Tver065383.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:24774852-24782086[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00033 0.18 15.6 1.9 3 23 324 345 323 345 0.96 2 11 0.00046 0.26 15.1 1.8 2 23 371 393 370 393 0.94 3 11 0.00016 0.09 16.6 5.3 2 23 405 427 404 427 0.95 4 11 0.00039 0.22 15.3 5.1 2 23 453 475 452 475 0.95 5 11 0.00036 0.2 15.5 3.3 2 23 501 523 500 523 0.95 6 11 0.00039 0.22 15.3 5.1 2 23 549 571 548 571 0.95 7 11 0.00039 0.22 15.3 5.1 2 23 597 619 596 619 0.95 8 11 0.00011 0.06 17.1 2.8 3 23 646 667 645 667 0.97 9 11 0.00013 0.074 16.8 0.6 2 23 891 913 891 913 0.95 10 11 0.0013 0.72 13.7 1.3 3 23 938 959 937 959 0.95 11 11 0.00022 0.12 16.2 0.3 3 23 985 1006 983 1006 0.95
Sequence Information
- Coding Sequence
- ATGGATCTGATCAAGGGAACCACCACAGATTTAAATTTGGTATGTCGTACATGTTTAAATGAATCGAATGATATGAAATCTATATTTATGAATGATGGCAAAGCTAATATATGTAAAATGTTAAAGTCGTGTTCGGGATTAAAAATTCAACCATTTGATAAATTACCGACCAAAATATGCGAGACTTGCTTAAAGAAAGTACACATCTCGTATGAGTTTCGGCAACAGTGCGAAATTACGCATAATActttggtaaattttataagtgatCATCCAAATGAGACATACGAAACAAAACTGGAGGACGATAATTTGCTCCTCATAATTAATGGAGGAAATGCTTGTGAAGTTTTGATGGATTTAGTATGTCGTACCTGTTTAAATGAATCGAAtaatatgaaatcgatatttatGAATGATGGAAATGATATAAGTAAAATGTTACAGTATTGCTCTGGGTTAAACATTCCGATAATGGAAGGTTCCCCGAAAAAAATATGTTCGGATTGTTTAAAAAAGCTACGCATTTCGTATGAGTTTCGAAGGCAGTGtgaacttttgttaaattttatgggGACATTAATAAATAGAGAGCCCGAAAGCGAATCGCGATCTGAAACTCCACCAACGAAGAAAATTAAAGGGAATGCTAGCGACATGTTAGAGGAAGATTGCAGCTCAAATACGATCGAAATTAATTGTGACAAAAAGAACAACATTGACAAGCCGAACGATGGAGACGAAGAGTCCGGCATTGAATGCGACAACACTGTTGGAAATGGAATGCTAGTTTGTGACAAAAATGATAACTCGATCATTGAGGCAACCCCAATCGTGATTCTTGAATCGGACGTTGATTTTAAACGAGacgattttttggttttagaaaccCACCTCAAGGGCAGCAACGATCTTAAGCGACAACAACCAAAAGCACTTGTAGAACCCATTCAAACTAAAACAGAAATCtgcaaaatttgtcaaaaggtGTTCGCTGgaatgaaaaatctaaaaatccatatgaaacacaaacacaaagagcattattcaataataaacgGGGAATGTGAGGGGTCTGTATTGCCCACTCTATCTCCATTTACAGAACAACCCTGCAAACTTTGTCAGAAGTCCTTTGCTACGGTGAAATCTCTCAAAATCCATATGATACATAAACACATATTGCACACTCAATCTCCATTTACAGAACAACCCTGCAAACATTGTCAGAAGTCCTTTGCTACGGAGAAATCTCTCAAAATCCATATGAAACACAAACACAAAGAGTATTGTTCAATAATCAACGGGGAATGTGAGGGGTCTATATTGCCCACATTATCTCCATTTACAGAACAACCCTGCAAACATTGTCAGAAGTCCTTTGCTACGGTGAAATCTCTCAAAATACATATGAAACACAAACACAAAGAGCATTGTTCAATAATCAACGGGGAATGTGAAGGATCTTTATTGCCCACACTATCTCCATTTACAGAACAACCCTGCAAACTTTGTCAGAAGTCCTTTGCTACGATGAAATCTCTCAAAATACATATGAAACACAAACACAAAGAGCATTGTTCAATAATCAACGGGGAATGTGAGGGGTCTATATTGCCCACATTATCTCCATTTACAGAACAACCCTGCAAACATTGTCAGAAGTCCTTTGCTACGGTGAAATCTCTCAAAATACATATGAAACACAAACACAAAGAGCATTGTTCAATAATCAACGGGGAATGTGATGGGTCTATATTGCCCACATTATCTCCATTTACAGAACAACCCTGCAAACATTGTCAGAAGTCCTTTGCTACGGTGAAATCTCTCAAAATACATATGAAACACAAACACAAAGAGCATTGTTCAATAATCAACGGGGAATGTGAGGGGTCTATATTGCCCACATTATCTCCATTTACAGAACAACTCTGCAAACATTGTCAGAAGTCCTTTGCTACGAtgaaatctctaaaaatccaTATGAAACTTGGACACCGAGAGCTGATTAAAAACGGGATGTTTCCATATGTCCATAAACCAAAACTCAAGACGACAGTGGAAAATAAATCACGAAGTGAAACTATAGAAACTGATTCAAAAGGGCCTGTTAAATGCCATGAATCATTCGAACCAAAATTGGAGGATGCgagtttacataaaattaacggTGATGAGGAAGAGCTGATTAAAAACGGGATGTTTCCATATGTCCATAAACCAAAACTCAAGGCGACAACGGAAAATGAATCACGAAGTGAAACTATAGAAACTGATTCAAAAGGGCCTGTTAAATGCCATGAATCATTCGAACCAAAATTGGAGGATGCgagtttacataaaattaacggTGATGAGGAAGACTGTAGCTCATCCAGTTTGATagaaattaaaatcgagccgGATGACGGAGACGAAGAGTCCGGCATTGAATGCGACAAGACTAATGGAAATGAAATGCAGGTTTGTGAGAAAACTGACAAACCAATCATTGACGAAACCCCAATCATGGTTCGTAAATCGAAATCATCGAGCGTTAATGCTAAACAAGACACGTCCTCGATTTTAGAAACACGCATAGGGACCCGCAATGTTATTAGGCTGCAACAATCAAAACTCAACCAACAAGCTGAGCTGTTTGCAGAACCCATAACATCTAAACCAGAATCCTGTGAAATTTGTCAAAAGTCATTCGTGGCGTTGAGAAATCTGAAAATTCATATGAAACTCAAACATCTAATGcagtatacaaaaattaatgggGAAGGCGAGCGAACTATAGAGCATACTGCatctaaaatagaaatttgcgaaatttgtgaaaaatcatTCGCTACATTGAGATGTCTCAGGATACATAAGAAACTGGCGCACAaagacaaaaatcattttaaaattaatcggcGAATTGTGCGCATTGTAGAGCCCACTCAAACTAAAACTACTATCTGTAGAATTTGTAAAAGGGTGTTCGCTGCGtcgaaaaatcttaaaatccatATGAAACTTGCACACGGAGAGCTGGCTAGAAAGGGGATCTTTACGCATGGTCATAATATAAAATCACACTTGCACGCATGCATTCATCAGAAAAATCCCCCTAAGCCGCCGGATTCGAAAGTAGATGAATGGAACAGGAAAGATTCACAAGGTTTAGCAACAATTGGGCTAAATGTGAATAATAATCAATTATGGTTCATATTCGTAATGCTGCTTAAGGCGAAGGGTGCATGGGTAGCATTGCAAGAATACCACGAGAATAGTATAGCAAATAGTTAA
- Protein Sequence
- MDLIKGTTTDLNLVCRTCLNESNDMKSIFMNDGKANICKMLKSCSGLKIQPFDKLPTKICETCLKKVHISYEFRQQCEITHNTLVNFISDHPNETYETKLEDDNLLLIINGGNACEVLMDLVCRTCLNESNNMKSIFMNDGNDISKMLQYCSGLNIPIMEGSPKKICSDCLKKLRISYEFRRQCELLLNFMGTLINREPESESRSETPPTKKIKGNASDMLEEDCSSNTIEINCDKKNNIDKPNDGDEESGIECDNTVGNGMLVCDKNDNSIIEATPIVILESDVDFKRDDFLVLETHLKGSNDLKRQQPKALVEPIQTKTEICKICQKVFAGMKNLKIHMKHKHKEHYSIINGECEGSVLPTLSPFTEQPCKLCQKSFATVKSLKIHMIHKHILHTQSPFTEQPCKHCQKSFATEKSLKIHMKHKHKEYCSIINGECEGSILPTLSPFTEQPCKHCQKSFATVKSLKIHMKHKHKEHCSIINGECEGSLLPTLSPFTEQPCKLCQKSFATMKSLKIHMKHKHKEHCSIINGECEGSILPTLSPFTEQPCKHCQKSFATVKSLKIHMKHKHKEHCSIINGECDGSILPTLSPFTEQPCKHCQKSFATVKSLKIHMKHKHKEHCSIINGECEGSILPTLSPFTEQLCKHCQKSFATMKSLKIHMKLGHRELIKNGMFPYVHKPKLKTTVENKSRSETIETDSKGPVKCHESFEPKLEDASLHKINGDEEELIKNGMFPYVHKPKLKATTENESRSETIETDSKGPVKCHESFEPKLEDASLHKINGDEEDCSSSSLIEIKIEPDDGDEESGIECDKTNGNEMQVCEKTDKPIIDETPIMVRKSKSSSVNAKQDTSSILETRIGTRNVIRLQQSKLNQQAELFAEPITSKPESCEICQKSFVALRNLKIHMKLKHLMQYTKINGEGERTIEHTASKIEICEICEKSFATLRCLRIHKKLAHKDKNHFKINRRIVRIVEPTQTKTTICRICKRVFAASKNLKIHMKLAHGELARKGIFTHGHNIKSHLHACIHQKNPPKPPDSKVDEWNRKDSQGLATIGLNVNNNQLWFIFVMLLKAKGAWVALQEYHENSIANS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -