Tver098574.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula vernalis
Gene Symbol
-
Assembly
GCA_958295665.1
Location
OY282559.1:252911535-252926909[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00033 0.18 15.6 3.4 1 23 232 254 232 254 0.98
2 11 0.005 2.8 11.9 7.9 3 23 262 282 261 282 0.97
3 11 8.7e-05 0.048 17.4 6.5 1 23 288 310 288 310 0.98
4 11 0.0013 0.73 13.7 1.6 1 23 316 338 316 338 0.95
5 11 1e-05 0.0057 20.3 0.8 1 23 344 366 344 366 0.97
6 11 3.4e-06 0.0019 21.8 0.1 1 23 372 394 372 394 0.98
7 11 0.00013 0.072 16.9 1.4 1 23 399 421 399 421 0.97
8 11 0.0002 0.11 16.3 0.2 1 23 427 450 427 450 0.95
9 11 0.00018 0.1 16.4 0.1 1 23 578 600 578 600 0.98
10 11 0.018 10 10.1 4.9 1 23 687 709 687 709 0.96
11 11 0.00013 0.072 16.9 4.3 1 23 719 741 719 741 0.97

Sequence Information

Coding Sequence
atgCCATACTTGCAGTTAGCGGATGGTAATAATATAACAATACAGAAGGAAACAAAAGGAAATATAACCCATGCAAATAAGGGGGTTGTGAGGAGGATGGTTTATGTAAGCGATTCATTTCAACAAGGAACAACTCAAAGGGTAATTACAACAGGCTCACCAGCCACAACAGCTGTGACACATAAAAAACATGATGTACTGAGTATGGGTTgcgataaaaattgtaattgcaaTGAGAACACAACGACAGCTATAACACCAATTTTTATTCAATCAGATCAATCAAATCATTCAATTGCCAATGGGATAATCGATTCAAAAACCCAAACCGTTTTGACGACATCAGGAGGCGGTAAAGCAACACATTTTATGAGCCCCATTGGCCCGCTGCAACTAACCGCCGAGGAGTATAGTGAAATACTAATGAAACGCGCAATAGCGCAACAAAATCAACATACAATAACCACGACGACAAGCGATGGACATCACACCGAGTTGTGTTTCAAAGGTATTTCTGTTCAAGTTCAAAAAGTCATCCAAGGTTTAGAGGAGGCGGATGATTCACAAGCTACGTCATCCACGCATTGTAAACTTGAACCCGTTCTTAGTATTTCGCCGAAACTAGAAGTAAGCCAAGCATCGCATGAGGACCGAGATTTAGAACCAAATCCAGCAACACCAAAAGAGAGGCCTTATTCATGTGATGAATGTGGAAAAAGTTTTCTGCTCAAACATCATTTAACGACACATGCACGGGTGCATACCGGTGAACGCCCTCACGGTTGTGTACACTGTGGCAAAACATTTGCTCACAAACACTGCTTAAATACGCATTTGTTGTTGCATTCGACCGAACGTCCATATCAGTGTAACGAGTGTAAGAAAAGTTTTACGCTGAAGCATCATTTGCTAACGCATTCGCGAGTCCATAGTAGAGAACGTCCATTTATATGCCAAGAGTGTGGCCGGGCGTTTCCGCTTAAGAGACACCTAGTAACGCATAGTAAATTTCATGCAGGCGAGCGTCCCTTCGTGTGTGAGGATTGCGGTGAAAGTTTCGCCCAGAAAGAACATTTGGTGATGCATTCACGGTTTCACGGTTCTTTAAATCCGTTTGTTTGTCCAGATTGTGGTGCAACGTTTCCACGAAAGTTTCAATTGGTAAATCACGGGAGAATTCACGGCCGTGTGCCTCATTCATGTACCGTCTGTGGCAAAGAGTTTTTACAAAAACGTACACTAGTGGCACATATGAGATTACATACTGGCGATCAGCCATATCCGTGTACAGCATGCGGTGAAGGTTTTAGATCGAAAGCGGATTTGAATCAGCATAATCGGTTGCAACACGGCGGAATCAATCCTAATTCGGCGAATACGACAATTGTGACCACGCCggacaataaaattttgattcaacagACCGTACAGGCTCATCAGCAgcaacaacagcagcaacaacagcagcagcaacaacaacagcaacaacaagcGGCTGCTGCCGCTGCCGCCGCACAACAAGCTGCACAACAGCAACAGCACCAACAACAGCAGCAAGCCGCTCAACAGGCTGCCGCTGCAGCAGctcagcagcagcaacaacaacaacagcagcagcaacaacaacagcagcaacaacagcaacaacaaaccGTCACAGTGGTTAGTAATTCAAATAATAGTATGGTTATTCAACAAGCCACATCACCAGAAACATCACCTCGACCGCAATACGCGTGTCGAGAATGTGGAAGTGCCTTTAACAGTCGTGAAGCATTAGCGTTACATCTACGTATGCACACGGGCGATAAAAGTTTAATGACAGATTTGTGCGCATTAACAGCCGCACTGCCGGGTCATTTCTTgaccaattcaaatttaaatcaagtagtgACCGCAGTTCCAGTGCAAATAATTACATCATCGGGCCAGGTTGTCAATCAAACAATACCAGTTCAATCGCCACCGCATCAAACAACAAATGTGGTAACAACGGTTGGTGGTGGCGGCGGAGGAGGTGGCGGCGGCGGACATGGACatcaaccaaaaccaaaaacacATTTCTGTCCTAGCTGCTCGAAGGGATTTGCGTCGAAACATGGTCTATTCCAGCATAGTAAACGGCATCCGAATGGTGGATGTGCGGTACGACAACACGTTTGTGATAGTTGTGGCAAAGCATTCTTCCAAAAGAATCATTTGATGTTACATCAGCGTCAACATTTCGAAACGAAACCAAATTTAAGTCAATTGCAACAGGTAAATCAAAACCAATCCCAAGAAGTAATCACGGTGCAACAATCACAGCAAATTACGCAACAGCAATTAAATCAatcgcaacaacaacaacaacagcagcagcagcaacaacaacagcagcagcagcaacagcaacaaaatcaacaTCATCAACTAAATACCCGTGAATTAGTAATAAGTAATCAACCTGTACAAGTTCAAGTATTACAAGGTAATACCGCTCAAGTAATTAAATACGAGATCAATATTCCGCAGGATTCGCATCAAGCGATCGAGTGA
Protein Sequence
MPYLQLADGNNITIQKETKGNITHANKGVVRRMVYVSDSFQQGTTQRVITTGSPATTAVTHKKHDVLSMGCDKNCNCNENTTTAITPIFIQSDQSNHSIANGIIDSKTQTVLTTSGGGKATHFMSPIGPLQLTAEEYSEILMKRAIAQQNQHTITTTTSDGHHTELCFKGISVQVQKVIQGLEEADDSQATSSTHCKLEPVLSISPKLEVSQASHEDRDLEPNPATPKERPYSCDECGKSFLLKHHLTTHARVHTGERPHGCVHCGKTFAHKHCLNTHLLLHSTERPYQCNECKKSFTLKHHLLTHSRVHSRERPFICQECGRAFPLKRHLVTHSKFHAGERPFVCEDCGESFAQKEHLVMHSRFHGSLNPFVCPDCGATFPRKFQLVNHGRIHGRVPHSCTVCGKEFLQKRTLVAHMRLHTGDQPYPCTACGEGFRSKADLNQHNRLQHGGINPNSANTTIVTTPDNKILIQQTVQAHQQQQQQQQQQQQQQQQQQAAAAAAAAQQAAQQQQHQQQQQAAQQAAAAAAQQQQQQQQQQQQQQQQQQQQQTVTVVSNSNNSMVIQQATSPETSPRPQYACRECGSAFNSREALALHLRMHTGDKSLMTDLCALTAALPGHFLTNSNLNQVVTAVPVQIITSSGQVVNQTIPVQSPPHQTTNVVTTVGGGGGGGGGGGHGHQPKPKTHFCPSCSKGFASKHGLFQHSKRHPNGGCAVRQHVCDSCGKAFFQKNHLMLHQRQHFETKPNLSQLQQVNQNQSQEVITVQQSQQITQQQLNQSQQQQQQQQQQQQQQQQQQQQNQHHQLNTRELVISNQPVQVQVLQGNTAQVIKYEINIPQDSHQAIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01455098;
90% Identity
iTF_01456697;
80% Identity
-