Tver171731.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- pol
- Assembly
- GCA_958295665.1
- Location
- OY282560.1:333698569-333706542[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0095 5.3 11.0 0.1 1 23 1032 1054 1032 1054 0.94 2 14 5e-07 0.00028 24.5 0.7 1 23 1060 1082 1060 1082 0.99 3 14 0.0004 0.22 15.3 5.0 1 23 1088 1110 1088 1110 0.98 4 14 0.00013 0.072 16.9 0.3 1 23 1116 1138 1116 1138 0.97 5 14 0.0025 1.4 12.8 6.7 1 23 1144 1166 1144 1166 0.98 6 14 0.0015 0.83 13.5 0.4 1 23 1172 1194 1172 1194 0.93 7 14 4.6 2.5e+03 2.5 0.1 7 22 1206 1221 1206 1221 0.91 8 14 0.00099 0.55 14.1 3.0 1 23 1228 1251 1228 1251 0.95 9 14 0.002 1.1 13.1 0.6 2 23 1344 1365 1343 1365 0.94 10 14 9.9e-06 0.0055 20.4 1.4 1 23 1371 1393 1371 1393 0.99 11 14 0.016 9.1 10.2 3.9 1 23 1399 1421 1399 1421 0.92 12 14 0.00042 0.23 15.3 8.1 1 23 1513 1535 1513 1535 0.98 13 14 7.6e-06 0.0042 20.7 0.2 1 20 1541 1560 1541 1562 0.95 14 14 0.0037 2.1 12.3 0.9 1 23 1565 1588 1565 1588 0.91
Sequence Information
- Coding Sequence
- atgaataatttaaaaccacCGAGATTATCTTTGGAAGGtaatcaatatgaaaatttcaaaaaattcaaaatgaagttTGAAAATTACTTAATTGCAATTGAAGCGAACAAAAAAGCTGAAGAAATTAAAGCAGCCATCttgttaaattcattaaatgacGAAATATTGGAGATATATGAAACATTTGAATTCAAAGATGAAACGGACAAAATGAATTAtgacaaaatcataaaaaaatttgagaatcattttaattcttcaaaaaacAGCAATGCCATGTTCAGACACAAATTCTTCAAAAGGTCACAAAATGAAGGTGAAACAATCGAACAGTTTATAACAGCGATTAAAAAGTTAAGTTTAGATTGTGAATTTGGTGAACTGAGAGACAGTCTAATAAAAGACAGAATAATAGCAGGAGTAAAAAACAATGCATTAAGAGAAAAATTACTACGAGAAGACATGTCGCTAGATAAATGCATAAAGATGTGTCAATCTAGTGAAATGGCAGAACAGGGCCTGAAAGTATTAATGGGTGAACAAACAATCCATCaagtaaaaactaataaatataatCCAGTGCGGAATACGTATAATccgaatcaaaataaaaactttcatgTAAATGATCGCGATAGTAAGCTGATGCATGCATGTGGAAAGTGTGGGAAATCACATGAGAAATTCAGGTGTCCAGCATATAATCAAAGATGCAGAATTTGTAAAAAGTTAATGCCACCAAGAAATATACCATTTCCAATTCGGGAGGAATTTTTcaaagaattaaacaaaatggaaaataatggaATTATTCGCAAAGTTAATGAGCCAACTGAATTTTTAAGCCAACTGGTGTTAATAAAGAAAGATGATGGTACCCTCAGAATATGTTTAGATCCACAAATATTAAACGAATGTATACAGCGGGAGCACTATCAAATGCCAACTTTTGAACAAATCAGTGCTAGactaaaaaatgcaaaaatatttagcacACTAGACTGTAGTAAGGCATTCTACCAAATCAAATTGTCACAAAAGAGTTCGTTATACACTACATTCAATACTCCTATAGGCAGGTTTTGCTTTAATCGAATGCCGTATGGGATTATATCTGCAACCGATATTTATCAAAGAAAATTCAAGGAAATTTTTCATGGAATACCTAACATTGAATTGTATGTGGATGAGATACTGATCTGGGCAAATGACGAAAACGAACATGAAGAAATATTAAAGGAAGTAATGATAAGAGCAAgagatttcaatataaaatttaataaagcaaaatgtaaatttggtcaggaatcattaaaatttttgggtcacattttTACTAAAGACGGTATTAAAATAGACGACGAAAAAGTTAAAGCAATCAAGAATATGAAAAAACCGATGGATAAAAAAGCTGTACAACGTTTCTTGGGAATGATTACGTATTTATCGcgctttattaaaaatttatcagatTTAACAGAACCTTTGAGAGAGCTAATACGTAAAAATGTACCTTTTGATTGGAATCAAAAACATGATGATGcatatggaaaaattattcaGATAATAACAGACAGTCCTACATTATCATACTATGATAATAATCAGGAAACGAAACTAAGTGTAGATGCGAGTAGTACTGGAGTTGGAGCAGTCATAACTCAAAATGGAAGACCAATAGCATATGCATCAAAGGCATTTACAAATGCTCAAAGAAACTGGGCTCAAATAGAAAAAGAGGCAAGTGCTATATTATTTGCCTGTGAGAAATTTCATCAGTATATAGCAGGAAAAAGAACTATAGTAGAAACGGATCATAAACCTCTACtgccaatatttaaaaaaccattaagtgAAATTCCCGTGAGgttacaaaaaattagaatgagATTACAAGGATACGACATAATACTAACATACTCACCTGGTAAAGACTTAGTAATAGCTGATACCTTATCTAGAGCGCATTTAGAGGAAAGTTATACAGATAAGGAGTTAATGGATTCATTCATATTGATGGTGAATTTAAGCGAAAATATGACagaaaaaagatttaaagaaaTCATAGAAGAAACAGAAAAAGATGAGGAGATAAAAACATTGAAAAGCCTTGTACGTAACGGTTGGCCAGAATATCATCAAGTACCTGAAATTGCGAAGGCATATTCAACCTTCAGACATGAAATTTATGAATACGAAGGATTAATATGGCGAAACAATTGTTTAATTATACCATTGAAATTAAGAGATGACATGCTTAGAAAACTGCATTATAGCCACATGGGAGTGGATAAAACAAAACTTAGAGCAaaagaattaatattttggccGGGAatgaacaaacaaattatagatATGATTTCGAACTGCAATACGTGTATAAAATACCAACGTTCATTACAAAAAGAAGAAATGATTCAAACAAATACACCAACTGGACCATGGCAAGTCGTCGGaacagatattttttattttaaaaataactactATTTGATAATGGtggattatttttcaaaatatgttgaattagctttattagaaaatttgttagcatcaacaacaataaataaaatgaaatcgatATTTGCGAGATATGGGATTCCATATATAGTCAGAAGCGACGGAGGTCCGCAATACAATAACTTTGCATTCAAGGAATTTTCGAAAACTTACGACTTTCAGCATATTATGTCCAGCCCTTACTATCCTCAAAGTAACGGATTAGCTGAAAGATATATACAAACAGTAAAACGCATGCTTAAAAAAGCAGATGAAGATGGAAGAGATCATTATTTAGCTCTTCTAGAATATCGAAATACACCAATCTCAAAAGACATTAGCTCGCCAAACAAGATAATGTTCGGTAGACAAACTAGAAGTATTTTGCCGATAATCATAAAACATAgtcaagaaaattcaaagcaaATAATGCCTGATGAAAACAAAGCAAGAACTGAGTATCAAATGAAGTCAAAGTGTTATTATAATAGTAATGCTAAAaacttaaaagaatttaatGTAGGTGATCAGGTTAGAGTTCAGGGTAATGATAAAATATGGCATCAGTCAGCTAAGATAGTTGATAAAAACAAGTACGAGTGCATAGTATGCGGAGCGCTTTTCACTCGAAATGGATCACTCAAGCGACATTCACTAATCCATTCAGGTGAGCGACCATACAAGTGTAAAATTTGTGGTCGAAGTTTTACTCAGAGCAATGGCCTAACAGCCCATTCACGAATTCATTCGGGCGACCGACCTTTCAAGTGTAAGTTTTGTGATCAAGCCTTTACTCAGAGGAATTGCCTAACATCGCATATGGTAAAACATACGGGAGAAAAACCTTACACTTGCGTTGTATGCAATACCCGTTTCGCACGAAACGGAGCACTCAAGCGGCATTCACTAATCCATTCAGGTGAGCGACAAttcaaatgtaatttttgtggTCGAGGCTTTACTAAGTGCAGTTGCCTAGTAGCTCATAAGAGACAACATACGGCAGGAAAACCTTACAGTTGCATCGTATGCGGTGCCCGTTTCAAGCGAAGTGAATCACTCAAGCGGCATTCAGAAATCCATTTGGATGAGCGATCGTACAAGAGTAATTTAAGTGGGCGAGGCTTTAATCAGAGCAATAACCTAGCATCACATAAGAGGCGACTTATGGCAGGAAAACCTTACATTTGCGAAACTTGTGGCTCACATTTCAGATACCAGAAATCTTTAACGCGGCACATTTTCATCAAGCACGAAAACCAAAaaCACGCTGAAGTGGAAATAAATGTTGTAAAGCAAAGAGAGGGGAAAAGACAACCTACGCGGAATGGAACTGCTTTAGGAAAGACAATTGCAGAAGAAGTTGACTATAAGGGAACAGAACGACAGGTTTATACTTGCGAATCTAATATAGTAAAAACAGAAGAGATTGAAGAGGAAGAACTACAAGAGACTAAACCAATAAATGTATTCACAATAACCGAAGTTAATTCTATTCGTAAGAAGAGGGGCGACCAAACCGACAAGTGCGTGTGCATGATATGCGGTGCCCTTTTCACAACAAATGGATCACTCAAGCGGCATTCACTAATCCATTCGGGTGTGCGACCGTACAAATGTAATTTATGTAGTCAAAGTTTTACTCAGAGCAATGGTCTAGCATCTCATATGAAACGGCATACGGGTGAAAAACCTTACAATTGCAATATTTGTGGCTCGATTTTCCGATTCAAGACAAGTTTAAACCGGCATTGTTTGAAGCACGAAAAGCTAAAATCCTTAGCTGCGGACGTTTTGGCCACAGAGCACCTGAATATATTTTCGAACTTATCTAATTCCCAagcaaaatcttcaatttatgTTGAAGAGGAGTCTCTTGATATCAAAGTCGAAGCATTTGATGGTGTCACGAAAGAAGCAGATAGTGAAAAAGTGGGACAAgggttcgaaatttttttttactctaagCTGATACTCGATTATGACACGGAAAACGAAGATAACGCTAAACGAACTGACCTGGATACTAGCAAATTATACCACTGCACAAACTgcagtaaaaaatattacaccAAAGCCCATTTGCAACGCCACTTAAAAACTCATAACGGTGTTAAACTTTTCGAGTGCACCATATGTGATATTCGGTTCACCCAGAAGGTATCTCTGAAGCGGCATATGGAGGAAAAGCCTTACAAATGTGAAAAGTGTGACGCATCATTTCTACAGAAGTACTATTTAGAGCGACACGCTTTGTTCGTTCACAATATTATTAAGGAGAAGAGACAAACCACAGAGGAGACCCACGAATGTGAAACATGTCATCGATTATTCACGTGTAAGGCGCCGCTAGCGAATTGGTTTTGCTTACTGAACCATTATATTTGCTGA
- Protein Sequence
- MNNLKPPRLSLEGNQYENFKKFKMKFENYLIAIEANKKAEEIKAAILLNSLNDEILEIYETFEFKDETDKMNYDKIIKKFENHFNSSKNSNAMFRHKFFKRSQNEGETIEQFITAIKKLSLDCEFGELRDSLIKDRIIAGVKNNALREKLLREDMSLDKCIKMCQSSEMAEQGLKVLMGEQTIHQVKTNKYNPVRNTYNPNQNKNFHVNDRDSKLMHACGKCGKSHEKFRCPAYNQRCRICKKLMPPRNIPFPIREEFFKELNKMENNGIIRKVNEPTEFLSQLVLIKKDDGTLRICLDPQILNECIQREHYQMPTFEQISARLKNAKIFSTLDCSKAFYQIKLSQKSSLYTTFNTPIGRFCFNRMPYGIISATDIYQRKFKEIFHGIPNIELYVDEILIWANDENEHEEILKEVMIRARDFNIKFNKAKCKFGQESLKFLGHIFTKDGIKIDDEKVKAIKNMKKPMDKKAVQRFLGMITYLSRFIKNLSDLTEPLRELIRKNVPFDWNQKHDDAYGKIIQIITDSPTLSYYDNNQETKLSVDASSTGVGAVITQNGRPIAYASKAFTNAQRNWAQIEKEASAILFACEKFHQYIAGKRTIVETDHKPLLPIFKKPLSEIPVRLQKIRMRLQGYDIILTYSPGKDLVIADTLSRAHLEESYTDKELMDSFILMVNLSENMTEKRFKEIIEETEKDEEIKTLKSLVRNGWPEYHQVPEIAKAYSTFRHEIYEYEGLIWRNNCLIIPLKLRDDMLRKLHYSHMGVDKTKLRAKELIFWPGMNKQIIDMISNCNTCIKYQRSLQKEEMIQTNTPTGPWQVVGTDIFYFKNNYYLIMVDYFSKYVELALLENLLASTTINKMKSIFARYGIPYIVRSDGGPQYNNFAFKEFSKTYDFQHIMSSPYYPQSNGLAERYIQTVKRMLKKADEDGRDHYLALLEYRNTPISKDISSPNKIMFGRQTRSILPIIIKHSQENSKQIMPDENKARTEYQMKSKCYYNSNAKNLKEFNVGDQVRVQGNDKIWHQSAKIVDKNKYECIVCGALFTRNGSLKRHSLIHSGERPYKCKICGRSFTQSNGLTAHSRIHSGDRPFKCKFCDQAFTQRNCLTSHMVKHTGEKPYTCVVCNTRFARNGALKRHSLIHSGERQFKCNFCGRGFTKCSCLVAHKRQHTAGKPYSCIVCGARFKRSESLKRHSEIHLDERSYKSNLSGRGFNQSNNLASHKRRLMAGKPYICETCGSHFRYQKSLTRHIFIKHENQKHAEVEINVVKQREGKRQPTRNGTALGKTIAEEVDYKGTERQVYTCESNIVKTEEIEEEELQETKPINVFTITEVNSIRKKRGDQTDKCVCMICGALFTTNGSLKRHSLIHSGVRPYKCNLCSQSFTQSNGLASHMKRHTGEKPYNCNICGSIFRFKTSLNRHCLKHEKLKSLAADVLATEHLNIFSNLSNSQAKSSIYVEEESLDIKVEAFDGVTKEADSEKVGQGFEIFFYSKLILDYDTENEDNAKRTDLDTSKLYHCTNCSKKYYTKAHLQRHLKTHNGVKLFECTICDIRFTQKVSLKRHMEEKPYKCEKCDASFLQKYYLERHALFVHNIIKEKRQTTEETHECETCHRLFTCKAPLANWFCLLNHYIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -