Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282559.1:410079696-410092436[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.2e-05 0.046 17.5 0.2 3 23 124 144 123 144 0.97

2 12 2.9e-06 0.0016 22.0 1.2 1 23 150 172 150 172 0.99

3 12 5.9e-07 0.00032 24.2 2.7 1 23 178 200 178 200 0.98

4 12 3.2e-05 0.018 18.8 1.6 1 23 210 232 210 232 0.99

5 12 1.6e-06 0.00087 22.9 2.0 1 23 238 260 238 260 0.98

6 12 3.2e-05 0.018 18.8 0.2 1 23 267 289 267 289 0.99

7 12 6e-06 0.0033 21.1 3.3 1 23 295 317 295 317 0.97

8 12 2.5e-05 0.014 19.1 2.6 1 23 324 346 324 346 0.99

9 12 4.1e-05 0.023 18.4 1.1 3 23 354 374 352 374 0.98

10 12 0.00055 0.31 14.9 0.3 1 20 380 399 380 402 0.93

11 12 4.4e-05 0.025 18.3 0.7 2 23 409 430 408 430 0.97

12 12 2.8e-06 0.0015 22.1 1.4 1 23 436 459 436 459 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.2e-05	0.046	17.5	0.2	3	23	124	144	123	144	0.97
2	12	2.9e-06	0.0016	22.0	1.2	1	23	150	172	150	172	0.99
3	12	5.9e-07	0.00032	24.2	2.7	1	23	178	200	178	200	0.98
4	12	3.2e-05	0.018	18.8	1.6	1	23	210	232	210	232	0.99
5	12	1.6e-06	0.00087	22.9	2.0	1	23	238	260	238	260	0.98
6	12	3.2e-05	0.018	18.8	0.2	1	23	267	289	267	289	0.99
7	12	6e-06	0.0033	21.1	3.3	1	23	295	317	295	317	0.97
8	12	2.5e-05	0.014	19.1	2.6	1	23	324	346	324	346	0.99
9	12	4.1e-05	0.023	18.4	1.1	3	23	354	374	352	374	0.98
10	12	0.00055	0.31	14.9	0.3	1	20	380	399	380	402	0.93
11	12	4.4e-05	0.025	18.3	0.7	2	23	409	430	408	430	0.97
12	12	2.8e-06	0.0015	22.1	1.4	1	23	436	459	436	459	0.97

Sequence Information

Coding Sequence: ATGTTTGAACAATCAATTAAAGCGGAACCGATGAGTTTCTATACTACATGTCAACCGCCCCCACCACCACCTCCAACCATATTACAACAACAAGCTGCATCTCAACACCATCAAACCACTCAACTAATAACTCAAGCGATAGCTGCTCGAACACCAAACGATCAGGCAGATGTACAAAGCAGTAGTAATACCAGTAATGCTAGTGTGCCTGAATGGCGGGCACGTCTCAACGAGGCAGAACAAGTTGatgaaCCTCAATCTGCCAATACTCCATTGACGACGATATCTGAAGTTACAAAACAAGAACTAACACTGTTGACGTCAGGCCAACCAAATACTCATACCAATTCACGTAGTAAACCGCAGGCTTGTAAAATTTGTGGGAAAATGTTATCTTCGGCCAGTAGCTATTATGTTCATATGAAGCTCCACTCGGGGACAAAGCCGTTTCAGTGTACGGTGTGTGAAGCAGCGTTTTGTCGTAAACCCTATTTAGAAGTTCACATGAGAACACATACAGGCGAACGGCCATTTCAATGTGACGTGTGTACGAAACGTTTTAGCCAGAAATCATCATTGAATACTCATAAACGGATACATACAGGTTATTGGACCATGCACAAACCATTTCAGTGTACCCAGTGTAATGCAGCATTTTGTCGGAAACCCTATCTCGATATTCATATGCGAATTCATACCGGTGAACGTCCGTTCGAGTGTGAAATATGTTTTAAACGTTTCACACAGAAATCGACGCTAAATATTCATAAGCGGATACATTCAGATCAGGACCGACCATTTCAATGTGACCAATGCCCATCGGCATTTTCACGTAGGCCCTATTTAGAAATCCATTTGAGAATTCATACTGGTGAACGACCATTTGAGTGTGATTTATGTCATAAACGGTTTACACAGAAGTCCTCGTTAAACATCCATAGAACGATACATGCCGTTGGAACTCGTCCATATCAATGTGAACATTGTCCAGCCGCATTTTGCCGGAAACCATATTTAGATATACATCAACGTACGCATACCGGGGAACGTCCATTCGGGTGTGATATATGTTTAAAACGTTTTAGCCAAAGATCAACGCTTAATATACATAAAAGAATTCATACAGGAGAACGGCCATACGCATgtgatatttgtaataaaacatttgcgGTCAAAAGCTATGTAACCGCCCACAGaTGGTCTCATGTGTCCGAAAAACCATTGAGCTGTGATCGTTGTTCAATGACTTTCACGAGTAAAGCCCAATTTGCCATTCACATTCGAACGCATTCAGCCGGTCAGAATTACGAGTGTAATGTTTGTGGTCGTACATTTATTCGGGATAGTTATTTAATTCGACATCATAATCGAGTGCATCGCGAAAATCGTACAACGGCGAATAGTATAGCGACGATAAATAGTGTGGCCCAGGGTGCGCATCATCATTTAATGGGAGCGCCAAATGGTACTCATGGCCATCACGGGCCAAATTCTAGTAGTAGTGCAGGCAGTACTACAAATAATACGGCCAGCGATGCTTATTCATCGAGTCGAAATCACAATCAGGTTTGTGATCTAAGATTTGTGTCCGGGTTACAAATGAACGCCTCTGCAGCCGTATCACAAATATCCAGTGGACTGTTAAGTACTAGTGACCGAAGCAGTCGAATAAATGGTTCGTCCACATCACAACCACCGTCAGGACAATTGCCAGGTAGCAATGGTACCGTTGTACAACAAAACGATAGAAATACTAATAACACTAATAGTAATAATCAAGTACTGAATCctatcaacaataataataataataatagtagtagtagtaataataataataatggcaataatagtaataacaatagtaataatagtaatccAGATAATCGTAACAACCATGTTAATATAGAATTAAATGATCGATTAATGCAGGAACGACTCGTTTTACAAAATCGTGCAATACAAGAGCGGGCGCTCCATGAGATGGCACTGCAGGGACGCGCTATACAGGAACGTGTACTAAACGAACGCAGTATATTACATCATCCACCATTAATAATACCAGGTCATGTGATTGCCCACGATCGTCTTGtagataaaaatttattggccAGTCCGGGACCTGTTTGA
Protein Sequence: MFEQSIKAEPMSFYTTCQPPPPPPPTILQQQAASQHHQTTQLITQAIAARTPNDQADVQSSSNTSNASVPEWRARLNEAEQVDEPQSANTPLTTISEVTKQELTLLTSGQPNTHTNSRSKPQACKICGKMLSSASSYYVHMKLHSGTKPFQCTVCEAAFCRKPYLEVHMRTHTGERPFQCDVCTKRFSQKSSLNTHKRIHTGYWTMHKPFQCTQCNAAFCRKPYLDIHMRIHTGERPFECEICFKRFTQKSTLNIHKRIHSDQDRPFQCDQCPSAFSRRPYLEIHLRIHTGERPFECDLCHKRFTQKSSLNIHRTIHAVGTRPYQCEHCPAAFCRKPYLDIHQRTHTGERPFGCDICLKRFSQRSTLNIHKRIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKAQFAIHIRTHSAGQNYECNVCGRTFIRDSYLIRHHNRVHRENRTTANSIATINSVAQGAHHHLMGAPNGTHGHHGPNSSSSAGSTTNNTASDAYSSSRNHNQVCDLRFVSGLQMNASAAVSQISSGLLSTSDRSSRINGSSTSQPPSGQLPGSNGTVVQQNDRNTNNTNSNNQVLNPINNNNNNNSSSSNNNNNGNNSNNNSNNSNPDNRNNHVNIELNDRLMQERLVLQNRAIQERALHEMALQGRAIQERVLNERSILHHPPLIIPGHVIAHDRLVDKNLLASPGPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01456663;
90% Identity: iTF_01456663;
80% Identity: -