Tyan013722.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058068.1:201712183-201713135[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.9e-06 0.011 17.8 0.4 14 40 42 70 31 74 0.80 2 9 0.0017 3.7 9.7 2.4 18 38 74 91 70 96 0.87 3 9 0.016 36 6.5 1.8 13 26 97 110 91 124 0.81 4 9 5.8 1.3e+04 -1.7 1.3 19 26 131 138 118 157 0.71 5 9 0.11 2.4e+02 3.9 2.8 17 38 157 175 142 180 0.79 6 9 0.00036 0.78 11.8 3.4 8 41 176 211 172 214 0.79 7 9 0.11 2.4e+02 3.9 0.7 18 29 214 225 206 231 0.80 8 9 0.0048 11 8.2 0.6 6 29 231 254 229 263 0.87 9 9 2.1 4.7e+03 -0.3 0.3 18 28 272 282 264 289 0.78
Sequence Information
- Coding Sequence
- ATGACAAAAAATTCTGTTTATAAATTTCCGTATAATGATGTTGAATCTGTTGTGGAAGTGGAATACCCGATAAATCCACCAAACATTGAGTTTGAGGCCTCAAAAACCGTAGACTACAGAGTCGAATCGAAAAACATCTGTGAGATATGTGGCAAAGAATACACTCGAACATCCGAACTGACGGAGCACATGGCTGTCCATACCGGCGAACGTCCTCATAAATGTTCCATATGTGGCAAAAGCTACTCCAGGCGAAGCACTCTAACTCGACATGAGTCTACCCATGTACGCAAAAACACCTGGACATGTGAAATATGCGAGAAAGAATTTGGTTTTAAAAGCGATCTAACTTACCACAGCCGCAAACATACCGGAGAAAAACCCTACCCGTGTTCGATATGCACAAAAAGGTTCGGCACGAATGACCATCTGCTTAAACATATGTTAACTCACACGGGTGAACGACCGCATGAGTGTGACATTTGTGGCGCAGCATTTAAACAACGCACAACACTGATGCATCATAGACGAACCCACACTGGCGAAACCGTCGGCGAGTGCGAAATATGTGGCAAGAAGTTCAACAGAACAGATCTGCTGACCGGGCATATGGCCTCACATGTAACCGAACGACCTCACAAGTGTGGCCTGTGTGACAAACAATTCAAACACCGAACTAGTCTCAACGAGCACGCGCGCATACACCACACCGGCGAACAATCGTATAGATGTGATATTTGTGGGAAGGGTTTCGGTAGAAAATATCAGCTCGTACATCACGACATGGCCATCCATACTGGGGAACGTCCGTTTACATGTACCACGTGTGGTAAGGGATTTGTCGAGAACAGGCGAATGCGCCAGCATGAACTAAACCATGCTAAATGA
- Protein Sequence
- MTKNSVYKFPYNDVESVVEVEYPINPPNIEFEASKTVDYRVESKNICEICGKEYTRTSELTEHMAVHTGERPHKCSICGKSYSRRSTLTRHESTHVRKNTWTCEICEKEFGFKSDLTYHSRKHTGEKPYPCSICTKRFGTNDHLLKHMLTHTGERPHECDICGAAFKQRTTLMHHRRTHTGETVGECEICGKKFNRTDLLTGHMASHVTERPHKCGLCDKQFKHRTSLNEHARIHHTGEQSYRCDICGKGFGRKYQLVHHDMAIHTGERPFTCTTCGKGFVENRRMRQHELNHAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462338;
- 90% Identity
- iTF_01462338;
- 80% Identity
- iTF_01462338;