACAACACAGTGGGGAGAGACAGAAGTACATCGCAATCGCTTCCAGCGGTGCAGTTCGAATGTTGGATGCGAAAGGTCGGCGGTGGAAGGGCACAGAACGTGTGAACTCGAAGGGGCTGACAACCAGCCCTCGACAAGGTGGTATACATCGCGCCAGCATCTCATCCACTTGGCACTCCGACGCCGAGCCGGATCGTGATGGTACCGGTCTCGAAAAGCCCATCAGATGCGACATTTGCGATCGACAATTCACTAAACTGCGCTACCTAAAACGACACATGCAAACCAAACACGAAACATCTCACCGGTGCGACATTTGCGGGAAAATCTGCTCGCACAGAAACTTACTCGTAAGACATAAAAGAACTCATACAGGCGAACGGCCGTTTGATTGCGAACTATGCGGTAAAGGTTTCACATGCAAAACCTATCTGAATAGGCATATGAAAACGCATACTGGAAATTACAACATCAAGTGCGATGTTTGTGGCAAAGGATACAGTACAAAACGTAAATTAGTGGCACACGTGAGATCCCATACAGGTGAGCGCCCGCACAAATGTGACATATGTGGAAAATGTTTTGCTAGCCAGATCTACCTGGAAAGTCACTCGCAAAGGCATCCAGAAAATCACAAATACAACTGCGATGTTTGTGGCAAAGGATATAGTACAATAGCCATGCTAACGCTTCACGAGAAATCTCATAGCATCGGGCGCCCACACAAATGTGACATATGTGGGAAAACCTTCAAATATATCTCTGGATTGCAGTATCACAGTGGAGTGCATATGGCTGAACATCCTTTCAAATACGAACGTCTGTATCGGTGTAATGTTTGTAACAAAGAATTCAGAAGTAATTCTGAGCTCGTCAGACACATGCGGTCTCATACTGGTGAACGGCCATACAAATGTGAAATTTGCGGTTCTTCGTATAAGATATCTAATACCCTCGCAGCCCACATGAGATGTCACTCGAACCTATCATCAAACCCGCACGAATGTGACATATGTGGAGCAAAGTTCAGTCAAAAACAACACCTCACCGTTCACAGTGCTGTTCATCGGGAGGAACAGTTCTATCGATGCGCTGATTGTGACAAACAGTTTCCTACCTCTAGAGAGCTGGAGAAGCATAGAGTTACCATACACAAAGATCGACCCTACAAATGTACGATCTGTGACAGAGCGTTCTTCAGCCAATCACACCTGCGGGCACATCTGAGGGTTCACAATGGAGTGATTCGGTTCGAATGTCACATTTGTGAGCAGAGCTTTACAAAGAATACGAACCTCACTAAACATGTAAAGGAAATGCACGCTCAAGATAAACGCCAGTAA
Protein Sequence
MYKLLNMTSGAIILSAAFLHTNIHSDDEPDRDGTGLGKPTKCDICGRQLATLGHLKRHMRTVHTENPVHRCDICGKAFRRSNLLKRHRRTHTGERPFRCETCGKALACERSLARHMKLHTGNHSYKCDVCGKGYSLMCTFMDHVRSHTGERPFECDICGKGFGSKTLLRLHTLRHTTMGMFKCDICGKRFATRSILVGHEKYHSIERPHTCDICGKTFKHIYALRYHSGVHMAEHPFKCDICSKGFAFLRQLNQHQRIHNEARLHRCNVCNKKFRCNALLVRHMRCHTGERPYKCEVCGSSFRGSNGLVGHMRIHSNLASNPFECDICGATFSQRRNLSAHSKVHQQTPFHECSNCDKQFLTTRELDRHRITIHNDRPYKCTICDKTATTMSNLRQHLKVHTGVPRLKCHNCEQTFTRKAKLKKHVEEMHAQDKSLHSDDEQDGDGTAKLRNLEQHMRTEHETSSHRCDICGKIFRHRKSLKRHTKMHTGVRTFCCEICGKGFACQTYLNRHTRVHTGIHNYKCDVCSKGYSSKSKFMDHVRSHTGERPYVCDICGKCFATQPILRRHTLGHLANRTHNCDVCDKGFTTRDVLVRHKKSHSIERPHKCDICGKSFKNDYSLRYHSGVHMSAYEHPFKCDICSKKFAFLKQFNDHLKYHSDARPHRCNVCAKEFRLKSFLVTHMRIHTGERPYKCEVCGSSFKTSDGLVKHMQIHSNLASNLLECDICGAKFSRRTHLSAHSKVHRQTPFHECPNCDKQFLTTRELDRHRVTVHNDRPYKCSICDKSVTTMSNLRQHLKVHTGVIRVKCHICEQSFTKNSNLTKHVKEMHAQDKCRIFSGFAFGIYFLEHGCRVADEQHSGERQKYIAIASSGAVRMLDAKGRRWKGTERVNSKGLTTSPRQGGIHRASISSTWHSDAEPDRDGTGLEKPIRCDICDRQFTKLRYLKRHMQTKHETSHRCDICGKICSHRNLLVRHKRTHTGERPFDCELCGKGFTCKTYLNRHMKTHTGNYNIKCDVCGKGYSTKRKLVAHVRSHTGERPHKCDICGKCFASQIYLESHSQRHPENHKYNCDVCGKGYSTIAMLTLHEKSHSIGRPHKCDICGKTFKYISGLQYHSGVHMAEHPFKYERLYRCNVCNKEFRSNSELVRHMRSHTGERPYKCEICGSSYKISNTLAAHMRCHSNLSSNPHECDICGAKFSQKQHLTVHSAVHREEQFYRCADCDKQFPTSRELEKHRVTIHKDRPYKCTICDRAFFSQSHLRAHLRVHNGVIRFECHICEQSFTKNTNLTKHVKEMHAQDKRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-