Tver028633.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282558.1:195321612-195322911[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.3e-06 0.0035 21.0 0.8 1 23 117 140 117 140 0.98 2 10 6.5e-05 0.036 17.8 0.3 1 23 143 165 143 165 0.98 3 10 5.1e-05 0.028 18.1 0.2 2 23 172 193 172 193 0.97 4 10 3.6e-06 0.002 21.8 1.5 1 23 199 221 199 221 0.98 5 10 0.00011 0.062 17.1 1.8 1 23 227 249 227 249 0.98 6 10 0.00058 0.32 14.8 6.6 1 23 255 278 255 278 0.95 7 10 0.00017 0.095 16.5 2.9 1 23 284 308 284 308 0.98 8 10 4.3e-05 0.024 18.4 1.1 1 23 315 337 315 337 0.98 9 10 9.9e-05 0.055 17.2 0.3 1 23 353 376 353 376 0.95 10 10 0.93 5.2e+02 4.7 0.4 1 23 379 401 379 401 0.89
Sequence Information
- Coding Sequence
- ATGGTTAATGATCCATGTTTGATTAATTTGTGGTCATCGCCAACTGAAAAATTTGACCAGGAATTTCATCAGATAAAAGATGTTCTCGCTAGTTTTGCCTCGGTTCTGatcGATGAAAATGAAAGTTTACCGCAAGGTATATGTGAAAAGTGCGAAGGAAACATCTACTTTGCGCTCacgtttaaacaaaaatgtgagAGATCAGAAGAAATATTACGGAACGTAATACAAAGGCAAGCTGAAAAAACATTTCGCATTGAATTAATTGTACCGGCCGCTAACCAAGAAGAAATGGTCGCAGAAGAATCTTGTGATCTACAAGATACTATGACTCCAATCGAAACCGGTTATACATGTGACCAGTGCTCAGAAACATTCGAGCAGCGCGTACAATTAAACCAACATATTAAAAAGGTTCATAAACTCTTTAAATGTCAGGAATGTGGCGAATATTTTGCGCAACCACAAATCCTTAAGAGGCATCTCAAAATCCATGCGGGCATCAAAAATGAAGTGTGTCCCTTTTGCGAAAGAGGCTTTTTACGGTCGGATGACTTGAAACGTCACATCCGCGTTCATACGGGCGAAAAACCATTCAAATGTGAACAATGTCCAAAAACTTACAAGCAAAGCACGGAACTAATTCAACACAAACTTACTCACTCTAATGTTAAGCAATTCACATGCAAATTGTGCAATAAATCATTGTCAACCCGGACTGGATATTATATACACATGAAAGTGCATAACGGCCAAAAGGATCACCAGTGCCActtgtgtaataaaaaattcgtgACAAGCTGTGAACTAACCTCGCATGTCCAGTATATTCATAAGAgagaaaaactttttaaatgtacGATTCCTGATTGTTCGAAACGATTTGTTACTAAAATCTGTTTGAATCAACACCTGAAGAATCATCCTTCAAAAACGATGGAATATCAATGCCCGATATGTAAAGAACAATTAGCAACCTCGCAGACGTTTAAGAAGCACATGAAATTGCATAAAACGACGGTGACGGATGACTTAGACGATCatatagaaaacaaatttatgtgtGAAATTTGTGCAAAAGTGTTCGAATTCTATTCAACGCTAAAGACTCATATTATGGCGAGCCATACGTCTTTTATCTGTGAATTATGCGGAATTACTTGTttagattatgatgaatttgtcGTACATAAGGACTTACATAACGATGACCTGGACGCATGCGATGGAGTCGTAGAATGA
- Protein Sequence
- MVNDPCLINLWSSPTEKFDQEFHQIKDVLASFASVLIDENESLPQGICEKCEGNIYFALTFKQKCERSEEILRNVIQRQAEKTFRIELIVPAANQEEMVAEESCDLQDTMTPIETGYTCDQCSETFEQRVQLNQHIKKVHKLFKCQECGEYFAQPQILKRHLKIHAGIKNEVCPFCERGFLRSDDLKRHIRVHTGEKPFKCEQCPKTYKQSTELIQHKLTHSNVKQFTCKLCNKSLSTRTGYYIHMKVHNGQKDHQCHLCNKKFVTSCELTSHVQYIHKREKLFKCTIPDCSKRFVTKICLNQHLKNHPSKTMEYQCPICKEQLATSQTFKKHMKLHKTTVTDDLDDHIENKFMCEICAKVFEFYSTLKTHIMASHTSFICELCGITCLDYDEFVVHKDLHNDDLDACDGVVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01456712;
- 90% Identity
- iTF_01456712;
- 80% Identity
- -