Tver167733.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282560.1:308615107-308618987[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00059 0.33 14.8 1.3 1 23 458 480 458 480 0.94 2 13 3.1e-05 0.017 18.8 0.4 2 23 491 512 490 512 0.95 3 13 7.9e-05 0.044 17.5 2.3 1 23 518 540 518 540 0.99 4 13 0.0053 3 11.8 1.4 1 19 546 564 546 569 0.96 5 13 0.00089 0.5 14.2 1.0 2 23 662 683 661 683 0.92 6 13 2.1e-06 0.0011 22.5 1.7 1 23 689 711 689 711 0.99 7 13 0.0026 1.4 12.8 1.8 1 23 717 740 717 740 0.94 8 13 0.00025 0.14 16.0 0.9 2 23 827 848 826 848 0.95 9 13 4.7e-06 0.0026 21.4 2.2 1 23 854 876 854 876 0.96 10 13 5.1e-06 0.0028 21.3 2.1 1 23 882 905 882 905 0.97 11 13 0.0005 0.28 15.0 0.3 2 23 929 950 928 950 0.95 12 13 0.022 12 9.9 4.9 1 23 956 978 956 978 0.96 13 13 0.00056 0.31 14.9 0.4 1 23 984 1007 984 1007 0.95
Sequence Information
- Coding Sequence
- atgaatttagaaattgatataaaaatgtGCCGAATTTGCATGAAGACTAATAATGGAATATCAATTTATTCGGATAacggaattataaaaaaattacaattttgtacACGATTAGAAATTTCAAAAACtgataatttaccaaaaataatatgtaatgaATGTGTTGGGCGGTTGGAAATCGCTTACGACTTTTGTAAACAGGCGGAGTGTTCAGATAAATATTTAAGACAGGTCATAACACATCATAAGGAAGAACTGAACCAATCGGAACTGCGGAAACAGGGTATGTACGATGAAAGGGTTTTAGAAATTTATCGTACAAGGATCAAAGTAGAGCAAGATGATCAAATCGAGCAGCTGACCGATTTTGAATCAGAAGACATTTCAATCGTAAATACCTCACCGACATTAGAAGAAGGCATTAACTGTAAGGGAACTAAACGACTGACTGATAGTGTTTCTGTGTACGCGCTTGCCGGTGAATGTAGTGCAGCTGATAAAGCAAAAATAGAAGAGATTGAAGATgccgacattgaaaaaattcaagagactaaacaaataaatttattcacaataGCAAAAGTTACTTCTATTCCTAAAACTGAATTTAACCAAACAAATGAGATGACTGGAAACGTGAGTTGTTCGCAAGAAGACATCGAATCACTATCTGAGGATAAGCAGAACAAAGTAGATCAAGGCGACCATATGAAGCAGCTGACCGAAGTTAAATCGGTAAAGATTTCAGAGACAATAGAAGAGGGCAATCAGTATAAGGGAAGCATATGTGGAGCCGATATAGTAAGAATTGAAAAATTGCAAGAAACAATATTCACAATAGAGAAAGTTACTTCTATTCGTAAGAATGAGGACGACCAAACCGGTGAGATTACTGGAAAGGGAATAGTCCCCTTACAGGGAACTAAACGACTAACTGATAGTATTCCTGTGTACGTGGTTGCCGGAGAATGCAGTGCAGCTGATAAAGTAAAAATAGAAGAGATTGAGGAGGACATTGAAAAAGTTCAAGAgactaaacaaataaatttattcacaataGCGAAAGTTACTTCTATTCCTAAAACTGAATTCAACCAAACAAATGAGATGACTGGAAACTTGAGTTGTTCGCAAGAAGACATCAAATCACTCTCTGACGATACACATATCAACGTAGAACGCGGCGACCAATTGAAGCAGCCGATCGATATTAAATCGGTAACGATTTCAGATACAATAGAAGAGGACATTCAGTATAAAGAAAGCATATGCGAAGCCGACAcagcaaaaattgaaaaatcgcaAGAGACAACATTCATAAAAGCGAAAGTTACTTCTATTCGTAAGAATGAGGACGACCAAACCGGCAAGTTCGAGTGCATCGAATGCGGTGCCCATTTCACACGAAAAGGATCTCTCAAACGGCATTCACAAATCCATTTGGTGCAGCGATCGTACAAGAACAAGTGGATGTGCATGGTATGCGGCGAACGTTTCACAACAAATGGATCACTCAAGCGGCATTCACTAACCCATTCGGGTGTGCGACCGTATAAGTGTAATTTATGTAGTCGAAGCTTTGCTCTAAGCTTTAACCTAGAATCCCATAAAAGGCGCCATTCGGCTAGAAAACCTTACACTTGTGAAATTTGTGGCCTCCCTTTCTGGCACCAGAGCAGTTTAAATCGTCATGATTTTAAGAAGCACAAAAACCAAAAAAAAGCtgaaatggaaataaatgtAAAGCAAAGAGAGCGAAAAAGACAAGCTACATGGAATGGAATTGCTTTAGTTGAGTCAGTTGAAGAAGGCGTTCACTATAAGGGAACAGAGCGACAAGTTTTTACTTTTGAATCTGAAGAAGAAGGAAACATGGAAGAAATTGAAGAGgaaaaaatacaagatactaAACCAATAAACGACATTACAACAACGGAAGTTCCTTCTATTCGTAAGAATGACGACGACCAAACCGATAAGATCGAATGCAAATTATGCGGTGTCCATTTCACAAAAAGAGCATCACTCAAGCGGCATTCAGTAATCCATTCGGGTGAGCGACCGTATAAGTGTAATTTATGTAGTCGAAGCTTTGCTCAGAGATATAATCTAGCAGCACATAAGAGGCGACATAGGGGAGAAAAAGGTTACACTTGCGAAACTTGTGGCTCACTTTTCCGatctaagaaaagtttaaagcAGCACGTTTTCATCAAGCACGGAAACCAAAAAAAAGCtgaaatggaaataaatgtTGTAAAGCAAAGAGAGCGAGAAAGACAGAATGGAACTGCTTTAGCAAAGACAATTGAACAAGGCGTTCACTATAAGGGAACAGAGCGACAGTTTTATACTTGTGAATCTGAAGGGAAAGAAATTGAAGAGGAAAAAATACAAGAGACTAAACCAATAAACGACATTACAACAACGGAAGTTACTTCTATTCGTAAGAATGACGACGACCAAATCGATAAGATCGAATGCAAAGTATGCGGTGTCCATTTCACAAAAAGAGCATCACTCAAGCGGCATTCAATAATCCATTCGGGTGAGCGACCGCATAAGTGTAACTCATGTGATCGAAGCTTTGCTCAGAGATATAACCTAATACGTCATATGGTGCTACATTCGCCTGAAAATCCTTACGTTTGTGAAACTTGTGGCTTCCCTTTCCGGCACCAGAGTAGTTTAAATCGGCATGTTTCTACCAAGCACGAAAACCAAAAAAAGCCTGAAACAGAAATAAATGTTGTAAAGCAAAGAGAGCGAAAAAGACAACCTATCGAATGTACCTTATGCGGTGCCCAATTCACAAAAAGAGCATCACTCAAGCGGCATTCACTAATCCATTCTGGTGAGCGGCCGCATAAGTGTAACTTATGTGATCTAAGCTTTGCTCAGAAATATACCCTATCATGCCATATGGTGCGACATTCTGGTGAAAAACCTTACACTTGTGAAACTTGTGGCTTGCCATTCCGGCTCCAGACAAGTTTAGATCGGCATATTTTTATCAAGCACGAAACCCAAAacAAAGCTGAAGTGAGAAGAATACTTTTGAAACAAAAAGAGCTATGTAGGCGTCGGCGACGCCTCCGGCGATTGCTGCTTGCTAGAGAGACACCTGAAGAAGCAGCTTTGAGAAAAGAGAAAGAAGCTGCAGGTACAAGAAGGCAGCGCTATCTAGCTAAACAGAGGCAAACGTCCAATGAATAG
- Protein Sequence
- MNLEIDIKMCRICMKTNNGISIYSDNGIIKKLQFCTRLEISKTDNLPKIICNECVGRLEIAYDFCKQAECSDKYLRQVITHHKEELNQSELRKQGMYDERVLEIYRTRIKVEQDDQIEQLTDFESEDISIVNTSPTLEEGINCKGTKRLTDSVSVYALAGECSAADKAKIEEIEDADIEKIQETKQINLFTIAKVTSIPKTEFNQTNEMTGNVSCSQEDIESLSEDKQNKVDQGDHMKQLTEVKSVKISETIEEGNQYKGSICGADIVRIEKLQETIFTIEKVTSIRKNEDDQTGEITGKGIVPLQGTKRLTDSIPVYVVAGECSAADKVKIEEIEEDIEKVQETKQINLFTIAKVTSIPKTEFNQTNEMTGNLSCSQEDIKSLSDDTHINVERGDQLKQPIDIKSVTISDTIEEDIQYKESICEADTAKIEKSQETTFIKAKVTSIRKNEDDQTGKFECIECGAHFTRKGSLKRHSQIHLVQRSYKNKWMCMVCGERFTTNGSLKRHSLTHSGVRPYKCNLCSRSFALSFNLESHKRRHSARKPYTCEICGLPFWHQSSLNRHDFKKHKNQKKAEMEINVKQRERKRQATWNGIALVESVEEGVHYKGTERQVFTFESEEEGNMEEIEEEKIQDTKPINDITTTEVPSIRKNDDDQTDKIECKLCGVHFTKRASLKRHSVIHSGERPYKCNLCSRSFAQRYNLAAHKRRHRGEKGYTCETCGSLFRSKKSLKQHVFIKHGNQKKAEMEINVVKQRERERQNGTALAKTIEQGVHYKGTERQFYTCESEGKEIEEEKIQETKPINDITTTEVTSIRKNDDDQIDKIECKVCGVHFTKRASLKRHSIIHSGERPHKCNSCDRSFAQRYNLIRHMVLHSPENPYVCETCGFPFRHQSSLNRHVSTKHENQKKPETEINVVKQRERKRQPIECTLCGAQFTKRASLKRHSLIHSGERPHKCNLCDLSFAQKYTLSCHMVRHSGEKPYTCETCGLPFRLQTSLDRHIFIKHETQNKAEVRRILLKQKELCRRRRRLRRLLLARETPEEAALRKEKEAAGTRRQRYLAKQRQTSNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -