Tcin030064.1
Basic Information
- Insect
- Tolmerus cingulatus
- Gene Symbol
- -
- Assembly
- GCA_959613345.1
- Location
- OY390709.1:35908456-35910151[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.05 9.8 8.2 0.1 5 23 70 88 66 88 0.92 2 14 1.9 3.7e+02 3.2 0.1 1 23 94 116 94 116 0.95 3 14 0.025 4.9 9.1 1.5 1 23 181 204 181 204 0.86 4 14 1.9e-05 0.0037 19.0 3.1 1 23 210 232 210 232 0.99 5 14 4.7e-06 0.00092 20.9 1.9 1 23 238 260 238 260 0.98 6 14 0.0019 0.37 12.7 0.1 3 23 267 287 265 287 0.97 7 14 0.00034 0.066 15.0 0.2 1 23 293 316 293 316 0.97 8 14 6.3e-07 0.00012 23.6 1.2 3 23 322 342 320 342 0.96 9 14 2e-06 0.00039 22.1 1.8 1 19 348 366 348 370 0.96 10 14 2.6e-08 5.1e-06 28.0 0.3 1 23 376 398 376 398 0.99 11 14 1.6e-07 3.1e-05 25.5 0.2 1 23 404 426 404 426 0.98 12 14 1e-05 0.002 19.8 0.7 2 23 433 454 432 454 0.97 13 14 2e-05 0.0039 18.9 4.8 1 23 460 482 460 482 0.98 14 14 2.4e-06 0.00047 21.8 4.3 1 23 488 511 488 511 0.96
Sequence Information
- Coding Sequence
- ATGGCAAATGATCGTTTGAGTGCTGGCAATGAATTTCcgctatttaatttaaaattgtcgaGTCTAAATCAAAAAGTTTCCGATGTTGAAACAGAAATTGGACTCACCCAGGAATTTTCTTCATCATCCAGCcgttggaaaacaaattttcgttCCTACGAAAATAAAGAATGTCCGGGAAAAtcctcatacaataatatttgcattatttgtgGTGATTCCTTTGAAGATTCAATTCTGCTAAAAAAACACTTTGAAACTCATAGAAACGAAGATCCCTTTGAATGTGCCTACTGCGCCAATCTCTTCGAAACAATTGAAGAATTTTCAGaTCACGTTGTGACGCATACACCGAAGTTAAAACTATTAGCAGATCCTGAGACGGAAAATCAACCTCTTAAAAAGTTAGAACAACCAGAAGcagaggaattagaagaaaGATTCTGTGATACCCCAGACCACGTAGATTCACCTAAAACTCCTGAAGAACCCAAACTAGGACCTCTCCCCTGGCAAACAAGGGACAACAAAATTCGTCCGTATAATTGCATAAAGTGCAACAGGTCCTTTACTTTGGCCAGCAGCTTAAGGCTTCACGACAGGAGAAAGCATTTGCTTATAAAAAACTTCAAGTGCAACATTTGCAGCTCTAGTTTTGCGCAATCCAGCGATTTTTACAAGCACAAAAGGACGCATACAGGAGAAAAGCCCTACTCCTGCGAAGAGTGCGAGGCCCGTTTTAGCCAAAAGCGAAATTTAAGGAAccataaaaaaatgcattCGAACAGCAgacaaatatgtaaatactgTGGTTTAGGGTTCCTGGATGCTTCAAAGCTGGCACAGCACCTGACAACGCATAAGGGTAAAGTGACCTACAATTGCAAAGTCTGCTCAATTCCTTACAATAACAAGGAAGATTTAGATTTGCATCTTAGACGAATCCACGACAATTATTTAGACTGCCCAGTTTGCGATCGATCATTTTGCACTGCCTCAGAGTTGAGGCGGCACACTATAAAGCACACAGGGGAAAAGCCTTACACCTGTAATATCTGCGGAAAATCCTTTACTCACCGAACAAGCCTTAAAAATCATGACGTCGTCCATACTGGACAGAAACCCTATCAATGCACCTATTGCGGCTACGCCTTTGGGTACTCTGGAAATCTTAAAGCTCATATGCGAATCCACACCGGGGAAAGACCTTACGAGTGTGGGATATGCCAGAAAACCTTCGTCCGATCGGCAAATTTAAACGAGCATCTCAAAATTCATACGGGAGAGAAGCCAGTTCGTTGTGAGTTTTGCGACAAGGCATTCACAAATTCATCGGGATATgcaaaacataagaaaattcaCACGGGGGACCGGCCTCATAAATGCAATATGTGTACCAAAACTTTTGTGCAACTCATACATTTGAGTAAACACATTTTGACCCACACTGGTGAGAAGCCTCatcaatgtaaaatttgcCGCAAGTCTTATAAGAGGAAGGACAGCCTAAACAAGCATATCCAGCAGCTGCATGAGGCTAAAGCATCTGGAAGTAATGAGGAACAGGACACGGATCAGGCGATTGAACCAACTTAA
- Protein Sequence
- MANDRLSAGNEFPLFNLKLSSLNQKVSDVETEIGLTQEFSSSSSRWKTNFRSYENKECPGKSSYNNICIICGDSFEDSILLKKHFETHRNEDPFECAYCANLFETIEEFSDHVVTHTPKLKLLADPETENQPLKKLEQPEAEELEERFCDTPDHVDSPKTPEEPKLGPLPWQTRDNKIRPYNCIKCNRSFTLASSLRLHDRRKHLLIKNFKCNICSSSFAQSSDFYKHKRTHTGEKPYSCEECEARFSQKRNLRNHKKMHSNSRQICKYCGLGFLDASKLAQHLTTHKGKVTYNCKVCSIPYNNKEDLDLHLRRIHDNYLDCPVCDRSFCTASELRRHTIKHTGEKPYTCNICGKSFTHRTSLKNHDVVHTGQKPYQCTYCGYAFGYSGNLKAHMRIHTGERPYECGICQKTFVRSANLNEHLKIHTGEKPVRCEFCDKAFTNSSGYAKHKKIHTGDRPHKCNMCTKTFVQLIHLSKHILTHTGEKPHQCKICRKSYKRKDSLNKHIQQLHEAKASGSNEEQDTDQAIEPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -