Tver064001.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:15898064-15899995[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.006 3.4 11.6 0.8 1 23 216 238 216 238 0.97 2 13 0.0022 1.2 13.0 1.6 2 23 246 267 245 267 0.97 3 13 0.00026 0.14 15.9 1.2 1 23 273 296 273 296 0.97 4 13 0.00018 0.099 16.4 0.2 1 23 330 352 330 352 0.98 5 13 0.00018 0.098 16.4 1.2 1 23 361 383 361 383 0.96 6 13 8.9e-06 0.0049 20.5 1.9 1 23 389 411 389 411 0.98 7 13 6.5e-05 0.036 17.8 3.8 1 23 417 439 417 439 0.98 8 13 0.02 11 10.0 1.2 3 13 451 461 449 470 0.73 9 13 4.2e-05 0.023 18.4 1.5 1 23 476 498 476 498 0.97 10 13 1.3e-05 0.0074 20.0 0.3 1 23 504 526 504 526 0.97 11 13 2.6e-08 1.4e-05 28.5 0.6 1 23 532 554 532 554 0.98 12 13 1.7e-05 0.0096 19.6 0.7 1 23 560 582 560 582 0.99 13 13 7e-05 0.039 17.7 0.1 1 23 588 610 588 610 0.98
Sequence Information
- Coding Sequence
- ATGAGTATTAAATTAGATGAGCTAGACCTAAGCATTTGTCGAATATGTTTGAAAACCAGCGGATTATTCCAATCGATTGTCGATGATTTAGAAAGTGGACTGAAGTTTTCCGACATTATTGCATTGTTAGTCCCGATTGCAATTCATGAAAACGATGGCTTACCTCAAAAAATATGCAAAAGTTGTGCAGATaacctaattttattaaaccattTACGAGATGTCTGTATTAAATCGGATACGTGGTTGCGAGAgaaactcaaaaataaattcaagcaAGAAAACGAATCTCCTGCCCCTCCTTTAAACGAATACAATCCCATCATCGCAGATGATCTAGAAGaatttaaatgtgaaaaatttcatgAGGTATTTGTCAAAGAAGACATTGTTGATGAACAAATAAATGATCAGGCCAATGAATCTCCGATGTGTTTCGAAGAGCCCCATCAGAATGATGATCACATCGGCAGTGATGATGCCATCGACAGTGATGATGCCGTCGACAGTGATGCCATCGACAGTGACGGTGACATCCACAGTGATGATGACATTGACAATGATGGTGACATCGAAAATGATGATGGCATCGACAGTGATAATGAGCCACtgattcaattgaaaaataAGAGCAAGAAGCAGTGGTATTCCTGCCGCTTTTGCAACAAAGGTTTTCCTAATCAGCATGCTGTAGCGGGACATTCGAGAGTGCATATCGTCAAGGGTGAGCAGATTAAATGTGAGATATGTCATGTACAATTAGCGACTCGGAAATCACTTTACCGCCATCAGAAGATTCACTTAAGGTCAAACGTATACCCTTGTAAAAAGTGTAAAGGGAAAACCTTCAATAATCCTAAATCTTACTCGGCACATATGAAGATACACAAAAATAACTATAATGATCAGTACAATAATCAATACAGTGATGAAGATATGACAAATGTGGATccaaaatcatccaaaaatacACAACTAAAACTTAGATTTGAGTGTAAAGATTGTTTTCGGGTATTCTCAAAACGAGCCGCTCTGGGATTGCACGCTCGCATCCATCAAGAGGGTTTCACGAGGAAAGAATTTATCTGCGACATatgcaatcaaaaatttaagagAACTTTGTATTTGAAGCGGCACTGGGCAAGCCATCCCGAGAAAAGAATCCACAAATGTAATTTGTGCGATAAAACATTTATCTCAAGTGGCCAACTATCTGACCACGTGAATAAACATAACGACGTTCGGGCACATGAATGCGAAACgtgcaataaaaaattctattctaTCGAAACCTTAAAAAGACATCGTAGGATTCATAAAGCAAATTATAAACCGGTTAACGATTGCCTTTGTCCGCATTGTGGCAAAGTGTTTGCCAACAACGCGATTCTACAACATTTGACTACTCATTCGGATTCTAAATCGTTTGCATGTGAACAATGCCCTAGCCGATTTACCTCAAGCCTATATCTCAGGAAGCACATGAAAACGCACGACGGGACAAAACCATTCGTCTGTAAGGAATGTGATCGCGCGTTTGTGAAAAGCTGGGCACTAACTAAACATAAACTTATACACACAGGTGAAAAACCATTTCCATGTACAATTTGTGACAAACGATTTAGAtcatcagaaaatttaaaaaggcataTTCTGATTCATACCGGAGAAAAACCTTACAAATGTAATTTGTGTGATGACGCCTTTAGGTTCAAAGGTGATTTAACAGTACATATGCGTAACCATTTAGGCGGCAATTTATATGAATGTGAAACATGCCCAGAGGGGTTTCGGTTGCAGAGAGAACTAAAGGAACATGTCCGTATACATTTTCTGGAAGAGAAGGAAAAGGAAACTGCAGACAAAACATGA
- Protein Sequence
- MSIKLDELDLSICRICLKTSGLFQSIVDDLESGLKFSDIIALLVPIAIHENDGLPQKICKSCADNLILLNHLRDVCIKSDTWLREKLKNKFKQENESPAPPLNEYNPIIADDLEEFKCEKFHEVFVKEDIVDEQINDQANESPMCFEEPHQNDDHIGSDDAIDSDDAVDSDAIDSDGDIHSDDDIDNDGDIENDDGIDSDNEPLIQLKNKSKKQWYSCRFCNKGFPNQHAVAGHSRVHIVKGEQIKCEICHVQLATRKSLYRHQKIHLRSNVYPCKKCKGKTFNNPKSYSAHMKIHKNNYNDQYNNQYSDEDMTNVDPKSSKNTQLKLRFECKDCFRVFSKRAALGLHARIHQEGFTRKEFICDICNQKFKRTLYLKRHWASHPEKRIHKCNLCDKTFISSGQLSDHVNKHNDVRAHECETCNKKFYSIETLKRHRRIHKANYKPVNDCLCPHCGKVFANNAILQHLTTHSDSKSFACEQCPSRFTSSLYLRKHMKTHDGTKPFVCKECDRAFVKSWALTKHKLIHTGEKPFPCTICDKRFRSSENLKRHILIHTGEKPYKCNLCDDAFRFKGDLTVHMRNHLGGNLYECETCPEGFRLQRELKEHVRIHFLEEKEKETADKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01460509;
- 90% Identity
- -
- 80% Identity
- -