Tver089390.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:179554771-179556536[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.35 1.9e+02 6.1 2.3 1 21 170 190 170 191 0.92 2 13 0.27 1.5e+02 6.4 2.4 2 21 200 219 200 222 0.94 3 13 0.00078 0.44 14.4 5.4 2 23 230 251 229 251 0.96 4 13 2.1e-05 0.012 19.3 2.5 1 23 257 280 257 280 0.98 5 13 0.0015 0.85 13.5 7.9 1 23 285 307 285 307 0.98 6 13 0.0053 3 11.8 6.6 1 23 313 335 313 335 0.97 7 13 5.3e-08 2.9e-05 27.5 1.2 1 23 341 363 341 363 0.96 8 13 2e-06 0.0011 22.6 0.3 1 23 369 391 369 391 0.98 9 13 4.4e-07 0.00025 24.6 3.0 1 23 397 419 397 419 0.98 10 13 0.0015 0.85 13.5 0.6 1 23 425 448 425 448 0.95 11 13 2.7e-05 0.015 19.0 0.7 1 23 476 498 476 498 0.99 12 13 1.5e-06 0.00085 22.9 0.8 1 23 504 527 504 527 0.91 13 13 3.4e-05 0.019 18.7 1.0 1 23 533 555 533 555 0.95
Sequence Information
- Coding Sequence
- atgtctcgGTTTAATTCTGACTTTAAGTATGAGCAAACATGTAGAACTTgtttaaaaaatgaagaaaatgttattagtttacAGTCAATATTTGATAATGCTATAACAGCCATTGAAATAACTGATGAACTATCCAAAATGGATCTGAAGCTAAGTAAAGATGATGGATTGCCTCAATCTATATGTAATGAATGTGTTGATGCCttaatgtatacatatacatttagGAAATTATGTGAAAATTCACAAATAACACTAGAACGGTTTCGTATATCCAACAAAATAGTTGATTTAGaatttgttgatgttgattTACTGAACAATGTAAAAGTTGAACCTGAAACTGATCGGAAATTGGAGATACAATTGGGAAACGTAATTCTACCGGATAATGCCGTTGAAACTACGGCCATAAAGATTGAAAGCTCGAATGATGAAAGGAATCATAATGAGTTGGTGGAGTTTGGATCACATTCAGaagaaattcgaaataaaagaAGAATATATCACAATTGCTTTAGATGTGGCCAATTTTGTAGGAATGGCGAAGAATTAATACGCCATGAGAAGAATAGTTGTGTTGCTAAATCAATTCCAAAGTGTCGTCattgtaatgaaatttttgaGACTGTCGAATTACTTGATACTCATATAAATTGTACTCATccaataaagaaacaaaatcaagtttGCCCAGTATGTGGAAAATGTTTTAAGAATTCACATAGTTGTAAAGTACACATAGAATCACACAGTGAAGCTCATTCTTACAAATGCGATATGtgcgaaagtaaatttaaaagtagAGCTAATCTAACCAGACATAAAAGGATTAAGCATATATTTGGAGATCATGAATGTCCGCATTGTtctaagaaattcaaaaataccaataagTATCAGTATCACTTAAAAACGCATGATCCGAATAAAAAGtacaaatgtaaatattgtGATAAATCGTTTTTACTTCGGCATCATTATGAAAATCATGAAAGAATTCATTCCGGGATTAGGCCGTATTTATGCAATATTTGTGGCAAATCTTTTCGACAAAAGGATTATTTAACACTTCATCTGCGTATGCACAATGGTGTTCGGCCTTTTGTATGTACGACTTGTGGTAAAAACTTCGCGCAATCCGGTGCGCTTTCGTTACATTTGAGAAAGCACGCAGGAATTTTCCCCTATCATTGTGACAGTTGCGGTAAAAAATTCTCTCAACAATCTTCTTTAAATGTACATTTGCGATCTCATACAGGGGAACGCCCTTTTAAATGTGATTTGTGTGATAAATCTTGTGCAGCGGCTGCAAGTTTGAAACTTCATAAGGCGAAGGTGCATGATGTAGTTTTCATTAAATCAGAGTATGGTGACAAATCGAAATGTATTAAAACAGAAGGTACCGAGGCTAATGTCTCCTTATATAAATGCAGTGAGTGCTTAAAAGAATTTAAGTTTCCTTCAGTTTTGGCAACACATATAAAAACACATTCAGAAGAGCGCAAATACGATTGTACGGAATGCGATAAATCTTTTAAACGTGCCGAACATTTAAAGGTACATGTTACTGGAGTTCACTTAAAGCAAAAGCCACATGCATGTGGTATTTGTGATAAAAGCTTCTCTCAATCTGGCGATCGCAATAAACATAGGCTGATACATAAAGAGGAAAAACCACACTCCGTATTGTTCTAA
- Protein Sequence
- MSRFNSDFKYEQTCRTCLKNEENVISLQSIFDNAITAIEITDELSKMDLKLSKDDGLPQSICNECVDALMYTYTFRKLCENSQITLERFRISNKIVDLEFVDVDLLNNVKVEPETDRKLEIQLGNVILPDNAVETTAIKIESSNDERNHNELVEFGSHSEEIRNKRRIYHNCFRCGQFCRNGEELIRHEKNSCVAKSIPKCRHCNEIFETVELLDTHINCTHPIKKQNQVCPVCGKCFKNSHSCKVHIESHSEAHSYKCDMCESKFKSRANLTRHKRIKHIFGDHECPHCSKKFKNTNKYQYHLKTHDPNKKYKCKYCDKSFLLRHHYENHERIHSGIRPYLCNICGKSFRQKDYLTLHLRMHNGVRPFVCTTCGKNFAQSGALSLHLRKHAGIFPYHCDSCGKKFSQQSSLNVHLRSHTGERPFKCDLCDKSCAAAASLKLHKAKVHDVVFIKSEYGDKSKCIKTEGTEANVSLYKCSECLKEFKFPSVLATHIKTHSEERKYDCTECDKSFKRAEHLKVHVTGVHLKQKPHACGICDKSFSQSGDRNKHRLIHKEEKPHSVLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01456707;
- 90% Identity
- -
- 80% Identity
- -