Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282559.1:15904888-15907008[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.01 5.6 10.9 1.0 1 23 265 287 265 287 0.96

2 13 0.004 2.2 12.2 1.4 2 23 296 317 295 317 0.97

3 13 0.00012 0.069 16.9 1.3 1 23 326 349 326 349 0.98

4 13 5.5e-05 0.03 18.0 0.9 1 23 391 413 391 413 0.98

5 13 0.024 13 9.8 2.5 1 23 422 444 422 444 0.96

6 13 5.8e-06 0.0032 21.1 1.2 1 23 450 472 450 472 0.98

7 13 0.00049 0.27 15.0 3.7 1 23 478 500 478 500 0.97

8 13 0.00017 0.095 16.5 2.0 3 23 513 533 511 533 0.97

9 13 9.3e-05 0.051 17.3 2.2 1 23 539 561 539 561 0.97

10 13 2.8e-06 0.0015 22.1 0.4 1 23 567 589 567 589 0.97

11 13 2.9e-08 1.6e-05 28.3 0.6 1 23 595 617 595 617 0.98

12 13 0.00032 0.18 15.6 1.7 1 23 623 645 623 645 0.99

13 13 7.8e-05 0.043 17.5 0.1 1 23 651 673 651 673 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.01	5.6	10.9	1.0	1	23	265	287	265	287	0.96
2	13	0.004	2.2	12.2	1.4	2	23	296	317	295	317	0.97
3	13	0.00012	0.069	16.9	1.3	1	23	326	349	326	349	0.98
4	13	5.5e-05	0.03	18.0	0.9	1	23	391	413	391	413	0.98
5	13	0.024	13	9.8	2.5	1	23	422	444	422	444	0.96
6	13	5.8e-06	0.0032	21.1	1.2	1	23	450	472	450	472	0.98
7	13	0.00049	0.27	15.0	3.7	1	23	478	500	478	500	0.97
8	13	0.00017	0.095	16.5	2.0	3	23	513	533	511	533	0.97
9	13	9.3e-05	0.051	17.3	2.2	1	23	539	561	539	561	0.97
10	13	2.8e-06	0.0015	22.1	0.4	1	23	567	589	567	589	0.97
11	13	2.9e-08	1.6e-05	28.3	0.6	1	23	595	617	595	617	0.98
12	13	0.00032	0.18	15.6	1.7	1	23	623	645	623	645	0.99
13	13	7.8e-05	0.043	17.5	0.1	1	23	651	673	651	673	0.98

Sequence Information

Coding Sequence: ATGAGTATTAAATTAGATGAGCTAGACCTAAGCATTTGTCGAATATGTTTGAAAACCAGCGGATTATTCCAATCGATTGTCGATGATTTAGAAAGTGGACTGAAGTTCTCCGACATTATTGCATTGTTAGTTCCGATTGCAATTCATGAAAACGATGGCTTACCTCAAAAAATATGCAAAAGTTGTGCAGATaacctaattttattaaaccattTACGAGATGTCTGTATTAAATCGGATACGTGGTTGCGAGAgaaactcaaaaataaattcaagcaAGAAAACATATCTCCTGCCCCACCTTTAAACGAATACGATCCCATCATCGCAGATGATCTAGAAGaatttaaatgtgaaaaatttcatgAGGTATTTGTCAAAGAAGATCATGTTGATGAACAAACAAATGATCAGGCCAACGAATCTCCGGTGTGTTTCGAAGAGCCCCATCAGAATGATGATGAGATCGGCACTGATGATGCCATCGACAGTGATGATGCCATCGACAGTGATGATGCCATCGACAGTGATGATGCCATCGACAGTGATGATGCCATCGACAGTGATGATGCCATCGACAGTGATGATGCCATCGACAGTGATGATGCCATCGACAGTGATGATGCCATCGACAGTGATGATGCCATCGACAGTGATGATGCCGTCGACAGTGACGGTGACATCCACAGTGATGATGACATTGACAATGATGGTGACATCGAAAATAATGATGGCATCAACAGTGATGATGAGCCactgattcaattcaaaaataagaGCCAGCAGCAGTGGTATACATGCCGCTTTTGCAACAAAGGTTTTCCTAATCAGCATGCTGTAGCGGGACATTCGAAAGTGCATAGGCAAGTCAAGGGTGAGCAGATTAAATGTGAGATATGTCATGTACAATTAGCGAGTCGGAGATCACTTTACCGCCATCAGAAGATCCACTTAAGGTCAGACGAGTTTAAACAATACACTTGTAAAAAGTGTAAAGGGAAAACCTTCAATAATCCTAAAGCTTACTCGGCACATATGAGGATACACAAAAATGACTACGAATCGGAGGAGGGACCGGCGCATAATGATCAGGACAATAATCAAAACAGTGATGAAGATATGACAAATGTGGATccaaaatcatccaaaaatacACAACTAAAACTTAGATTTAAGTGTAAAGATTGTTTTCGGGTATTCTCAAAACGAGCCTCTCTGGGATCGCACGCTCGCATCCATCAAGAGGGTTTCACGAGGAAAGAATTTATCTGCGACATatgcaatcaaaaatttaattgtaatatgtATCTGAAGCGGCACTGGGCAAGCCATCCCGAGAAAAGAATCCACAAATGCAATTTGTGcgataaaacatttatttcaagtGGCCAACTAGCTGACCACGTGAATAAACATAACGACGTTCGGGCACATGAATGCGAAACGTGCAATAAAAAGTTCTATTCTATCGAAACCTTAAAAACACATCGTAAGATTCATAAAGCAAATTATAATTCACCGGTTAACGATTGCCTTTGTCCGCATTGTGGCAAAGTGTTTGCCAACAACGCGATTCTACGACAACATTTGACTACTCATTCGGATTCTAAATCGTTTGCATGTGAACAATGCCCTAGCCGATTTACCTCAAGCCGATATCTCAACAAGCACAGGAAAACGCACGACGGGACAAAACCATTCGTCTGTAAGGAATGTGATCGCGCGTTTGTGAAAAGCTCGGCACTAACTAAACATAAACTTATACACACAGGTGAAAAACCATTTCCATGTACAATTTGTGACAAACGATTTAGAtcatcagaaaatttaaaaaggcataTTCTGATTCATACCGGAGAAAAACCTTACAAATGTAATTTGTGTGATGACGCCTTTAGGGGCAGATGTGAATTAACAGTACATATGCGTAACCATTTAGGCGGCAATATATATGAATGTGAAACATGCCCAGAAGGGTTTCGGTTGCAGAGAGAACTAAAGGAACATGTCCGTATACATTTTCTGGAAGAGAAAGAAAAGGAAACTGCAGACAAAACATGA
Protein Sequence: MSIKLDELDLSICRICLKTSGLFQSIVDDLESGLKFSDIIALLVPIAIHENDGLPQKICKSCADNLILLNHLRDVCIKSDTWLREKLKNKFKQENISPAPPLNEYDPIIADDLEEFKCEKFHEVFVKEDHVDEQTNDQANESPVCFEEPHQNDDEIGTDDAIDSDDAIDSDDAIDSDDAIDSDDAIDSDDAIDSDDAIDSDDAIDSDDAIDSDDAIDSDDAVDSDGDIHSDDDIDNDGDIENNDGINSDDEPLIQFKNKSQQQWYTCRFCNKGFPNQHAVAGHSKVHRQVKGEQIKCEICHVQLASRRSLYRHQKIHLRSDEFKQYTCKKCKGKTFNNPKAYSAHMRIHKNDYESEEGPAHNDQDNNQNSDEDMTNVDPKSSKNTQLKLRFKCKDCFRVFSKRASLGSHARIHQEGFTRKEFICDICNQKFNCNMYLKRHWASHPEKRIHKCNLCDKTFISSGQLADHVNKHNDVRAHECETCNKKFYSIETLKTHRKIHKANYNSPVNDCLCPHCGKVFANNAILRQHLTTHSDSKSFACEQCPSRFTSSRYLNKHRKTHDGTKPFVCKECDRAFVKSSALTKHKLIHTGEKPFPCTICDKRFRSSENLKRHILIHTGEKPYKCNLCDDAFRGRCELTVHMRNHLGGNIYECETCPEGFRLQRELKEHVRIHFLEEKEKETADKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -