Tver020120.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282558.1:145065231-145068124[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.039 22 9.0 3.5 1 23 64 86 64 86 0.98 2 17 0.0056 3.1 11.7 0.3 1 23 92 115 92 115 0.94 3 17 0.25 1.4e+02 6.5 0.7 1 22 144 165 144 165 0.94 4 17 0.063 35 8.4 0.7 1 23 173 195 173 195 0.98 5 17 0.0012 0.68 13.8 0.9 3 23 203 223 201 223 0.96 6 17 5.1e-05 0.028 18.1 0.7 1 23 229 251 229 251 0.96 7 17 0.48 2.6e+02 5.6 0.3 1 21 257 277 257 278 0.94 8 17 0.055 30 8.6 1.5 1 23 536 559 536 559 0.96 9 17 0.016 8.8 10.3 0.2 1 22 587 608 587 610 0.90 10 17 0.6 3.3e+02 5.3 0.8 1 23 616 638 616 638 0.92 11 17 0.0093 5.2 11.0 1.2 1 23 646 669 646 669 0.95 12 17 0.00067 0.37 14.6 0.4 1 23 672 694 672 694 0.98 13 17 0.0004 0.22 15.3 0.4 2 22 708 728 707 728 0.95 14 17 0.00033 0.19 15.6 2.0 1 23 736 758 736 758 0.97 15 17 0.00013 0.071 16.9 3.3 1 23 764 786 764 786 0.98 16 17 5.3e-05 0.029 18.1 0.6 1 23 792 814 792 814 0.98 17 17 9.2 5.1e+03 1.6 2.3 6 23 825 842 820 842 0.81
Sequence Information
- Coding Sequence
- ATGACGAATAGCGAAAAGGACTCAACAGATTTGGAAGAAAagccaaattttattgttgaaggAAATAAATTTTGCTGCCTATTTTGTGGCAACAAATATTTGAGTCAGGCGCGTTGTGTGGCTCATACACGGTTTTGTGACGAAAAAGATGATACAATATCAAGCATCAAAGTTAACGGGGTGCCAAAGTTTGAGTGCAAGGTGTGTACCAGTCGCTTTAAACATTTGGTTGGCATGAAGAAACATGAACAGAAGCATAAATTGCCTGGTGGATTTGCATGTAGCACTTGCGGTGAACGATATACAAGCAAGGAGGCCAGAATTGAGCATCAGAAAGCGCAACATAAAGTTGagaaggaatttaaaattgtgaagcAAGAAAGTTTTAGTTCGGTTACCAGTGATATTGATGAAAAACTACCCGAAATTTTTCGATGCCATGAATGTGCTGGAATtttccgtaaacaaaatgtttatcagaATCACATAAGCACCAAATGTGGCACTGAAAAACAGTTTCAATGTGAAATTTGCTTGGCCAAATTTCTCACTAAGAATACACTGTTTGCTCATAAACAGATCCATACTGGTGTAAAAGGACATCTGTGCGATTACTGTGGTGCCAGTTTTTTAAGTAAAGGTCAGCTGAAAGTGCACGAAAGATCACACACGGGCGAGAAACCATTCAAATGTGAAATATGCAACAAAGGTTTTTCGTATCGAGAAAGTTTGGTTACACATTCATCAATACACACCGGGATTAAACCGTATGCGTGCCAAGCATGTGATTTAAGATTCTCATGCATTGGCAATTTAATCAAACATCGAAGAGCTCGTCCTGATACGTGCGGGCAGGCTAAATAccaacaaaactataaaatagcgCCTAGGGCCagcacaaaaattaaacatattgaGGCCAGCACTATTGAAATGGATCccgaaatcaaacaaataactGCGTCACCGATTCGTGAAACTTCTCCACCGGTATTTGAGAGCCCACcaacaataaaaaagttttccGAAACAACCATCGCAGATCAAAAACCGATCTTATATCGAATTACCGAAATAACGCCAGTCGAACCACAAATAATTGATTTGAACAACGTCGATGAAATAAGGTCGCTTAAGGACGAAAATATTATTCTCACAATGAAAGACGATCAAGATAAAACAGATGAGgtggatgaggatgaggattcCGAGACAAAATTAGACGAACCACCCGAAGAATATCTGCACTTCATACAATCGGACGAAAATAGTGGCGGTGATGAAGAATATGTTACTGCGGGTTGGTACGATAAGAGCGAAGAGATTGAATATATTGAAAATGAGAATGAAACTACTGAGACGAACTATGTTCTAGAAATCGAGCTGCAAAATTCCGAGCAGTCTGAACCACCTCCTAACTCATTTTATACAATCATAAATAGGTCGGACGGTGATGATTGTGATACGTTTATTCTTCAAGCGGAACCTGAAAAAGAAAGCAGCATTAATGAAGTtctgataaaatttgaaaaccccGATCAGGAACCTAAACTCCAAGAGAAGGAAACTGCATCGCCTATTGAAGACAGTGGCACGCCAGCGCTGCACCAATGTACGTTCTGTCCAAAATGGTACATACAACAAAACCGACTAAAGAACCATTTGTTGATTGATCATGCACAAAATGATGAAAAACCTGGAGATCAACAAGAAGAAGAAAATACCCGAATAATAGAAGATGGTGGTAGTTCAGAGGTACACAAATGCCCTCTATGTCCAAAATTGTACATTCAGCCAATCAGATTAAAAAATCATCTCGTAGGAGAGCATGCTGCAAAAAATGAGTTTGCTTGTCAAGTTTGTCATAAATGGTTTAAATCGGAAGATGAACGAATAACACATGAAGCCAATCATGGCAATGATGGCTCGCTCATACATAAATGTCCGACTtgtgaattatattttggatCATTGGACGAACTTGAAACGCATCATAACGAAATCCATTTCTGTTTTCGGTGTCCAAAATGTTCGACTGTAGTCGATTCAATGGATGCTTTAAAAACACATATGACTAAACATCAAAAAGTGCGAGGATCAAAtggtcaacaaaaaaatttgaagtgtGAATCTTGTAATAGGATGTTTTCAACAAAGGTTGCACTTTCGGATCATCAGCGATCAGATTGTGGACGGGCACCACTTTACAAGTGTGATGTGTGCGACAAAAACTACCACAGTGCAGGCAGCCTGAAAACTCATAAGACCGTGCACACTGGAGCATTACCGTTCAAATgcaaattttgtagtaaaatgtTTCGTACCAAAGGACAAGTTAAGGTGCACGAACGACAACACAATGGTGAAAAACCTTTCAAGTGTGACTTGTGCCCCAAACAATTCGCATACCGCGAAAGTCTTTTAACTCATCAATCAATACATACCGGTCGCAAAAGATTCATGTGTATCTCGTGCGAATCTCGATTTTCCTGCATCTCTAATTTACAGTCGCATcgaaaatcacataaattaaCATGTGGCCAACACCCGAATTTTACAAAGCCAATCGATTCATCAGACCCAGATGTGGAAATGAAAGtgtttgttgaataa
- Protein Sequence
- MTNSEKDSTDLEEKPNFIVEGNKFCCLFCGNKYLSQARCVAHTRFCDEKDDTISSIKVNGVPKFECKVCTSRFKHLVGMKKHEQKHKLPGGFACSTCGERYTSKEARIEHQKAQHKVEKEFKIVKQESFSSVTSDIDEKLPEIFRCHECAGIFRKQNVYQNHISTKCGTEKQFQCEICLAKFLTKNTLFAHKQIHTGVKGHLCDYCGASFLSKGQLKVHERSHTGEKPFKCEICNKGFSYRESLVTHSSIHTGIKPYACQACDLRFSCIGNLIKHRRARPDTCGQAKYQQNYKIAPRASTKIKHIEASTIEMDPEIKQITASPIRETSPPVFESPPTIKKFSETTIADQKPILYRITEITPVEPQIIDLNNVDEIRSLKDENIILTMKDDQDKTDEVDEDEDSETKLDEPPEEYLHFIQSDENSGGDEEYVTAGWYDKSEEIEYIENENETTETNYVLEIELQNSEQSEPPPNSFYTIINRSDGDDCDTFILQAEPEKESSINEVLIKFENPDQEPKLQEKETASPIEDSGTPALHQCTFCPKWYIQQNRLKNHLLIDHAQNDEKPGDQQEEENTRIIEDGGSSEVHKCPLCPKLYIQPIRLKNHLVGEHAAKNEFACQVCHKWFKSEDERITHEANHGNDGSLIHKCPTCELYFGSLDELETHHNEIHFCFRCPKCSTVVDSMDALKTHMTKHQKVRGSNGQQKNLKCESCNRMFSTKVALSDHQRSDCGRAPLYKCDVCDKNYHSAGSLKTHKTVHTGALPFKCKFCSKMFRTKGQVKVHERQHNGEKPFKCDLCPKQFAYRESLLTHQSIHTGRKRFMCISCESRFSCISNLQSHRKSHKLTCGQHPNFTKPIDSSDPDVEMKVFVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01456752;
- 90% Identity
- iTF_01456752;
- 80% Identity
- -