Tver065371.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:24732653-24734883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 7.9 10.4 0.5 1 23 122 145 122 145 0.96 2 12 0.047 26 8.8 4.5 3 23 280 301 278 301 0.95 3 12 1.8e-06 0.00099 22.7 5.6 1 23 307 329 307 329 0.98 4 12 6.9e-06 0.0038 20.9 1.8 1 23 335 357 335 357 0.98 5 12 2.7e-07 0.00015 25.3 2.0 1 23 363 386 363 386 0.95 6 12 2.6e-06 0.0014 22.2 0.2 3 23 400 420 399 420 0.97 7 12 0.18 1e+02 7.0 3.8 2 23 427 448 426 448 0.96 8 12 3e-06 0.0016 22.0 0.4 1 23 454 476 454 476 0.96 9 12 2.2e-06 0.0012 22.4 0.7 1 23 482 504 482 504 0.98 10 12 7.6e-06 0.0042 20.7 0.8 3 23 512 532 510 532 0.96 11 12 3e-07 0.00017 25.1 1.2 1 23 538 560 538 560 0.99 12 12 0.0015 0.85 13.5 1.5 1 23 565 588 565 588 0.97
Sequence Information
- Coding Sequence
- ATGGATACGATCACAGAAGGCACAGTCCTGAAAATGGATTTGGTTTGCCGTACATGTTTAAATGAATCGAATAATATGAAACCGATATTTACGGAAGATGGAAATGATTTAAGTAAAATGTTACAGTCGTGTTCCGGgttaaatATTCATGCAATGGATGGTTTTCCGGCCAATATATGTTTGGATTGTATAAATAAAGTGCATATGTCATATGAGTTTCGGCAACAGTGTGAAATTTCACATAATGCGTTGGTAAATTTTATGGGAACAAAAATCAATGGGGAACTTGTGTCAGAGGTCGAAAATGGGTCACAAATCGAGACTATCCAAACGGATGCAAAATTAGtgaatgattttgaaatatataagTGTAGCCTATGCCCGAATCAGTATACAATGCTCGATCAACTACAGGACCATTTTATGAGCGATCACCCAGATGGAGGAACATGCGATACGAAGCTGGAAGAAAGCAATTTGCTCATTATTAACGGAAATGCTGGCGAAGTGTCAGAAGGAGATAACAGTTCGAGCGCGACCGACATTAAAAACGATTGTGTTGACGAGGAGAAATACATGATTTTCAGTGAGCCTGATGTATCCGTTATAAATTTCAAAGAGGACCTTGATGATCCGGAAGATGACGACGACGATTACCACCAGAGTGAAGAAGAGTCCGGTAATGAAAGCGAGAACAGTTATGGAAATGGAATGCTGATCTATGACGAGGATGAAGATGATGATGGAATCAGCGACGATAAAGATGGTAAGCCAGTTACGCGTGGCAAAACGAAATCCTCCTCGGAGGATATCGGTAAACAAGACGAGCCCTCGATCTGTACACTGTGTAATATTACGTTTGAGAAAAAGTCCAGATATCACCACCATATGGAATCACAGCACAAGGAGGTCAAGCTGCATCAATGTGACCAGTGTGATAAAAAATTCTCGCGTCCAACGCACCTCCGACGCCATCAAGTCACACATTTAGACGTGAAACCCTATCCTTGCGATCAGTGCGATAAGCGATTCTCTCGACTAGACCACAGAAACATTCATATGCGGGCACATTCGTATATCAAGCCCTACAAATGTGAGGAATGTGATAAGGCCTTTACCAGACCAGCGCATTTAAGAAAGCATCGTGAGAATCGTCACGGTGAGCCAAGTGTAAAACCGACGCCCAAGACAGAAATTTGTGATATTTGTGAAAAAGGATTCACGACACCAAAATATCTCCAAATACATATGAAAGTACACCGGGCCGTTAAGGAATGGACGTGTAAATTTTGTCAAGAAAAATTTAACTCGAAGCAGGACCACAACGATCATCAAAAGGTACACGTGAATGAGCGACCTTTCTTATGTTCCGAGTGTGGATTACGATTTGTCCGTAACGATTACCTAGTGATCCATATGAGACGCCACAAAGGTGAGAAGCCctataaatgtaaattctgTGGCAAAGGTTTTCCGAGAGCTACCGATCTTACAGTGCACGAACGCTATCACACGGGAGAGAAGACGCATTTGTGTACGATTTGTGGTAAAGGTTTTCAACGTGCGTATAATCTGCTGGTCCATACCCGAGTGCATACCGGTGAGCGACCTTATAAATGTCCGCATTGCGATAAAAGTTTTGCCCAAGGCAATGATCTAAAGGCACATGTTCGGCGCCACACGGGTGAACGATTCAAGTGTGATATATGCGGTGATGGTTTCATCCAGGGCTACCATCTAACGCAACATAAACGTAATCAGCACGGGATCGATATGAAGTCTCATATCAGACGGGTTGAGAAATTTATAACGCCAATGGCTCAGCAACAACGAGTATTAGAGCAACAACAAATAGCACAAAAGAAAAGAAATCCCGTCACGAATCCCGTATCGGTACAAAATTTGCAGCCAACCGAAGATGTACAAGACACCAAgtcaaatattccaaaattaacCTTAATTCCAGAGTTTGAGCTACATCAGGAAAATGTTGCGGTACCATCACCACAGTTAAACCCCCCGCAACAAATTCTATATACTccgcaacagcaacaacaaaatccCAGCAGTATGCACTTGCTGGATGTAAACGAGACGATCGTAAAAATGGAACAGATCGatgaaatcaatcagatctcaACCATAATGAACTATCAGAATTAA
- Protein Sequence
- MDTITEGTVLKMDLVCRTCLNESNNMKPIFTEDGNDLSKMLQSCSGLNIHAMDGFPANICLDCINKVHMSYEFRQQCEISHNALVNFMGTKINGELVSEVENGSQIETIQTDAKLVNDFEIYKCSLCPNQYTMLDQLQDHFMSDHPDGGTCDTKLEESNLLIINGNAGEVSEGDNSSSATDIKNDCVDEEKYMIFSEPDVSVINFKEDLDDPEDDDDDYHQSEEESGNESENSYGNGMLIYDEDEDDDGISDDKDGKPVTRGKTKSSSEDIGKQDEPSICTLCNITFEKKSRYHHHMESQHKEVKLHQCDQCDKKFSRPTHLRRHQVTHLDVKPYPCDQCDKRFSRLDHRNIHMRAHSYIKPYKCEECDKAFTRPAHLRKHRENRHGEPSVKPTPKTEICDICEKGFTTPKYLQIHMKVHRAVKEWTCKFCQEKFNSKQDHNDHQKVHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHTRVHTGERPYKCPHCDKSFAQGNDLKAHVRRHTGERFKCDICGDGFIQGYHLTQHKRNQHGIDMKSHIRRVEKFITPMAQQQRVLEQQQIAQKKRNPVTNPVSVQNLQPTEDVQDTKSNIPKLTLIPEFELHQENVAVPSPQLNPPQQILYTPQQQQQNPSSMHLLDVNETIVKMEQIDEINQISTIMNYQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01456670;
- 90% Identity
- iTF_01456670;
- 80% Identity
- -