Basic Information

Insect: Tolmerus cingulatus
Gene Symbol: chn
Assembly: GCA_959613345.1
Location: OY390708.1:46047888-46052103[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00068 0.13 14.1 2.3 1 23 236 258 236 258 0.98

2 6 0.053 10 8.1 3.4 1 23 264 287 264 287 0.95

3 6 0.00021 0.042 15.7 0.7 1 23 390 412 390 412 0.98

4 6 0.15 30 6.7 0.1 1 23 416 439 416 439 0.96

5 6 3.2 6.3e+02 2.5 0.1 3 21 444 462 443 463 0.93

6 6 0.0018 0.35 12.8 4.3 2 23 841 863 840 863 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00068	0.13	14.1	2.3	1	23	236	258	236	258	0.98
2	6	0.053	10	8.1	3.4	1	23	264	287	264	287	0.95
3	6	0.00021	0.042	15.7	0.7	1	23	390	412	390	412	0.98
4	6	0.15	30	6.7	0.1	1	23	416	439	416	439	0.96
5	6	3.2	6.3e+02	2.5	0.1	3	21	444	462	443	463	0.93
6	6	0.0018	0.35	12.8	4.3	2	23	841	863	840	863	0.96

Sequence Information

Coding Sequence: ATGACGACACTAATACCCGTTACCCAGCCTACAAATGTTGAGGCTGCGTACGAAGACATGTTTAAAGAAATAACGCGAAAACTTTACGGAGAGGAGACTGGAAATGGTCTCCATACCCTTGGCACTCCTGTTGCCCATGTGGCGACCTCAGGACCAACGGCTCCTGAAGGAGAAAGATCTTTTACCACTTTGATGTCAGATAGATCTTTGGCCCAGACAATTGAGTATGAGCACAATGCGGCAACGGAAACATCAACGGCAAACAACTTTAAATCAGAAGACCATTTGACCACGGCGTTTGGACTGGCGGCGTTGATGCAAACAGGATTCCCTACGACTGGGACCATCCTGAATACACAGGCATTGCCAAAAACAAGTACAAACATAACATCAACAGTGGTAACTTCGACTGGTAACAATCCATCAAATAATTCAGCAGGAAACAACAATAATGGGAACGCAAACGAGCACAGATGGAGTGGCTCCAGTGAGGAAATTATGTCCTGGCAGGCTGAAAGCAAACTGAACGCGTTCAATGGGGCGCAAAAATCGTCTAAACTAGCAAAGAACCGTGACAGCGACTTATATCAGACATCCTCTGCGAATCACAACAATAATCAGAGCAACAATTCGCGGAAGAACAAGAGCGCGTCCAACAACCACAATCCCTCTGTAAATAGTAATCAACTTCAAATTCAGAAAAGATATAGCTGCTCCCACTGTCCCTATTCGACGGATCGTCGAGATTTGTACACACGACACGAGAACATTCACAAGGACGAAAAACCATTCCAGTGCTATGCCTGCCTGAAGCAGTTCAACAGAGCCGACCATGTGAAGAAACATTTCTTGCGCATGCATAGAGAGTTGCCCTACGACATCAACAAGACTCGGCGGTCCATGAACGGTGACCAAAAACCGAATATCTTCGCTCAAAATACGGGTAACAACAatcaacagcagcagcagcagacGCAACAACAGATCACCGATAGTTTCATCAATGCCCAGAGAAACACCAACGCCCAGGAATCATCCAGCCTGAGTATTGCGCAGACAATAGAAAGTGTTGCGACAGCTCAAATTCCCCAGCATGCCATTCAACAAATGAAGCAGGAGAAGTCTTCCGACGACAAATCAGCGGTTAAGGTGAAACGCGAAAAACGTTTCAGTTGTTGTTACTGTCCATGGTCAGGAGCAGATAAATGGGGTCTTAAGCGACACCTAAACACCCACACGAAGCCGTTCGTTTGCATGCTGTGCGATTATAAAGCAGCTCGATCAGAGCGCCTCGCCACACATGTCCTTAAAGTACACAATAAGAAAGCCTGCAACAAGTGCTCCTTCCTTGCCGACAACCAGGAGGAGTATCAGACGCACATGAACGAAATTCAAACTATTCAATCATCTAACAGTAGTGTAGCAATCTACACAACGAACGACTTGTCGTCCAACACCGGTGGCAATGCACCAAATGGCTTACAAGAAATCGTCGTTACGCCCCCCTCAGTGGTGGGGTGGCGTCTTAGCGCCAGTGGTTCCTTGATGATCCCCCCGCACGTTCATACTGCGTCTGGTGGGAATGAGCAGGCGACAAGTAGTTCGTTAAATTCGAACCAAAAACGAGGGGCGGAAAGGCTTTTCCAATATATGGAAGCTGATGGAAGCGATCCCGAAGATTATACgcgCCAATTAAAAATGGACGCAATCAGTCGAAATACAGCTTCCGTCGCCCAGGATTTTCATAATGCGGGAGGCGtaacttttaaagttaatacAGCAACAGTTTCAACAAAGTCGACTGATCAGCTGCTGAATAAGGAGAACAACAACTCGATGGAACAACAAAACGAGAACGACTCGAAAGTGCATCAGAGAAAGGCGATGTCGTCAAAGCATAAAAACGCAAGCAAGCAGCTAAATAAATCGTCGCCTCCCGCGTACATAAATGCAACAAAATCCCACACAACGAAAGGACATCGCCTTGATCTGACACaggataaagaaaattataactcGATATTCAGCAACATGGAGTATGAGAATAATCTAAAACAGCTCGAActccaatttcaaaattatgtgaaGGAAATCATTAGCAAGTACTATGCGGAAACGCCCCTTTTGTACGCAAGCACGACCGGCAGTATGAGTCCCAGTGCCATGTCGaccgaaacaaaaaattatattgaatacTTAAAGAATAAGAGCGACATAACATTAACTATAGCTCCAAGAAATTGCGAGTCCACTTTATTCCCACCTGAGGGTCCTGAAATGAACCTTGCACTTCCCAATGCGGAAAAACGCAACCGGAAACAAGCCCAGCCTAAGAAGATATCGAAGCACGAACTCCTGCTGAATCGGCTCCGGGACAAGTATCTTAAGAAGCTCGTGGACAGGAGGAAGTCGTGCGTAAAGTGCGCAAACAACATCAGAAACTACATGGTCTTCTTCCCGTACCACAGCCCTGGATCCTTGGCCTTCCACCGATTGTGGAAGCACACCCCAAGGATCTCATCGTGCCCAGCTTGCCATAAACAGTTCCAGCACTCCTACAGCTTGAAGGTGCACCAGAAAATTAAGCACAGAAGGGGGAGTCCGTAG
Protein Sequence: MTTLIPVTQPTNVEAAYEDMFKEITRKLYGEETGNGLHTLGTPVAHVATSGPTAPEGERSFTTLMSDRSLAQTIEYEHNAATETSTANNFKSEDHLTTAFGLAALMQTGFPTTGTILNTQALPKTSTNITSTVVTSTGNNPSNNSAGNNNNGNANEHRWSGSSEEIMSWQAESKLNAFNGAQKSSKLAKNRDSDLYQTSSANHNNNQSNNSRKNKSASNNHNPSVNSNQLQIQKRYSCSHCPYSTDRRDLYTRHENIHKDEKPFQCYACLKQFNRADHVKKHFLRMHRELPYDINKTRRSMNGDQKPNIFAQNTGNNNQQQQQQTQQQITDSFINAQRNTNAQESSSLSIAQTIESVATAQIPQHAIQQMKQEKSSDDKSAVKVKREKRFSCCYCPWSGADKWGLKRHLNTHTKPFVCMLCDYKAARSERLATHVLKVHNKKACNKCSFLADNQEEYQTHMNEIQTIQSSNSSVAIYTTNDLSSNTGGNAPNGLQEIVVTPPSVVGWRLSASGSLMIPPHVHTASGGNEQATSSSLNSNQKRGAERLFQYMEADGSDPEDYTRQLKMDAISRNTASVAQDFHNAGGVTFKVNTATVSTKSTDQLLNKENNNSMEQQNENDSKVHQRKAMSSKHKNASKQLNKSSPPAYINATKSHTTKGHRLDLTQDKENYNSIFSNMEYENNLKQLELQFQNYVKEIISKYYAETPLLYASTTGSMSPSAMSTETKNYIEYLKNKSDITLTIAPRNCESTLFPPEGPEMNLALPNAEKRNRKQAQPKKISKHELLLNRLRDKYLKKLVDRRKSCVKCANNIRNYMVFFPYHSPGSLAFHRLWKHTPRISSCPACHKQFQHSYSLKVHQKIKHRRGSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00628739;
90% Identity: iTF_00937647;
80% Identity: -