Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282560.1:329475952-329478968[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.25 1.4e+02 6.5 0.1 1 23 129 152 129 152 0.93

2 10 0.001 0.56 14.0 0.1 1 23 195 218 195 218 0.95

3 10 3e-05 0.017 18.9 1.9 1 23 246 268 246 268 0.96

4 10 0.00047 0.26 15.1 1.7 1 23 274 296 274 296 0.98

5 10 0.00077 0.43 14.4 0.9 1 23 302 324 302 324 0.98

6 10 0.00054 0.3 14.9 2.7 1 23 330 352 330 352 0.97

7 10 3.5e-07 0.0002 24.9 0.4 2 23 358 379 357 379 0.97

8 10 0.00013 0.074 16.8 1.7 1 23 385 407 385 407 0.97

9 10 7.6e-06 0.0042 20.7 6.3 1 23 412 434 412 434 0.99

10 10 0.028 15 9.5 0.2 1 15 440 454 440 456 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.25	1.4e+02	6.5	0.1	1	23	129	152	129	152	0.93
2	10	0.001	0.56	14.0	0.1	1	23	195	218	195	218	0.95
3	10	3e-05	0.017	18.9	1.9	1	23	246	268	246	268	0.96
4	10	0.00047	0.26	15.1	1.7	1	23	274	296	274	296	0.98
5	10	0.00077	0.43	14.4	0.9	1	23	302	324	302	324	0.98
6	10	0.00054	0.3	14.9	2.7	1	23	330	352	330	352	0.97
7	10	3.5e-07	0.0002	24.9	0.4	2	23	358	379	357	379	0.97
8	10	0.00013	0.074	16.8	1.7	1	23	385	407	385	407	0.97
9	10	7.6e-06	0.0042	20.7	6.3	1	23	412	434	412	434	0.99
10	10	0.028	15	9.5	0.2	1	15	440	454	440	456	0.90

Sequence Information

Coding Sequence: ATGTTGTGCCAAGATTGTGTTTATGAATTACAGACAGCCTATCAATTTCAACATCGTGCTAAACAATCAAATGATGCCTTATTAAAATGCGCAAATAGTagcactaataataataaaaacgaagtTTTCAGCCACAACAATGCAGCAATGAGAATACAAACGGAACATGGATACAGCTTTATAAGTTTAACACCATTTCCAGTTTCTTCTGAAACCACACCGAACTATAACGAGTTGAATTGCAACGATgatataagtttaaaaataattgatacaaataattattacattagaATGGATGATCGTCCCGATTGTGATCAAAATGAGGATGttgaggaaataaaatattctattttagAGATTGATGGCGAAGAAGAATACCCCTTTAACTGTGTAAAATGCGGTGATAATTTTGGCAGTGACGATTTATTAGCAGCACATATCACTCAGAAACATGCTCACACGCCAAGTCATGATGTATTACTCAATGACTTACAATGGAAGGAACGCAATGAACATTTTGCCACTGAATTTGAACTGGATAAACATGAGAAAGAAACAGAGCATTTTTTAGCAAATACTTTTCTTTGTAGTATTTGTGGAGAAACttttgttgaacaaatattGTTAGATGATCATTATAATACTATTCATCAAGCGGCAGGGGACGACGAGGAAGATAATAAGAAATATGATTTGATCGATTCTGTTAAAAAGACacccaaaattcttaaatatttatgttcaatatgcggtaaaaattttacaactaaACAACGTTTACGAATTCATACGTACACACATACAGGAGAACGCAATTATGATTGTGACCTATGCTcgaAAAAATTTGCAACCGACTTTCGTTTGCGAGTTCATCGTCGTACGCATACGGGTGAACGACCGTATGAATGTCCTGTGTGTAAATTACGATTTGCCCAACCAAATGCCCTAAAATGTCATAAACGAGTACATACTGGTGAGAAACCTTACGAATGTCGATACTGCTCGAAAAAGTTCTCTCAAAATACAATTCTAAAAACTCATATGACACTACATACTGGTAAAACAATTCAATGTCCAGattgtgataaaaaatttagtcgTGCCTCATATTTGATACTGCATAAGCGTGAGCATACTGGCGAAAGACCATACGCTTGCGATCGGTGTCCAAATCGGTATAAGCAAAAGAGTCATTTAGATAGGCACATGGATATTCATAATGGTGTGAAGTATAAATGCACCATATGCCATAAGGACTATTCAAAACAGTATTCGCTCAAAAAGCATATGTTCACGCACACCAATGAGAAGCCATTTAATTGCCCACATTGTACGGCCACATTTACTCGAAGTGATAGTATAATCCCAAACTCTGTTTCTAAATGGTTTTCACCATCAACAAAAGATGATAGCAAAAATGGTTCCAACAGACGGCGAAGGGAAATTTCTGAAGAACAGGATTCATCAAATGAAGAGAGTTTTAATCAAGAGGAAGAAAATGGTTCAGAGCCGCCAGTGAAACgatccaaaaatgatttactcgAGGTAAGCTTGAAtggataa
Protein Sequence: MLCQDCVYELQTAYQFQHRAKQSNDALLKCANSSTNNNKNEVFSHNNAAMRIQTEHGYSFISLTPFPVSSETTPNYNELNCNDDISLKIIDTNNYYIRMDDRPDCDQNEDVEEIKYSILEIDGEEEYPFNCVKCGDNFGSDDLLAAHITQKHAHTPSHDVLLNDLQWKERNEHFATEFELDKHEKETEHFLANTFLCSICGETFVEQILLDDHYNTIHQAAGDDEEDNKKYDLIDSVKKTPKILKYLCSICGKNFTTKQRLRIHTYTHTGERNYDCDLCSKKFATDFRLRVHRRTHTGERPYECPVCKLRFAQPNALKCHKRVHTGEKPYECRYCSKKFSQNTILKTHMTLHTGKTIQCPDCDKKFSRASYLILHKREHTGERPYACDRCPNRYKQKSHLDRHMDIHNGVKYKCTICHKDYSKQYSLKKHMFTHTNEKPFNCPHCTATFTRSDSIIPNSVSKWFSPSTKDDSKNGSNRRRREISEEQDSSNEESFNQEEENGSEPPVKRSKNDLLEVSLNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01456748;
90% Identity: -
80% Identity: -