Tver156558.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula vernalis
Gene Symbol
-
Assembly
GCA_958295665.1
Location
OY282560.1:231738276-231739869[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.047 26 8.8 0.1 2 23 212 234 211 234 0.96
2 10 0.19 1.1e+02 6.9 0.5 6 23 243 260 243 260 0.99
3 10 6.2e-05 0.035 17.9 3.9 1 23 266 288 266 288 0.97
4 10 2.4e-06 0.0013 22.3 2.8 1 23 296 318 296 318 0.99
5 10 7.1e-05 0.04 17.7 0.6 1 23 323 346 323 346 0.95
6 10 0.00043 0.24 15.2 3.5 1 23 352 375 352 375 0.97
7 10 0.024 14 9.7 2.1 2 23 384 405 383 405 0.96
8 10 0.00087 0.48 14.3 1.1 1 23 412 435 412 435 0.95
9 10 1.8e-06 0.00098 22.7 1.4 1 23 441 463 441 463 0.98
10 10 1.4e-05 0.0079 19.9 5.0 1 23 469 492 469 492 0.98

Sequence Information

Coding Sequence
atggaTGAGGTTCAGGTAATTTCCCATTATTGTCGCTTATGCCTCAAAGGAAATGATAAAATGCTAAATATTTACGAAGAAAATGAACCCCCAGCAACGATTGCCATGATTCTGTCTCAACATTTCTGGTTCGAGATCAAAGCCGACGATCATTATAGTAAACAAATCTGCATTGACTGCTGGAACcgggttcaaaattttcatcttttttaCTCTCAAATTTATGTTACTCACACTGAATTCTATTCTCGATTCGAGACTGTTTCAAAACATGAGCAGAATGATAACTTCACACAGGGAAAAGAATTGGTCGAGGGAACAATAGGTATCGTCCTTCTAGAGGAATTGGAAAAcggaacaaatttattaaattctaatcaaaAAATGGATCAAATCAATTGTGATATTAAACAAGAGAAAGATGATAACCAGCTTTCTAATGAAAATGAaagtgatgaagatgaaagcagagaaaaaaattcagataaATCAGATAATGAACTGGATGGTGACCAAAGTCACACGGAAAATAATAAGACAAGGAAacgcacaaaaattaaaaaacaaaaaacccgTGAAGAGATGGAACGTATCGAGCAGGAGGATCTACAAATTAGTGAATATTTCAGCATGGTCTGTGAGCTGTGCCCGGCCGAGTTTCGAGTATATCAGGATATAAAAACCCATTATAGAGTAGAACATAAAATGAAAGGATACCTCAAATGctgttctaaaaaatttgtacGACGTTACTTAGCCCTCGATCATATAAAGCGGCATTTAAATCCTGATAAGTTTAAGTGTGAACAATGCAAAAAGTCTTACGCGGATAAACGTGGGCTACAAAATCATATGCATTTTCATTTGCCAAACGAGCAGAAATCTTTCAAATGCTCATATTGTCCGAAAACGTACGCAAAAAATTATCTGTTGCGGAAACATTTACAGCGACACATTATGAAACCTTTTTTTTGTGATCAATGTGAAAAATCGTTTGCTTCCAAATACGTTCTACAGGCACATAAAAGAGGAGTGCACGAGGGAGCGTTTATACATGTTTGCGAAATTTGTGCTAAATCTTTTAAAAGCAAAGTATTCTACGAGCATCATATTAAATCGATGCATAGTGTGACTCCATTACCAAAACAGGAGTGCAAGTTGTGCGGCGCTTGGCTGAAGCACGAGTTCAGCTTACGTAGACACATGAAACGGCATGAAGATGCTACAAAGGAACATATATGTAGCTTTTGTGGAAAGCAATCACCGAATCGTGGAGCACTAAGAAGTCATCAGAAGTATGTTCATATGGTTGAACGAACGCACAAATGCAATATCTGTGATAAGGCTTTTAAAAAAGCTGTGACTCTTAAAGAACATATGACAATACATACGGGTGAAATTTTATACACTTGTCCTCACTGTCcgaaaacttttaattcatcagcAAACATGCATTCACATCGCAAAAAAATGCATCCCCGTGAATTTGAGGAAACCCGAAGGCAGAGAATGTGCTACAATGAAAATGCTCAATAA
Protein Sequence
MDEVQVISHYCRLCLKGNDKMLNIYEENEPPATIAMILSQHFWFEIKADDHYSKQICIDCWNRVQNFHLFYSQIYVTHTEFYSRFETVSKHEQNDNFTQGKELVEGTIGIVLLEELENGTNLLNSNQKMDQINCDIKQEKDDNQLSNENESDEDESREKNSDKSDNELDGDQSHTENNKTRKRTKIKKQKTREEMERIEQEDLQISEYFSMVCELCPAEFRVYQDIKTHYRVEHKMKGYLKCCSKKFVRRYLALDHIKRHLNPDKFKCEQCKKSYADKRGLQNHMHFHLPNEQKSFKCSYCPKTYAKNYLLRKHLQRHIMKPFFCDQCEKSFASKYVLQAHKRGVHEGAFIHVCEICAKSFKSKVFYEHHIKSMHSVTPLPKQECKLCGAWLKHEFSLRRHMKRHEDATKEHICSFCGKQSPNRGALRSHQKYVHMVERTHKCNICDKAFKKAVTLKEHMTIHTGEILYTCPHCPKTFNSSANMHSHRKKMHPREFEETRRQRMCYNENAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-