Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282559.1:155164637-155166562[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.26 1.4e+02 6.5 1.8 2 23 259 280 258 280 0.96

2 10 0.38 2.1e+02 5.9 6.0 1 23 286 309 286 309 0.97

3 10 0.22 1.2e+02 6.7 6.0 2 23 316 337 315 337 0.96

4 10 1.2e-05 0.0068 20.1 3.7 2 23 345 366 344 366 0.97

5 10 4.3e-06 0.0024 21.5 1.1 3 23 377 397 375 397 0.97

6 10 1.8e-07 9.8e-05 25.9 0.2 1 23 403 425 403 425 0.98

7 10 1.3e-06 0.00069 23.2 1.6 1 23 431 453 431 453 0.98

8 10 3.1e-06 0.0017 21.9 1.5 1 23 459 481 459 481 0.98

9 10 0.0037 2 12.3 3.7 1 23 487 509 487 509 0.98

10 10 4.6e-05 0.025 18.3 5.3 1 23 515 538 515 538 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.26	1.4e+02	6.5	1.8	2	23	259	280	258	280	0.96
2	10	0.38	2.1e+02	5.9	6.0	1	23	286	309	286	309	0.97
3	10	0.22	1.2e+02	6.7	6.0	2	23	316	337	315	337	0.96
4	10	1.2e-05	0.0068	20.1	3.7	2	23	345	366	344	366	0.97
5	10	4.3e-06	0.0024	21.5	1.1	3	23	377	397	375	397	0.97
6	10	1.8e-07	9.8e-05	25.9	0.2	1	23	403	425	403	425	0.98
7	10	1.3e-06	0.00069	23.2	1.6	1	23	431	453	431	453	0.98
8	10	3.1e-06	0.0017	21.9	1.5	1	23	459	481	459	481	0.98
9	10	0.0037	2	12.3	3.7	1	23	487	509	487	509	0.98
10	10	4.6e-05	0.025	18.3	5.3	1	23	515	538	515	538	0.98

Sequence Information

Coding Sequence: ATGACTGCCTATTGTCGTCTTTGTACATCgctaaatgaaaataatgatcTATTTAATATATTAGATCCAGTGCATCAAATAACATGTAAAGTGTTAAAATGGTGTAAAATAAACTTACAAGAATTTGACTATTTACCACAAAACTGCTGCTACGCGTGCCTAGACACCTTGAATAGGTTTATCGAGTTTACCAACCAATGTTCGGCCGCACAGGAAACGCTAAAACAAGcgtttagtattaaaattgaacaaagtgTTTTTGAAATTGCTCTTGATGATGTCGTTGCGAATCCCGAAGTGATGTCGCCGGCGACGAAGGAAGTGTATGAAATTAGTTTAGTAGAACAAGAAGAAATAATTGCAGATGATTCGCAACCaattaaatgtgaaaaattatccaaaaggAAGAGTAAGTCTCCAGTTAAGAAACCGATTGTATATCCCGAGCATGAGAGTTCCGCATTTAAAGAGGATCAAGATATCAGTACATGTACAACGGAAGAGGAATGGTTAATTTATGAATCTCCTGCAAGTACTGAAACGACCGAAGATGGGGAGGTTGCAGGCAATGTTGTCGAGGAGGATGAAAGCCTGAATAATGACGTGTTTGATAATGACATTCCGGATACTCTAAACACCACCGTCGAAGTTACAGTAGAATCATCCAGTCCATTGGGAATATTTCCCGACGATTGTGACAAAAACGCAGATGGTTCAATAAATGAGGAAGGCTTGGCTAAACTAAACTTCGATTCGTGGAAGAACTACCCATGGAGTTGTGTCGAGTGCCAAATGCAATGCAGAAGCGTAACCGAATTGCGGGAACATTTTAAATCACACAAACAGACTATAAAGTATCATTGCACTGACTGTAATAAGATTTGTATCAAATATCTAACGTTTTTGAATCACGTGCGTCGAAGGCATAGACCCCACCTGAACTTATGCTGTGATATTTGTTCGAAATTCTTTTGGCATAGTAAATTGTACCGAAAGCATCGTATCACACACGGAGATAACGATTTAACGCAATCTTGTACGATTTGTCAAAAAACATTCCGAAACAGCAAATCGCTGCATGCTCATGTGAAAACACATCTTCCGGCCAATGAGCGAGATTCCAGTCATTGTAAAATTTGTGATAAGTCGTTCGACTTACGCGCGAATCTATTGGTTCACATGCGGATTCATACGGGcacaaagaattttatttgcGACCAGTGCGGGAAAAGTTTTATACAGAAAGGAAACTTGGAGAGCCATCTAATAACTCATACGCGACTTCAACCGTTTAGTTGTCCCATTTGCAAAAAGACGTTTAAAACTCAGATGCGGCTTAATAATCATATGTCTGTGCATTCGGGGCTCAAACCGCATAAATGTGATATATGCGGTCGGCAGTTTCGTGAGAAGGGTACATTGCGCGAACATCTTCGTATACACACGGGTGCTATGCCGTTTTCGTGCGAATTCTGTAATAAACGGTTCCGGTTTAAAGGAATCCTAACCACACATCGGAGGCAGCATACAGGCGAAAGACCATATTCGTGCCTTGAATGTGACCATCATTTTACGAATTGGCCGAATTTTAATAAGCATATGAAACGTCGACATGGCATTAATACAAGTGTTTCGACTCGCAGACCACAAACGATTCCACCTTCCGGTATGCCTccacaatcgaaattaaattttgtggtgcCAACGTTAGAGAACAATGTAGATTTGGATGATATTGAAGAACTAGAAGAAGAGGATGCCACTCCtagtaaattttatgtgaaGGATGATGTGGATGAAGCTATATCAGATATGCAACAGATTATCGAAGAACAAGAACTTCCACAAGTCGAATGTAATGAATCACCATCAATTGAAAGCTATATAACAACCGAAATGCCTGCCCTTGGCTTCTATAATATGTAA
Protein Sequence: MTAYCRLCTSLNENNDLFNILDPVHQITCKVLKWCKINLQEFDYLPQNCCYACLDTLNRFIEFTNQCSAAQETLKQAFSIKIEQSVFEIALDDVVANPEVMSPATKEVYEISLVEQEEIIADDSQPIKCEKLSKRKSKSPVKKPIVYPEHESSAFKEDQDISTCTTEEEWLIYESPASTETTEDGEVAGNVVEEDESLNNDVFDNDIPDTLNTTVEVTVESSSPLGIFPDDCDKNADGSINEEGLAKLNFDSWKNYPWSCVECQMQCRSVTELREHFKSHKQTIKYHCTDCNKICIKYLTFLNHVRRRHRPHLNLCCDICSKFFWHSKLYRKHRITHGDNDLTQSCTICQKTFRNSKSLHAHVKTHLPANERDSSHCKICDKSFDLRANLLVHMRIHTGTKNFICDQCGKSFIQKGNLESHLITHTRLQPFSCPICKKTFKTQMRLNNHMSVHSGLKPHKCDICGRQFREKGTLREHLRIHTGAMPFSCEFCNKRFRFKGILTTHRRQHTGERPYSCLECDHHFTNWPNFNKHMKRRHGINTSVSTRRPQTIPPSGMPPQSKLNFVVPTLENNVDLDDIEELEEEDATPSKFYVKDDVDEAISDMQQIIEEQELPQVECNESPSIESYITTEMPALGFYNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01456766;
90% Identity: iTF_01456766;
80% Identity: -