Tyan033295.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058069.1:315136136-315136960[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-08 3.4e-05 25.5 0.1 4 38 18 51 17 58 0.90 2 2 8.4 1.3e+04 -1.9 0.0 23 39 227 243 227 246 0.74
Sequence Information
- Coding Sequence
- ATGCCTCGCGTGTACAAACGAAAATCGAATCGTCAAACGTGGACTACCGTTCAGCTTGCGGAAGCCAGACACGCAGTAAAATGTGGAATGTCCGTTAATGCGACTGCGGCCAAATACGGAATCCCAAGAACCACGTTGATCAGACGGATTGCAACTCCTGAAATGCCGATGCGTATGGGACCGAAAGATACTGTTTTCACGACAGAGCAGGAACATGAACTAGTGCGGCATATTCTGAATcttgaaaattgtttttatgGTATCACACAAAAGGATGTGCTTAAACTAGCTTTCGAATTAGCTGAACGAAACTCGTTGACACATCCtttcaacaaaacaaaacaaatggcAGGACGTGACTGGTTGGTTGGAATTTTAAAACGAAACCCCGAAAGAGCGCTTCGAAAGCCGGAAGCAACTTCTGCTGCTCGTGCACGCGGGTTCAACAAACCGGCAGTTAACGCGTTTTTTGATTTACTTGAAGGTATTCTTAAAGACAAGCAGTTTGGTCCAGCCCAAATATATAATGCGGATGAAACCGGGATTAGTACGGTTCctccaaaaaaaacaaaaaattatggctcggaaaggaaaaaaacaagTCGGATCTATTACCTCCGCGGAGCGCGGTGGAATAACATCTGTAATGATGTGCATGTCGGCGACGGGACAACATTTGCCGCCATTCATGATTTTCCCGCGAGCACGGATGAACGAAGGATTGAAAAAAGGGGCTCCTGCCGGGACAAAGTTCAGATGTAA
- Protein Sequence
- MPRVYKRKSNRQTWTTVQLAEARHAVKCGMSVNATAAKYGIPRTTLIRRIATPEMPMRMGPKDTVFTTEQEHELVRHILNLENCFYGITQKDVLKLAFELAERNSLTHPFNKTKQMAGRDWLVGILKRNPERALRKPEATSAARARGFNKPAVNAFFDLLEGILKDKQFGPAQIYNADETGISTVPPKKTKNYGSERKKTSRIYYLRGARWNNICNDVHVGDGTTFAAIHDFPASTDERRIEKRGSCRDKVQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -