Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282560.1:231725502-231730087[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.029 16 9.5 1.7 2 23 315 337 314 337 0.97

2 10 0.57 3.1e+02 5.4 0.2 6 23 346 363 346 363 0.98

3 10 3e-06 0.0017 22.0 0.6 1 23 369 391 369 391 0.98

4 10 2.8e-06 0.0015 22.1 0.8 1 23 399 421 399 421 0.98

5 10 8.7e-06 0.0048 20.6 0.3 1 23 427 450 427 450 0.96

6 10 0.02 11 9.9 1.1 1 23 456 479 456 479 0.96

7 10 0.41 2.3e+02 5.8 0.4 2 23 488 509 487 509 0.91

8 10 4.8e-06 0.0027 21.4 0.3 1 23 516 539 516 539 0.97

9 10 9e-07 0.0005 23.7 0.5 1 23 544 566 544 566 0.97

10 10 5.1e-06 0.0028 21.3 2.0 1 23 572 595 572 595 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.029	16	9.5	1.7	2	23	315	337	314	337	0.97
2	10	0.57	3.1e+02	5.4	0.2	6	23	346	363	346	363	0.98
3	10	3e-06	0.0017	22.0	0.6	1	23	369	391	369	391	0.98
4	10	2.8e-06	0.0015	22.1	0.8	1	23	399	421	399	421	0.98
5	10	8.7e-06	0.0048	20.6	0.3	1	23	427	450	427	450	0.96
6	10	0.02	11	9.9	1.1	1	23	456	479	456	479	0.96
7	10	0.41	2.3e+02	5.8	0.4	2	23	488	509	487	509	0.91
8	10	4.8e-06	0.0027	21.4	0.3	1	23	516	539	516	539	0.97
9	10	9e-07	0.0005	23.7	0.5	1	23	544	566	544	566	0.97
10	10	5.1e-06	0.0028	21.3	2.0	1	23	572	595	572	595	0.98

Sequence Information

Coding Sequence: ATGGAAGTTAAAAAAAGGCCAAGACGACCAAATTTCTCAGAAAATGATCTGATGCTActtctaaaaatattagaaagtcATCGAGAAGTTATCTCatatgaTTCCGAGTTATATGGAGATGAACTTAACAAAGCCTGGGAAAACTTGGCAACAGAATTTTCAGCGCAAACCTGTATAGCGCGATCGGGAGAAGAAAtacgaaataaattcaaagatttaaaatcgctcacaaaaaaaaagatcgCGGAAATTAACAGTTACCAAAAAGGAACAGGAGGTGCTCGACCGAAGGTATTATCGGACGTGGAAAAATTAGTAGAAAAATTAGCGGGCGAAAATGCAATGTCTGGGTTTAACTATTCCGCAGATTGTTTCTCTGGAAACCTCATTGTCATTATTACTGAAGAAGAGGACGACCAGATTGTAGTATTGGATGGGGAGGAACCAAATCCGGGAACCACAAATGCAGGACCGCCAATAACACAAACCCAACAAAGTAGGGGGCCGtccaaatctaaaattaaagccATAAAGGAGGGAAATGTTAGTAAAAGTGTTTGCGTTGAATGCTGGTCAAACGtcgataattttcatttgttttacaCAAAGGTTTATACCACTCACAATGAATTCTATTCAAACATTCACGATGAacataaatcaaaacttgacgGAACAATCGAAGTAGAGAGTGCTGATCCTGAAAATAAACCTACAATTAAATCTGAAAGGGTAAATACTTCCAAAGGTAAAGCGACACCGCAAATTATCGAGAATATACCGGAAGATCTTGGTAACGATAATAGTTGCTCCGGTGCACCCAAGTTAAACCCTAAACCTAAAATGTCCCGAAACAAACTgcggaaatctcgaaaaattgaTCCAGATGAACAAGAAAAAACTAAAGAGGAAAATAACCAAATCCATGAGAGATTTATGATGGAGTGTGAAAAGtgtaatttccattttgatacGTTTAATGAAGCTCAGATTCATTATCGCACCGAACACAAAACACACGGGTATCTGCGCTGTTGTGATACAAAATTTAAGTCTCGCCCTACCGTCGTGGAACATTTACAACGTCATCTTAACCCAGACGGATTTAAATGTGAGCAATGCAATAAAACGTTTGTTAATAAACGCGGCCTAGCTATACATATAGAAAGGCATTTATCTTCCGAGGATAAACCATTCAAGTGTACTGAATGCCCTAAAAGTTATATTCGAAGTTTTTTATTAGAGAGACACCTGGAATCGCATAAAGATCTACCAAAATATATTTGCGACGATTGTGGTAAGGAGTACAGTAACAAAATAACGCTGAACATTCATAAGAGGAATGTACACGATCGTACTTTGTTCTATATTTGTGATGTGTGCGCTAGAGAATTCCGCAATAAACTTGATTTTGATCTACACCATCGAAATGTACACGATTCTGTGCCTCAACCAAAAGTCCAATGTAAAGTTTGTGCTGCATGGTTGAAAACCAAACAATCTCTACGGCAGCATATGGTTCGTCATCAGACTGTTAAACTAATGCATCCTTGTGGCGAATGTGACAAAGCATTTCCGTTCCGCTGGGCTCTTCGGAACCATATTAGGACATTGCATACTAAAAAACTCTTTGACTGTAATCTGTGCGATAAACAATTTAAGAGACCCGTGAGTTTGAAGGAGCATATGGCTACGCATACCGGGGTTTCATTGTACCAGTGTCAGTACTGCCCTAAAACGTTTAACTCATCGGCTAATATGTCTTCCCATAGGAAAAAGGAACATAAAACTGAGCGAGAAGCACACCTCAAAATGAAGGCGGCCGGATTGGCTTAA
Protein Sequence: MEVKKRPRRPNFSENDLMLLLKILESHREVISYDSELYGDELNKAWENLATEFSAQTCIARSGEEIRNKFKDLKSLTKKKIAEINSYQKGTGGARPKVLSDVEKLVEKLAGENAMSGFNYSADCFSGNLIVIITEEEDDQIVVLDGEEPNPGTTNAGPPITQTQQSRGPSKSKIKAIKEGNVSKSVCVECWSNVDNFHLFYTKVYTTHNEFYSNIHDEHKSKLDGTIEVESADPENKPTIKSERVNTSKGKATPQIIENIPEDLGNDNSCSGAPKLNPKPKMSRNKLRKSRKIDPDEQEKTKEENNQIHERFMMECEKCNFHFDTFNEAQIHYRTEHKTHGYLRCCDTKFKSRPTVVEHLQRHLNPDGFKCEQCNKTFVNKRGLAIHIERHLSSEDKPFKCTECPKSYIRSFLLERHLESHKDLPKYICDDCGKEYSNKITLNIHKRNVHDRTLFYICDVCAREFRNKLDFDLHHRNVHDSVPQPKVQCKVCAAWLKTKQSLRQHMVRHQTVKLMHPCGECDKAFPFRWALRNHIRTLHTKKLFDCNLCDKQFKRPVSLKEHMATHTGVSLYQCQYCPKTFNSSANMSSHRKKEHKTEREAHLKMKAAGLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -