Tver004441.2
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- prdm10
- Assembly
- GCA_958295665.1
- Location
- OY282558.1:36965279-36967658[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00037 0.21 15.4 0.3 2 23 122 144 121 144 0.94 2 11 1.7e-05 0.0093 19.7 2.8 1 23 167 189 167 189 0.98 3 11 0.0061 3.4 11.6 1.2 1 23 239 261 239 261 0.98 4 11 0.01 5.8 10.9 0.2 1 23 269 291 269 291 0.97 5 11 0.00034 0.19 15.6 1.7 1 23 298 320 298 320 0.98 6 11 0.0073 4.1 11.3 1.1 1 23 327 350 327 350 0.94 7 11 8.6e-05 0.048 17.4 2.5 1 23 355 377 355 377 0.97 8 11 2.8e-06 0.0016 22.1 1.9 1 23 383 406 383 406 0.95 9 11 0.00044 0.24 15.2 1.6 1 23 500 523 500 523 0.97 10 11 0.014 7.8 10.5 5.6 1 23 545 568 545 568 0.96 11 11 0.0093 5.1 11.0 3.5 3 23 605 626 603 626 0.95
Sequence Information
- Coding Sequence
- ATGCGCACAAAATTTGGACCATTCGAAGGTGATTTACGTGATACAAATGAAAGTGATCTGGACAAGTTAAAATGTGAGGTGATCACATATCCTCTTCTCTTGATTgcagaaaaatgtttagatgtCTCAAATGAAAACACTTCTAATTGGATGAGATTTGTTCGGTTTGCGGAGTCTTATGAACAACAAAATCTTTTGCTATTTGAAACAAatgagaaattatattttaagagcTCACAATTTATAGCGGCTAAGCAAGAGCTCCGTGTTGGTTATAGTCGCGAGTATGCCGAAAAGTATCAGTTGCCTTTGCTAAAATCTAAAGACCAGGGATGTGTGAATGGTAATAATTCTGATTATTGGCCTTGTTTCGAATGTGATAACAAATTCAATAGCTCAGAAGATCTCCAAAAACATTTAGATCGGGGTCACGAAAGTGATGTAAGTAGTAAAATTCCACGCCGCAAGAGGCATATAAAACGGAAAGGTTCGTCACGCTATTCTTGTCCTGTTTGTagcaaaactttttttaaaaatgtaaatttccgCCGCCACCTGAAAAATCATTCTGGAAATCCACTTTTGGAAAAACACTTATCTGATTCAGATAGCAACAAATTAGTACTTAAAAGTAGCAGCACCTTGCACAAAAGAAGCAGTAAAATAAAGCccgaaatgaaaaaattgaatattaaaaataaagaaaacaaccaGTTTAAATGTAGTTTGtgttcaaaatcatttttaaatgatgaaagatTAAAGCGGCATGTTATGGTGCACGGACCAAGTGAACTAAAGCCATATCAATGTCCACATTGTGCAAAGCGTTTTTTAAACGGATCGGCTATGGCAGCGCAcgttaaaatacatttatatggaaaattttactttcagtgTCAGCTTTGTAGTGAACGGTTTAAACATAATCCTGAATTTATGGCTCATGTTAAAATACACATGATTGAAAATTcgtattatttatgtaaattttgcaacaaaaaatttcccgaatatgttttaattcgaaaacATATTCGAGCCTTTCACCCCGCTGTGAAACATCCATGCACATTGtgtgataaaaaattttctaatacagATAAAGTACGCATGCACATGTTAACGCATTCggataaaaaagaatttttatgttcTATGTGTGGCAAGCAATTTAAACGCAAGGATAAATTAAAAGAGCATATAAAaagaattcatacaaaaaaagcaGAATCCGCGGCAAAACCAAGATTGCGGCAACCACCAGCCGAAgacaataaacatttatttccgGCAACTGGTACAAGTGCTGAtttaatatttaccaataaCAAATTCGAGGACGATGATAGACTGTTAGAAGTTAATAATAAAGGCGATGATGGTTTGGTGAATTTGGTTGACGCTATAACGGAAGATGATgtggaaattattaataaaaagaagaaaacaaaatttttaccaaaGGTGTCTCCAAATGATTACCAACGTTTCATTTACAAGTGTCACGACTGTTTGCTAGGTTTTAAGCGGCGAGGAATGTTAGTGAATCATTTGGCAAAACGTCATCCTGATATTCGTATCGATTCAGTGCCCGAATTAAACCTTCCAATACTGAAAGcgcagaaatttttttattgtcaatattgTAATAAAGTGTATCGTAGTAGTGGAAAACGAAAgtatcatattttaaaatgtcatcCCGGTTCTGAATTGCCAATGTCGGGAAGACAAAAGGGCGGGGGTGATAATAGTGGATATCCGACTTATTCGGAAACAGTTTCAACGATTACTACGCATCCGCATCTCTGTGATTGGTGTCATAAGCAGTATGCCTCAAAACCAAAGTTAGTTGAGCATCAACGGAAGAAACATGCAGATAAGTTGGAGAAATTAAATGCAAAGGTattaaagaattccaattaCTATCAGCCTAGCCTGGAGACGCATCAAATGCTTGATAACGGATTTAAAGAAAATCCCATCGATAAATATCAGCCGAATGGAGTTAATTATGACATTAATTCCACTACCCACTACGTAGATCATACAATTCCTGAGGTGTGTCCTAAAATCCCAAATAATAATGCTGTACCTCAATCTGACTATCAAACAATATTCGATGACATGGACTACATAAATTTAAGACCAGTATCTATAAGCCAGTCCTCCGGCTCCCCGGGATCCACCGCCGGTTTAatggaaaatagtaaaaaaattacgaCCTATTGTTATTCCGAAAATGGAGGATGA
- Protein Sequence
- MRTKFGPFEGDLRDTNESDLDKLKCEVITYPLLLIAEKCLDVSNENTSNWMRFVRFAESYEQQNLLLFETNEKLYFKSSQFIAAKQELRVGYSREYAEKYQLPLLKSKDQGCVNGNNSDYWPCFECDNKFNSSEDLQKHLDRGHESDVSSKIPRRKRHIKRKGSSRYSCPVCSKTFFKNVNFRRHLKNHSGNPLLEKHLSDSDSNKLVLKSSSTLHKRSSKIKPEMKKLNIKNKENNQFKCSLCSKSFLNDERLKRHVMVHGPSELKPYQCPHCAKRFLNGSAMAAHVKIHLYGKFYFQCQLCSERFKHNPEFMAHVKIHMIENSYYLCKFCNKKFPEYVLIRKHIRAFHPAVKHPCTLCDKKFSNTDKVRMHMLTHSDKKEFLCSMCGKQFKRKDKLKEHIKRIHTKKAESAAKPRLRQPPAEDNKHLFPATGTSADLIFTNNKFEDDDRLLEVNNKGDDGLVNLVDAITEDDVEIINKKKKTKFLPKVSPNDYQRFIYKCHDCLLGFKRRGMLVNHLAKRHPDIRIDSVPELNLPILKAQKFFYCQYCNKVYRSSGKRKYHILKCHPGSELPMSGRQKGGGDNSGYPTYSETVSTITTHPHLCDWCHKQYASKPKLVEHQRKKHADKLEKLNAKVLKNSNYYQPSLETHQMLDNGFKENPIDKYQPNGVNYDINSTTHYVDHTIPEVCPKIPNNNAVPQSDYQTIFDDMDYINLRPVSISQSSGSPGSTAGLMENSKKITTYCYSENGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458909;
- 90% Identity
- -
- 80% Identity
- -