Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282558.1:326766224-326768858[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00013 0.07 16.9 2.1 1 23 428 450 428 450 0.98

2 10 1.2e-05 0.0068 20.1 3.5 1 23 456 478 456 478 0.98

3 10 7.5e-07 0.00042 23.9 0.4 1 23 484 506 484 506 0.98

4 10 0.0038 2.1 12.2 0.5 1 23 512 534 512 534 0.98

5 10 2.4e-07 0.00014 25.4 2.6 1 23 540 563 540 563 0.98

6 10 0.01 5.7 10.9 0.4 5 23 571 589 570 589 0.94

7 10 0.028 15 9.5 1.5 1 23 595 617 595 617 0.96

8 10 0.0009 0.5 14.2 2.9 1 23 623 646 623 646 0.97

9 10 0.0015 0.81 13.5 4.0 1 23 652 674 652 674 0.98

10 10 0.026 15 9.6 1.1 1 23 680 703 680 703 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00013	0.07	16.9	2.1	1	23	428	450	428	450	0.98
2	10	1.2e-05	0.0068	20.1	3.5	1	23	456	478	456	478	0.98
3	10	7.5e-07	0.00042	23.9	0.4	1	23	484	506	484	506	0.98
4	10	0.0038	2.1	12.2	0.5	1	23	512	534	512	534	0.98
5	10	2.4e-07	0.00014	25.4	2.6	1	23	540	563	540	563	0.98
6	10	0.01	5.7	10.9	0.4	5	23	571	589	570	589	0.94
7	10	0.028	15	9.5	1.5	1	23	595	617	595	617	0.96
8	10	0.0009	0.5	14.2	2.9	1	23	623	646	623	646	0.97
9	10	0.0015	0.81	13.5	4.0	1	23	652	674	652	674	0.98
10	10	0.026	15	9.6	1.1	1	23	680	703	680	703	0.97

Sequence Information

Coding Sequence: ATGATGAATACTTATGATTTATCCGAGCTGGACGATATAGATGAAGTAGAACTGGCCGACCAATTGGAACAGattgaaGTGCTTATTCCTCATGATGAGGAACAAATAACGGCACAACACTATAGCATATTTTTAAAGTATgcaaaaatcaatgaaaaatttattactgAACCGGAGCAGTACGAAAAATTGGTCAAACGAATGGTGACTGAATTACATACGACTGGAGTTAAAAAATCACCAAGTGACTGGTTGATAATCATGTCGGAATGGAGAGAGAAAATTAAAAGAGACTATGATGAGTACCGTTACAGagAGAAGCCAGTTAAATTTACTGCAGAAGAACTGGAACTTCTTAATTTACTGATTAAGGACGATAAAACTGTACCATCACAATCACAATTATCTTGTATGCTTGATCATTTAGAAATCGCAAGTGAATCGCCAAAATTATGGGCCACAATCAATTTGGAAATGGAATCTCTTGGCATTTTGAATCGAGATGAGCATTACTGGCGTAAAATGTACGAGAAATGGTGTTCTCGAgttaagttaaaaaaacaaatggtTGACGATTGGGATGCCCAGAACTCGTTTAgcgaacaaaaaccaaataatatatttaacagCCTAGAATTGAGATTGATTGAGTTTCTTACAAGTCGAGGTGAAATGCAAGCGCCGAATGATGATGATGCGGCTGAAGTGCAGCAGGCGCAAATTGATATTCTATCGAATTATTGTCGCGTATGCTTAACAATCACACCGGAGATGGTTTATATATTTAGTGAAATTCCGGAGTATGGAAACAttgttgacaaaattaatcactGCGCTACCGTATCACCGattgTTAAGGATGATGGTTTTCCTCAAAATATTTGCCAAAGTTGCATGGAAATGCTGGAAAATGCGTATCGATTCAAAGTACTCTGCGAAAAAAGTGATTCGGAACTTCATACAATATCGAAAGAGGAATTCGTTAAATTAGAAACACGCGAATATTTTGATGGTGAAGACgctgaaatatttgatgattcgaATAACTGTAGTGAAGTTGAAATGTCTGAAAATTTAGGTACGGACGTTTTTGTGTTAGCCGAATCAGGAGATAATTACGACGATAGTTTTGACAAAATGGAGGTACTCGAAACCAGTACAAATGATTGCGATACAAATGAGGATTCTAGTAATTCGAAAGATAGTGGAAGTTCGTCGAAACCAGAAGATaatgaaaagaaacaaaaagaaaaatctgtTTGTCCTGATAAATCTGGATCGCATCAATGCGAAACATGCGGCATAGTTTGTGATAATTCAAATAGTTTACGCATTCATATTAAGTCGCATGCCAGTCCAAGACCACATCAATGTAGCTATTgtgaaaaagaatttaaaacgcGACTGTCCCTCAAAATACACATTCGCTCGCACACTGGAGAACGACCATACGTTTGTGAGGTTTGCCCTAAAACATTCTCTCAAAAAGGGAGCCTCGTGTATCATCGCCGTATCCATTTGGGAAtacgaaattttgaatgtggacTTTGCGATTTTCGAGCACGTTCGCAAAacgatttaaatttacattcacGCACCCACAGTGGAATACGACCGTACACATGTAGTGAATGCgctcaaaaatttacaacatcAAGTAATTTGCAGAAGCACATGAGACGACGACACACGGGAGAAAAAAACTTTCAGACATGTGGGAAAGCTTTTAAGACGTGCAGTGCAGTCAATAACCATAAAGCTATTCATTCAGGTGTAAAAGAATTTAAGTGTGCGCTGTGTCCATATCAAGCTTGCAccaaagcaaatttaaaaattcatgatCGAACTCATAGCGGAGTACAACCGTATTCATGCAGATTTTGTGTGCTTAAGTTTAGCACTGCTAGTAATATGCACAAGCATATACGTAATATACACCAAAAACTAAAGACTCATAAGTGTGATCAATGTACTAGATCATTTTTCTCCAGGGAATCGGCACGGAAGCATATGGTAACCCACACCAAATTGAAACCTTATTCGTGTACCCACTGTCCGATGGCGTACGGATGGTACAATGGTCTTCAAAAACATATGAAGAGCCAGCACGCCGACGCTAAAATGCCAACGGAAAAAAGTTTCTTTATTCAAATGGAGAAAGAGTTAGAACTTCAAAAAGCGGCGACAGAGATTCctctacaattaaaaattgaaggATAA
Protein Sequence: MMNTYDLSELDDIDEVELADQLEQIEVLIPHDEEQITAQHYSIFLKYAKINEKFITEPEQYEKLVKRMVTELHTTGVKKSPSDWLIIMSEWREKIKRDYDEYRYREKPVKFTAEELELLNLLIKDDKTVPSQSQLSCMLDHLEIASESPKLWATINLEMESLGILNRDEHYWRKMYEKWCSRVKLKKQMVDDWDAQNSFSEQKPNNIFNSLELRLIEFLTSRGEMQAPNDDDAAEVQQAQIDILSNYCRVCLTITPEMVYIFSEIPEYGNIVDKINHCATVSPIVKDDGFPQNICQSCMEMLENAYRFKVLCEKSDSELHTISKEEFVKLETREYFDGEDAEIFDDSNNCSEVEMSENLGTDVFVLAESGDNYDDSFDKMEVLETSTNDCDTNEDSSNSKDSGSSSKPEDNEKKQKEKSVCPDKSGSHQCETCGIVCDNSNSLRIHIKSHASPRPHQCSYCEKEFKTRLSLKIHIRSHTGERPYVCEVCPKTFSQKGSLVYHRRIHLGIRNFECGLCDFRARSQNDLNLHSRTHSGIRPYTCSECAQKFTTSSNLQKHMRRRHTGEKNFQTCGKAFKTCSAVNNHKAIHSGVKEFKCALCPYQACTKANLKIHDRTHSGVQPYSCRFCVLKFSTASNMHKHIRNIHQKLKTHKCDQCTRSFFSRESARKHMVTHTKLKPYSCTHCPMAYGWYNGLQKHMKSQHADAKMPTEKSFFIQMEKELELQKAATEIPLQLKIEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01054680;
90% Identity: iTF_01456757;
80% Identity: -