Tyan060818.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- ab_1
- Assembly
- GCA_030247195.1
- Location
- CM058070.1:302113799-302115245[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.6e-10 7e-07 30.9 0.0 4 38 270 305 269 310 0.93 2 3 0.029 44 5.9 0.0 23 35 337 349 322 354 0.89 3 3 4.7e-10 7.2e-07 30.9 0.1 7 38 381 412 378 416 0.94
Sequence Information
- Coding Sequence
- ATGAATCGCACGGATGTTTCCTGCGTAAAGTGGGAGGACTTCAATGATCACATGTTCTCCACCTTCCTGGACGTGTATTTAAATGCCCTGTATACGGATGTGAATCTGGTGCTAGCAGATGGAGGTCAGCTCACGGCCAGCAGAATGGTATTGTCGATGGCTTCTAAGTTTTTCGAGGATATATTCAGTACCGCCTTCACTGCGATGCCTTTCTGCGGAGGCGATGGATTGCAGGATGTTAACATCATGATTCCGGATGTAAACTGCGGAATCATGAAAAATGTGTTGAACTTTATCTACACCGGAGAAGTGCAAATGAATGCGAGAGAAATGTCGGACTTCTTCGAAGCATGCAAGTTGTTTCAACTGAAGGGACTAGACTATCAGAATGGCAATATCACTGGTGTTAAAATTAGTGGGTCCAACATTATAACTCCGGTACAGTTTGAATACGATGATCTGCATGATACGTACGTGGAAGGTTCGTCCGATGGCGCGGGAGAATCTGAAGTGAGTATCATCGACGCTGGGACAAGTTTGGATGTAGTCGAGGATACAACATTTCAGCAGATTGATGAGGCGAAAAATGACCTGGGAACTGAACAAATTAATCAGTATTACGAGGTTGAAATTGATTTGCcagaattggatacaaaatctTTACCACAAACAATGATCGAAACAAAAGAAGAACCGAAGACAGATCATATTCAGACGATTCCTTCCGATGTTGATATCAGCATGAATGAAAGTGGCGAATCGTCCGGTCAATCGAAAAAGCGAGCTAAAAACATTGAATATGGAGCTCGCTTGGACGAAGCGATAAACACAATTATCCAGGGAGGTGCCAGTTTCCGAACAGCTTCAATTCAGTACGGTATTCCAAAAACCGTTCTCTGGCGAAAAGCAGTAAAAGCACCAAATTATAAAGCTGAACGTCTTGAATTGCCTTCACCGCGAAAGGAAGCCATTGAAGCATTAAAATCAGGCGAAAAACTCCTGAATATCAGCAAACGCTTCGATATCCCACTGTCCACATTGCATCGTGACAAACTAAAACTATACAGTGAAGGGACGCTTCCGGAGAATGTTTCGTTGAAGCAACGGGACAAGGGTTTAGATTTCAAGCAACGTGTCTTGGAAGCGGCCCAGCAATGTTTGTCTGGTTACATGTCCCAATCGGAAGCTTCCAAACTCTACAAACTACCGAAGACTACAATCTGGAGGCGTATCAAAGCCCTGCGGAGAGAAGTTGGTTCGAAAGATGGTGCCACGGGGGAAGCAGGTTCAACGGAAATCGATATGAAATCCGAACTTATAGAAACACTAGAGGACAATGACGAAGACGCGGAGGAGGAACATCTCGATTCGGAATACGTGGTTTTAGTCTGA
- Protein Sequence
- MNRTDVSCVKWEDFNDHMFSTFLDVYLNALYTDVNLVLADGGQLTASRMVLSMASKFFEDIFSTAFTAMPFCGGDGLQDVNIMIPDVNCGIMKNVLNFIYTGEVQMNAREMSDFFEACKLFQLKGLDYQNGNITGVKISGSNIITPVQFEYDDLHDTYVEGSSDGAGESEVSIIDAGTSLDVVEDTTFQQIDEAKNDLGTEQINQYYEVEIDLPELDTKSLPQTMIETKEEPKTDHIQTIPSDVDISMNESGESSGQSKKRAKNIEYGARLDEAINTIIQGGASFRTASIQYGIPKTVLWRKAVKAPNYKAERLELPSPRKEAIEALKSGEKLLNISKRFDIPLSTLHRDKLKLYSEGTLPENVSLKQRDKGLDFKQRVLEAAQQCLSGYMSQSEASKLYKLPKTTIWRRIKALRREVGSKDGATGEAGSTEIDMKSELIETLEDNDEDAEEEHLDSEYVVLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462148;
- 90% Identity
- iTF_01462148;
- 80% Identity
- iTF_01462148;