Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282560.1:333682794-333685219[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.7e-05 0.032 18.0 0.8 1 23 214 236 214 236 0.96

2 9 1.1e-06 0.0006 23.4 1.7 1 23 242 264 242 264 0.98

3 9 0.0002 0.11 16.3 1.4 3 23 272 293 271 293 0.90

4 9 0.00024 0.13 16.0 0.2 1 23 379 401 379 401 0.97

5 9 2.9e-07 0.00016 25.2 2.7 1 23 407 429 407 429 0.99

6 9 0.0002 0.11 16.3 1.6 1 23 436 459 436 459 0.95

7 9 2.3e-05 0.013 19.2 0.6 1 23 548 570 548 570 0.96

8 9 8.9e-07 0.00049 23.7 1.0 1 23 576 598 576 598 0.99

9 9 0.00086 0.48 14.3 5.2 1 23 604 626 604 626 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.7e-05	0.032	18.0	0.8	1	23	214	236	214	236	0.96
2	9	1.1e-06	0.0006	23.4	1.7	1	23	242	264	242	264	0.98
3	9	0.0002	0.11	16.3	1.4	3	23	272	293	271	293	0.90
4	9	0.00024	0.13	16.0	0.2	1	23	379	401	379	401	0.97
5	9	2.9e-07	0.00016	25.2	2.7	1	23	407	429	407	429	0.99
6	9	0.0002	0.11	16.3	1.6	1	23	436	459	436	459	0.95
7	9	2.3e-05	0.013	19.2	0.6	1	23	548	570	548	570	0.96
8	9	8.9e-07	0.00049	23.7	1.0	1	23	576	598	576	598	0.99
9	9	0.00086	0.48	14.3	5.2	1	23	604	626	604	626	0.97

Sequence Information

Coding Sequence: ATGAGCTTAAACATCGATATAAATAATTGCCGAGTTTGTATGAAAACTGCTGATGGAATACCAATTTATTCGGATAGCGAAACTgggaaaaaattccaattttgtacACAATTAGAAATTTCAAAAACTGAtgatttaccaaaaataatttgtaataaatgtttTGGGCGGTTGGAAATCGCTTACGACTTTCGTAAACAGGCGGAGTCTTCAGATAAATATTTAAGGCAGATCCTGACACGTAATATGAAGGAACTAAACCAATCGGGACAGGTGAAACAGTGTCTGGGCGATGAAATGTTTTTAGAAATTAACACAACGCGGATTAAAGTGGAACAATTCGACCAAATCGAGCAACTGACCAATGTTAAGCCTCAACAGATTTCCAGAGTAAATATACCATCCACGCAAAATGAAATTGGTACAGCAGAGATAATAGAAGAAAGCATTCATTATAAGGGAACCTCTGATAGAGTTCCGGGATACGCGGTTTTTCAGGAATATAGCGCCAGCGCGGGTGAATCTGATATAATAAAAACGGAAGAGATTGAAGAGGAAAAAATACCAGAGATcaaaccaataaatttattcacaGTAACGAAACTTAATTCTAATAAGGGGGGCGACCATAAAGGCAAGCACGAGTGCTTAGTATGCGGAGCCTTTTTCACACGAAAAGCATCACTCCAGCGGCATTCCCTAATCCATTCAGGTGAGCGACCGTACAAGTGTAAGTTTTGTGGTCGCGGCTTTATTCAgagcaataatctaaaattacaTATGAATCAACATAAGAGAAGAAAACCTAACATTTGCGAAATTTGTGGCTTACATTTCCGATTCAACTCAAGTTTAAAGCGGCACGTTGTCAACAAACACGAAAACCAAAagAAAGCTGAAgggaaaataaaagttttaaataataaagggATGGAAAGATCAAGCACGCGGAATACAACTGCTGCATTAGAAACAATAGAAGAAGGTGTTCACTTTAAGGAAACAGAAATATCTGATATAGTAAAAACGGAAGATATTGAAGAGGAGAAAGTACAACAGACTAAACCAATAAATCTATTCACAATAACGGAAGTTACTTCTATTCGTAGCGACGAGTACGAACAAACTGACAAATACGAGTGCTTACTATGCGGAGCCCTTTTTACACGAAATGCATCACTCAAGCGGCATTCCCTAATCCATACAGGTGAGCGACCATAcaagtgtaaattttgtggtcGAGGCTTTAATCAAAGCAATAATCTAACAACCCATATGAGACAACATAAGAGAGGAAAGCAGCCCTACATTTGCGAAACTTGTGGCGTACATTTCCGATACAAAGCAAGTTTCAAGCGGCATGTTATCGTCAAACACGAAAACCGAAaaAAAGCTGAAGgggaaataaaagttttaacgCAAAAAGGGCGGATAACACCACCCTCGCGAAATACAACTGCTTTATTAGAGACAAGAGAAGGTATTTATTTTAAGGAAACAGAACGACAGGTTCTGATATCTGATATAGTAAAAACGGAAGAGATTGAAGAGGAGAAAGTACAACAgactaaaccaataaatttattcaaaataacggAAGTTACTTCTATTCGTAGGAATGAGGGCGACAAAACTGACAAGTACGAGTGTATCATATGCAGTACCATTTTCACCCGAAAAGGATCACTAAAGCGGCATTTACGAATCCATTCGGGTGAGCGACCATACAAGTGTAATTTATGTGGTCGATCCTTTAATCAGAGCTATTCCGTAGCATCCCATATGAGACTACATACGGGTGAAACACCTTACAATTGCAAAACTTGTGGCTTACATTTCCGATACAGGACAAGTTTAACACGGCACAGTTTGAAGCACGGAAAGCAAAAAGTATGTAATGTATGGTCAATACTAGTACGCTAA
Protein Sequence: MSLNIDINNCRVCMKTADGIPIYSDSETGKKFQFCTQLEISKTDDLPKIICNKCFGRLEIAYDFRKQAESSDKYLRQILTRNMKELNQSGQVKQCLGDEMFLEINTTRIKVEQFDQIEQLTNVKPQQISRVNIPSTQNEIGTAEIIEESIHYKGTSDRVPGYAVFQEYSASAGESDIIKTEEIEEEKIPEIKPINLFTVTKLNSNKGGDHKGKHECLVCGAFFTRKASLQRHSLIHSGERPYKCKFCGRGFIQSNNLKLHMNQHKRRKPNICEICGLHFRFNSSLKRHVVNKHENQKKAEGKIKVLNNKGMERSSTRNTTAALETIEEGVHFKETEISDIVKTEDIEEEKVQQTKPINLFTITEVTSIRSDEYEQTDKYECLLCGALFTRNASLKRHSLIHTGERPYKCKFCGRGFNQSNNLTTHMRQHKRGKQPYICETCGVHFRYKASFKRHVIVKHENRKKAEGEIKVLTQKGRITPPSRNTTALLETREGIYFKETERQVLISDIVKTEEIEEEKVQQTKPINLFKITEVTSIRRNEGDKTDKYECIICSTIFTRKGSLKRHLRIHSGERPYKCNLCGRSFNQSYSVASHMRLHTGETPYNCKTCGLHFRYRTSLTRHSLKHGKQKVCNVWSILVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -